BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948429
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45490.1 | Symbols: | P-loop containing nucleoside triphosp... 1543 0.0
AT5G45440.1 | Symbols: | P-loop containing nucleoside triphosp... 889 0.0
> AT5G45490.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:18431003-18432397
FORWARD LENGTH=1395
Length=1395
Score = 1543 bits (835), Expect = 0.0
Identities = 1021/1111 (92%), Gaps = 12/1111 (1%)
Strand=Plus/Plus
Query 1 TTTCTCCGTTTTT-CTTGAATATGCCTTCAAAAACTAC-ACAACAGGCAGTCCTCACAAA 58
||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 41 TTTCTCCGTTTTTCCTTGAATATGCCTTCAAAAAAT-CTACAACAGGCAGTCCTCACAAA 99
Query 59 CGAATTCACAACCACCTTCAATAAGAATTGTGAGGACTGGCTCAAAATAAATGGTCTTGC 118
|||||||||||||| ||||| || || ||| ||||||||||| | |||||||||||||
Sbjct 100 CGAATTCACAACCAACTTCATTACGACCTGTAAGGACTGGCTCGACGTAAATGGTCTTGC 159
Query 119 CGTAGGCACCTTGGAGAAGAAGAGAGATGAGGATGAAGAAGAGGAGCGTCTGAAAACCGA 178
||| | ||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 160 TAAAGGAAACTTGGAGAAGAAGAGAGATGATAATGAAGAAGAAGAGCGTCTGAAAACCGA 219
Query 179 CTCTAAACTTCCGGACCATGACATCCACGGTTTCGATAACGAGATCAAGTCATTACAACA 238
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 220 GTCTAAACTTCCGGGCCATGACATCCACGGTTTCGATAACGAGATCAAGTCATTGCAACA 279
Query 239 CTTCTTGTTGGATCAGAAGGTTAAAAGGGAGTTCAAGAGTCTTGTGATTGTAGGAGAGTA 298
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 280 CTTCTTGTTGGATCAGAAGGTTAGGAGGGAGTTCAAGAGTCTTGTGATTGTCGGAGAATA 339
Query 299 TGGTGTTGGGAAGACAGCATTATGCCAGAAGATCTTTAATGATGAAGCTGTCAAGAGTGT 358
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 340 TGGTGTTGGGAAGACAGCATTATGCCAGAAGATCTTCAATGATGAAGCTGTGAAGAGTGT 399
Query 359 TTATGCTCCCAGGGTTTGGGTTTCTATGGCTAGCAAGGAATCTACGGAGGAACTTAATGG 418
||||||||||||||||||||| ||||||| | ||| ||||||| ||||| |||| ||||
Sbjct 400 TTATGCTCCCAGGGTTTGGGTGTCTATGGAAAACAAAGAATCTAAGGAGGGACTTGATGG 459
Query 419 GAAGATATGCGTGTTGAAGAAGATCTTGACA-GGTCTTGGAGTTAAAGA-TTCCATCCTC 476
||||||||| ||||||||||||||||||| | |||||||||||| |||| || ||||||
Sbjct 460 GAAGATATGTGTGTTGAAGAAGATCTTGA-AGGGTCTTGGAGTTGAAGAGTT-AATCCTC 517
Query 477 GAAACTATCTCTGCTGATGCCAAACAAGAATTTAAGGACAATGCGGAAGTTGCAAGCAAT 536
||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 518 GAAACTATCAGTACTGATGCCAAACAAGAATTTAAGGACAATGAGGAAGTTGCAAGCAAT 577
Query 537 CAGGAAGCTGGAGAAATTGATAGAGAGACGGAGAAAGAGAAGGAGCTCTCTGCTCTGCTC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 CAGGAAGCTGGAGAAATTGATAGAGAGACGGAGAAAGAGAAGGAGCTCTCTGCTCTGCTC 637
Query 597 TATGCACTTCACTTGAATCTGAGGTGGAAGAAGTATCTGATTGTGTTTGATGATGTCCGG 656
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 638 TATGCACTTCACTTGAATCTGAGGTGGAAGAAATATCTGATTGTGTTTGATGATGTTCGG 697
Query 657 GAAATTGATAACTGGGACGAGAAGCTCGATGTGAAACTCAACGAGGATGAGAAATGGGGA 716
|||| |||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||
Sbjct 698 GAAAACGATAACTGGGACGAAAAGCTTGATGCGAAACTCAAGGAGGATGAGAAATGGGGA 757
Query 717 AAGTTTCTTTCAGATGGATTCCCTAAAGGGTCTGGTGGGAGAGTCATATACACGACCAGA 776
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 AAGTATCTTTCAGATGGATTCCCTAAAGGGTCTGGTGGGAGAGTCATATACACGACCAGA 817
