BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948390
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45775.2 | Symbols: | Ribosomal L5P family protein | chr5:1... 1081 0.0
AT4G18730.1 | Symbols: RPL16B | ribosomal protein L16B | chr4:1... 726 0.0
AT3G58700.1 | Symbols: | Ribosomal L5P family protein | chr3:2... 616 1e-175
> AT5G45775.2 | Symbols: | Ribosomal L5P family protein | chr5:18565062-18566569
REVERSE LENGTH=841
Length=841
Score = 1081 bits (585), Expect = 0.0
Identities = 621/639 (97%), Gaps = 0/639 (0%)
Strand=Plus/Plus
Query 1 TTCCTCTCTTAGCTCGACTTTGATCTCCTTAAAATGGCGTCGGAGAAGAAGCTCTCAAAC 60
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 41 TTCGTCTCTTAGCTCGACATTGATCTCCTTAAAATGGCGTCGGAGAAGAAGCTCTCGAAC 100
Query 61 CCCATGAGGGACATTAAGGTTCAGAAACTTGTTCTCAACATTTCCGTTGGTGAGAGTGGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 CCCATGAGGGACATTAAGGTTCAGAAACTTGTTCTCAACATTTCCGTTGGTGAGAGTGGT 160
Query 121 GATCGTCTCACTCGTGCCTCAAAGGTGTTGGAACAGCTCAGTGGTCAAACCCCTGTCTTC 180
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 161 GATCGTCTCACTCGTGCCTCCAAGGTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTC 220
Query 181 TCCAAGGCGAGGTACACTGTGAGGTCTTTTGGTATTAGGCGTAATGAGAAGATTGCGTGT 240
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 221 TCTAAGGCGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGTGT 280
Query 241 TATGTGACTGTGAGAGGTGAGAAGGCAATGCAGCTTCTTGAGAGTGGTTTGAAAGTTAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 TATGTGACTGTGAGAGGTGAGAAGGCAATGCAGCTTCTTGAGAGTGGTTTGAAAGTTAAG 340
Query 301 GAGTATGAGCTTCTTAGGAGGAACTTTAGTGACACTGGTTGCTTTGGATTTGGTATCCAA 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 341 GAGTATGAGCTTCTTAGGAGGAACTTCAGTGACACTGGTTGCTTTGGATTTGGTATCCAA 400
Query 361 GAGCACATTGATCTTGGAATCAAGTATGATCCTTCCACTGGTATCTACGGAATGGACTTT 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 401 GAGCACATTGATCTTGGAATCAAGTACGATCCTTCCACTGGTATCTACGGAATGGACTTT 460
Query 421 TACGTTGTCCTTGAACGCCCAGGATACCGTGTGGCTCGTCGCCGAAGATGCAAGGCTCGT 480
|||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |||||
Sbjct 461 TACGTTGTCCTTGAACGCCCAGGATATCGTGTGGCTCGCCGCCGTAGATGCAAGACTCGT 520
Query 481 GTTGGTATTCAGCACAGAGTAACTAAGGATGATGCAATGAAATGGTTCCAGGTCAAGTAT 540
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 521 GTTGGTATTCAACACAGAGTAACCAAGGATGATGCAATGAAATGGTTCCAGGTCAAGTAT 580
Query 541 GAAGGAGTTATTCTCAACAAGTCTCAGAACATCACTGGTTAAAAAGTCTTTTGATCTTTA 600
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 581 GAAGGAGTTATCCTCAACAAGTCTCAGAACATCACTGGTTAAAAAGTGTTTTGATCTTTA 640
Query 601 AAGATTTTTGTTGATTCTAGCTTATTTTAAGTTGTTATC 639
|||||||||||||||||||||||||||||||||||||||
Sbjct 641 AAGATTTTTGTTGATTCTAGCTTATTTTAAGTTGTTATC 679
> AT4G18730.1 | Symbols: RPL16B | ribosomal protein L16B | chr4:10302163-10303382
FORWARD LENGTH=800
Length=800
Score = 726 bits (393), Expect = 0.0
Identities = 506/561 (90%), Gaps = 5/561 (1%)
Strand=Plus/Plus
Query 34 ATGGCGTCGGAGAAGAAGCTCTCAAACCCCATGAGGGACATTAAGGTTCAGAAACTTGTT 93
||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| || |||
Sbjct 76 ATGGCATCGGAGAAGAAGCTCTCGAACCCTATGAGGGATATTAAGGTCCAGAAGCTAGTT 135
Query 94 CTCAACATTTCCGTTGGTGAGAGTGGTGATCGTCTCACTCGTGCCTCAAAGGTGTTGGAA 153
|| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 136 CTTAACATCTCTGTTGGTGAGAGTGGTGATCGTCTCACTCGTGCCTCCAAGGTGTTGGAA 195
Query 154 CAGCTCAGTGGTCAAACCCCTGTCTTCTCCAAGGCGAGGTACACTGTGAGGTCTTTTGGT 213
|||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 196 CAGCTCAGTGGTCAGACTCCTGTCTTCTCTAAGGCGAGGTACACTGTGAGGTCTTTCGGT 255
Query 214 ATTAGGCGTAATGAGAAGATTGCGTGTTATGTGACTGTGAGAGGTGAGAAGGCAATGCAG 273
