BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948403

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G14205.1 | Symbols:  | Phosphoinositide phosphatase family p...   438    2e-122


> AT3G14205.1 | Symbols:  | Phosphoinositide phosphatase family 
protein | chr3:4715707-4720951 REVERSE LENGTH=3155
Length=3155

 Score =  438 bits (237),  Expect = 2e-122
 Identities = 308/341 (90%), Gaps = 10/341 (3%)
 Strand=Plus/Plus

Query  68    AAGTAAGCTTGGTGAACTTTGTGGGCACACAGGTTATGGTGTTGCAAAGAGCAAGATAAT  127
             ||| |||||||||||| ||||||||||||| | |||||||||||| ||||||||||| ||
Sbjct  770   AAG-AAGCTTGGTGAAATTTGTGGGCACACTGTTTATGGTGTTGCGAAGAGCAAGATCAT  828

Query  128   CACGATTCTGCATGCCTCTGTGCTATCCAATATGGCTTATTCTAAGGACGAGAAAAGATA  187
             ||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct  829   CACGATTCCACATGCCTCTGTGCTATCCAATGTGGCTTATTCTAAGGACGAGAAAAGGTA  888

Query  188   CAAGAGGCTGCTATGCACTGTTGATCTCAC-AAGGAATATATTCTTCAGCTATTCCT-TC  245
             |||||||||||| ||||||||||||||||| ||||| | | |||||||||||||||| | 
Sbjct  889   CAAGAGGCTGCTCTGCACTGTTGATCTCACAAAGGACT-TCTTCTTCAGCTATTCCTAT-  946

Query  246   CACATCATGCATACACTTCAAAGGAATATGTCTAACAATAAGGAAGGACACACTAACTAT  305
             |||||||||||||||||||| |||||| |||||||||||  ||||||||||||| |||| 
Sbjct  947   CACATCATGCATACACTTCAGAGGAATCTGTCTAACAATGTGGAAGGACACACTTACTAC  1006

Query  306   GAATCGATGTTTGTTTGGAACGAATACTTAACTCGAAGGATTCACAATAA----AA-GAC  360
             |||||||||||||| ||||||||||||||||||||||||||||  |||||    || |||
Sbjct  1007  GAATCGATGTTTGTCTGGAACGAATACTTAACTCGAAGGATTCGGAATAACGTGAAGGAC  1066

Query  361   TATATGTGGTCAGTTGCCTTGGTATATGGATTTTTCAAACA  401
             | ||||||| |||||||||||||||||||||||||||||||
Sbjct  1067  TGTATGTGGACAGTTGCCTTGGTATATGGATTTTTCAAACA  1107



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22906771032


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5