BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948401
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45700.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1371 0.0
> AT5G45700.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr5:18537349-18538196 FORWARD
LENGTH=848
Length=848
Score = 1371 bits (742), Expect = 0.0
Identities = 809/841 (96%), Gaps = 5/841 (1%)
Strand=Plus/Plus
Query 1 TCTCTGTTTCTTCTTCTTCAATGGCGACGAAACTCATACTCAAGAAAACGACAAAATCAA 60
||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 11 TCTCTCTCT-TTCTTCTTCAATGGCGACGAAACTCATACTCAAGAAAACGACAAAATCCA 69
Query 61 TCAACCGTCACCAACGTAACTACCTCCGCCGTCACCGGAAAACTCAGATCGGATGCTCAC 120
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 70 TCAGCCGTCACCAACGTAACTACCTCCGCCGTCACCGGAAATCTCAGATCGGATGCTCAC 129
Query 121 CGTCCCCGGTTACAACCACCGTCATCGCCACCATCAACAAATCGATCTACAGATGTCACC 180
|||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 130 CGTCTCCGGCCACAACCACCGTAATCGCCACCATCAACAAATCGATCTACAGATGTCATC 189
Query 181 GAAGC-TTTCTCTGTTTATTTTCTCTTCCTCG-AACCAAAGGATTCAAAATCCTCAAACC 238
||| | ||||||||||| ||||||| | | || ||| |||||||||||||||||||||||
Sbjct 190 GAA-CTTTTCTCTGTTTGTTTTCTCGT-CACGCAACAAAAGGATTCAAAATCCTCAAACC 247
Query 239 TCGCGAAGATTTTCAAAATTCTCCGTATTCATTGTTTCACGAAAGATCTGATAAATCATT 298
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 248 TCGCGAAGATTTTCAGAATTCTCCGTATTCATTGTTTCACGAAAGATCTGGTAAATCATT 307
Query 299 CGACGAGACGAAGAAGACGATCGTGTTAGATCTAGACGAAACTCTTGTTCATTCATCAAT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 CGACGAGACGAAGAAGACGATCGTGTTAGATCTAGACGAAACTCTTGTTCATTCATCAAT 367
Query 359 GGAGAAACCAGAAGTTCCTTACGATTTCGTTGTGAATCCCAAAATCGACGGTCAGATCTT 418
||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||
Sbjct 368 GGAGAAACCAGAAGTACCGTATGATTTCGTCGTGAATCCCAAAATCGACGGTCAGATCTT 427
Query 419 AACGTTTTTCGTGATCAAACGGCCAGGAGTCGACGAGTTTTTGAAGAAGATCGGAGAAAA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 AACGTTTTTCGTGATCAAACGGCCAGGAGTCGACGAGTTTTTGAAGAAGATCGGAGAAAA 487
Query 479 GTACCAGATCGTTGTTTTCACGGCGGGATTGAGAGAGTACGCGTCGTTAGTGCTCGATAA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 GTACCAGATCGTTGTTTTCACGGCGGGATTGAGAGAGTACGCGTCGTTAGTGCTCGATAA 547
Query 539 ATTGGATCCAGAGCGGCGCGTGATCTCGCGAAGCTTTTACAGAGACGCGTGTAGCGAAAT 598
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 548 ATTGGATCCAGAGCGGCGCGTGATATCGCGTAGCTTTTACAGAGACGCGTGTAGCGAAAT 607
Query 599 TGATGGGAGGTTAGTGAAGGATTTAGGGTTTGTGATGAGAGATTTGAGGCGCGTGGTGAT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 TGATGGGAGGTTAGTGAAGGATTTAGGGTTTGTGATGAGAGATTTGAGGCGCGTGGTGAT 667
Query 659 TGTTGATGATAATCCGAACTCGTACGCGCTTCAACCGGAGAACGCGTTTCCGATTAAACC 718
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 668 TGTTGATGATAATCCGAACTCGTACGCGCTTCAACCGGAGAATGCGTTTCCGATTAAACC 727
Query 719 GTTTTCGGATGATTTGGGAGATGTTGAGTTGAAGAAACTTGGTGAGtttttttATGGTGA 778
|||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 728 GTTTTCTGATGATTTGGAAGATGTTGAGTTGAAGAAACTTGGTGAGTTTTTGTATGGTGA 787
Query 779 TTGTGTCAAGTTTGAAGATATGAGAGTTGCTTTGAAGGAGTTTGTTGGAAGAGATTAATG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 788 TTGTGTCAAGTTTGAAGATATGAGAGTTGCTTTGAAGGAGTTTGTTGGAAGAGATGAATG 847
Query 839 A 839
|
Sbjct 848 A 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41945512745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5