|| ||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 256 ATCAGGCGTAATGAAAAGATTGCGTGCTATGTCACCGTGAGAGGTGAGAAGGCAATGCAG 315
Query 274 CTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTT-AGGAGGAACTTTAGTGA 332
|||||||||||||| |||||||| ||||| || ||||| || ||||||||||| |||||
Sbjct 316 CTTCTTGAGAGTGGCTTGAAAGTGAAGGAATACGAGCTG-TTGAGGAGGAACTTCAGTGA 374
Query 333 CACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAGTATGATCC 392
|||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 375 CACTGGCTGCTTCGGATTCGGTATCCAGGAGCACATTGATCTTGGAATCAAGTATGATCC 434
Query 393 TTCCACTGGTATCTACGGAATGGACTTT-TACGTTGTCCTTGAACGCCCAGGATACCGTG 451
||| || ||||||||||| ||||| ||| |||||||| |||||||| |||||||||||||
Sbjct 435 TTCTACCGGTATCTACGGTATGGA-TTTCTACGTTGTTCTTGAACGTCCAGGATACCGTG 493
Query 452 TGGCTCGTCGCCGAAGATGCAAGGCTCGTGTTGGTATTCAGCACAGAGTAACTAAGGATG 511
|||| |||||||| ||||||||| |||| ||||||||||| || ||||| || |||||||
Sbjct 494 TGGCCCGTCGCCGTAGATGCAAGACTCGCGTTGGTATTCAACATAGAGTTACCAAGGATG 553
Query 512 ATGCAATGAAATGGTTCCAGGTCAAGTATGAAGGAGTTATTCTCAACAAGTCTCAGAACA 571
|||| ||||| |||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 554 ATGCCATGAAGTGGTTCCAAGTTAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAACA 613
Query 572 TCACTGGTTAAAAAGTCTTTT 592
||||||||| || || |||||
Sbjct 614 TCACTGGTTGAAGAG-CTTTT 633
> AT3G58700.1 | Symbols: | Ribosomal L5P family protein | chr3:21711563-21712955
FORWARD LENGTH=786
Length=786
Score = 616 bits (333), Expect = 1e-175
Identities = 482/555 (87%), Gaps = 6/555 (1%)
Strand=Plus/Plus
Query 32 AAATGGCGTCGGAGAAGAAGCTCTCAAACCCCATGAGGGACATTAAGGTTCAGAAACTTG 91
|||||||||||||||||||||| || ||||| |||||||||||||| || ||||| || |
Sbjct 97 AAATGGCGTCGGAGAAGAAGCTATCGAACCCAATGAGGGACATTAAAGTGCAGAAGCTGG 156
Query 92 TTCTCAACATTTCCGTTGGTGAGAGTGGTGATCGTCTCACTC-GTGCCTCAAAGGTGTTG 150
|||||||||| ||||||||||||||||| ||||||||||| | | ||||| |||||||||
Sbjct 157 TTCTCAACATCTCCGTTGGTGAGAGTGGAGATCGTCTCAC-CAGAGCCTCCAAGGTGTTG 215
Query 151 GAACAGCTCAGTGGTCAAACCCCTGTCTTCTCCAAGGCGAGGTACACTGTGAGGTCTTTT 210
||||| | |||||||| || ||||| ||||||||||| | |||||||| | ||||||
Sbjct 216 GAACAATTGAGTGGTCAGACTCCTGTTTTCTCCAAGGCTCGATACACTGTTCGTTCTTTT 275
Query 211 GGTATTAGGCGTAATGAGAAGATTGCGTGTTATGTGACTGTGAGAGGTGAGAAGGCAATG 270
||||| || ||||||||||||||||| || ||||||||||| || || ||||||||||||
Sbjct 276 GGTATAAGACGTAATGAGAAGATTGCTTGCTATGTGACTGTCAGGGGAGAGAAGGCAATG 335
Query 271 CAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTT-AGGAGGAACTTTAG 329
||||| ||||||||||| ||||||||||| || || || | |||| || |||||||| ||
Sbjct 336 CAGCTCCTTGAGAGTGGATTGAAAGTTAAAGAATACGAAC-TCTTGAGAAGGAACTTCAG 394
Query 330 TGACACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTT-GGAATCAAGTATG 388
||||||||||||||||| |||||||| ||||||||||||||| || || ||||||||||
Sbjct 395 CGACACTGGTTGCTTTGGTTTTGGTATTCAAGAGCACATTGAT-TTGGGTATCAAGTATG 453
Query 389 ATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAACGCCCAGGATACC 448
|||| || ||||| |||||||| |||||||| || ||||| ||||| || ||||| ||||
Sbjct 454 ATCCATCGACTGGAATCTACGGCATGGACTTCTATGTTGTTCTTGAGCGACCAGGTTACC 513
Query 449 GTGTGGCTCGTCGCCGAAGATGCAAGGCTCGTGTTGGTATTCAGCACAGAGTAACTAAGG 508
|||| || || ||| ||||||||||| |||||||||| || ||||| ||||| || || |
Sbjct 514 GTGTTGCGCGCCGCAGAAGATGCAAGACTCGTGTTGGAATCCAGCATAGAGTGACGAAAG 573
Query 509 ATGATGCAATGAAATGGTTCCAGGTCAAGTATGAAGGAGTTATTCTCAACAAGTCTCAGA 568
||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 574 ATGATGCCATGAAATGGTTCCAGGTGAAATATGAAGGAGTCATTCTCAACAAGTCTCAGA 633
Query 569 ACATCACTGGTTAAA 583
|||||||||||||||
Sbjct 634 ACATCACTGGTTAAA 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5