BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948398

Length=355
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45740.1 | Symbols:  | Ubiquitin domain-containing protein |...   470    5e-132


> AT5G45740.1 | Symbols:  | Ubiquitin domain-containing protein 
| chr5:18556975-18558097 REVERSE LENGTH=357
Length=357

 Score =  470 bits (254),  Expect = 5e-132
 Identities = 288/305 (94%), Gaps = 0/305 (0%)
 Strand=Plus/Plus

Query  31   AGAAAATCAGGAAACCTAAACCGTGGGCACATACTGAGCCAATCACAAGGGCACAACTTA  90
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  53   AGAAAATCATGAAACCTAAACCGTGGGCACATACTGAGCCAATCACAAGGGCACAACTTA  112

Query  91   CTAATATGCGTGAGGAATTTTGGGACACTTCTCCACACTATGGTGGTCAAAGAGAGATTT  150
            | || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct  113  CGAACATGCGTGAGGAATTTTGGGACACCTCTCCACACTATGGTGGTCAAAGAGAGATAT  172

Query  151  GGGAAGCACTTCGAGCTGCTGCTGAAGCTGACTTGAAACTAGCGCAAACTATTGTTGACA  210
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  173  GGGAAGCACTTCGAGCTGCTGCTGAAGCTGACTTGAAACTAGCACAAACTATTGTTGACA  232

Query  211  GTGCTGGTGTGATTGTCCAGAATCGTGATCTAACATTGTGTTGGGATGAAAGAGGTGCTA  270
            |||| || |||||||| ||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct  233  GTGCAGGCGTGATTGTTCAGAACCGTGACCTAACATTGTGCTGGGATGAAAGAGGTGCTA  292

Query  271  GATATGAGCTTCCTAGGTATGTTCTAAGTGATCCCACGAATTTGATTCGAGAGGAGGGAC  330
            ||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||
Sbjct  293  GATATGAGCTTCCTAGGTACGTTCTAAGTGAGCCCACGAATCTGATTCGAGAGGAAGGAC  352

Query  331  TGTAA  335
             ||||
Sbjct  353  AGTAA  357



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16638624919


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5