BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948392

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56220.1 | Symbols:  | P-loop containing nucleoside triphosp...   154    3e-37
  AT5G51720.1 | Symbols:  | 2 iron, 2 sulfur cluster binding | ch...  54.7    3e-07


> AT5G56220.1 | Symbols:  | P-loop containing nucleoside triphosphate 
hydrolases superfamily protein | chr5:22754818-22757920 
FORWARD LENGTH=3103
Length=3103

 Score =  154 bits (83),  Expect = 3e-37
 Identities = 108/119 (91%), Gaps = 5/119 (4%)
 Strand=Plus/Plus

Query  78    TATCAGGACAGTGATGCTTGGCCATAACCATGATCTCACATTGGCTGCTCAAGAAACACT  137
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  2882  TATCAGGACAGTGATGCTTGGCCATAACCATGATCTCACTTTGGCTGCTCAAGAAACACT  2941

Query  138   AGCAAAGTTGGTTAGAGTGAGAAGCAAGATATGA--AA-CTACACTCAAA--CATTTCT  191
             ||||||||| || ||| |||||||||||||||||  || | |||| ||||  |||||||
Sbjct  2942  AGCAAAGTTAGTCAGAATGAGAAGCAAGATATGATGAAACCACACACAAAAACATTTCT  3000


> AT5G51720.1 | Symbols:  | 2 iron, 2 sulfur cluster binding | 
chr5:21009592-21010345 FORWARD LENGTH=498
Length=498

 Score = 54.7 bits (29),  Expect = 3e-07
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Plus

Query  49   TTTCCATTGTGTGATGGGAGTCATGTGAA  77
            |||||||||||||||||||||||||||||
Sbjct  297  TTTCCATTGTGTGATGGGAGTCATGTGAA  325



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8450626968


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5