Query 777 GATGAGAATCTGGCGAAGAAGCTAGTTTCTCGGAAACATGAGATCCATCGTCTTTGGCCG 836
|||||||||||||||||||| || ||| ||| ||||||||||||||||||||||||||||
Sbjct 818 GATGAGAATCTGGCGAAGAACCTTGTTGCTCAGAAACATGAGATCCATCGTCTTTGGCCG 877
Query 837 CTGTCTGATCATCAGAGTGTCTGGAAGATATATGATGCTGTGATTCAAA-AGAGAGAGAA 895
|||||||||||||||||||||||||||||||||||||| ||| || ||| | | | ||||
Sbjct 878 CTGTCTGATCATCAGAGTGTCTGGAAGATATATGATGCAGTGGTT-AAAGATAAACAGAA 936
Query 896 AGAGTCACCAAGGAACGACAAGAAATGCATAGATGAGCTAATGAACAAGTCTCGTGGTCT 955
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 937 AGAGTCACCAAGGAACGACAAGAAATGTATAGATGAGCTGATGAATAAGTCTCGTGGTCT 996
Query 956 TCCTTTGGCTGCTAGACTGTTGGCCGAGCTTGATCCCGTGTTTGTTGACGATGAAGTTGT 1015
|||| ||||||| ||||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 997 TCCTCTGGCTGCCAGACTGTTGGCTGAGCGTGATCCCGTCTTTGTTGACGATGAAGTTGG 1056
Query 1016 CACTGGCGGTTCTATCCATGGACAA-CCTGACGCATCGAACAGCCAAACTGCAAACCAGA 1074
| ||| ||||||| |||||||||| || ||| |||||||| ||||| |||||||||||
Sbjct 1057 CCCTGTTGGTTCTACCCATGGACAAACC-GACTCATCGAACCGCCAACCTGCAAACCAGG 1115
Query 1075 CCAGCTCCTGAGAAGTGGATAAACCTGACTC 1105
|||||||||||||||||||||| | ||||||
Sbjct 1116 CCAGCTCCTGAGAAGTGGATAA-CTTGACTC 1145
> AT5G45440.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:18412308-18413555
REVERSE LENGTH=1248
Length=1248
Score = 889 bits (481), Expect = 0.0
Identities = 738/858 (86%), Gaps = 34/858 (4%)
Strand=Plus/Plus
Query 159 GAGGAGCGTCTGAAAACCGACTCTAAACTTCC-GGACCATGACATCCACGGTTTCGATAA 217
||||| ||| || |||| || ||| |||||| || ||||| ||| | |||||||| ||
Sbjct 210 GAGGATCGTGTGGAAACTGATTCTGGACTTCCAGG-TCATGATATCTATGGTTTCGAGAA 268
Query 218 CGAGATCAAGTCATTACAACACTTCTTGTTGGATCAGAAG-GTTAAAAGGGAGTTCAAGA 276
|||||||| ||||| |||||||||||||||||||| ||| ||| || | ||||||||
Sbjct 269 TGAGATCAAATCATTGCAACACTTCTTGTTGGATCAAAAGTCTTACAA-GCTGTTCAAGA 327
Query 277 GTCTTGTGATTGTAGGAGAGTATGGTGTTGGGAAGACAGCATTATGCCAGAAGATCTTTA 336
|||||||| |||| ||||| || ||||||||||||||||||||||||||| ||||||| |
Sbjct 328 GTCTTGTGGTTGTCGGAGAATACGGTGTTGGGAAGACAGCATTATGCCAGCAGATCTTCA 387
Query 337 ATGATGAAGCTGTCAAGAGTGTTTATGCTCCC-AGGGTTTGGGTTTCTATGGC-TAGCAA 394
||||| | | ||| | || || |||||| ||| ||| ||||||| ||||| || ||||||
Sbjct 388 ATGATTATGATGTGAGGAATGCTTATGC-CCCGAGGATTTGGGTATCTAT-GCATAGCAA 445
Query 395 GGAATCTACGGAGGAACTTAATGGGAAGATATGCGTGTTGAAGAAGATCTTGACA-GGTC 453
||||||| ||||| |||| ||||||||||||| |||||||||| |||||||| | ||||
Sbjct 446 TGAATCTAAGGAGGGACTTGATGGGAAGATATGTGTGTTGAAGACGATCTTGA-AGGGTC 504
Query 454 TTGGAGTTAAAGATTCCATCCTCGAAACTATCTCTGCTGATGCCAAACAAGAATTTAAGG 513
|||||||| |||| || || ||| | | || | || ||| | |||| | ||
Sbjct 505 TTGGAGTTGAAGAGTCAATGTTCG--A--A--TC--C--AT-CCATA-GAGAA-GT-AGT 550
Query 514 ACAATGCGGAAGTTGCAAGCAATCAGGAAGCTGGAGAAATTGATAGAGAGACGGAGAAAG 573
| || |||||| ||| || ||||||||||||||||||||| ||||||||| ||||
Sbjct 551 AGAA----GAAGTTTCAAACAGGCAGGAAGCTGGAGAAATTGATGGAGAGACGGCTAAAG 606
Query 574 AGAAGGAGCTCTCTGCTCTGCTCTATGCACTTCACTTGAATCTGAGGTGGAAGAAGTATC 633
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 AGAAGGAGATCTCTGCTCTGCTCTATGCACTTCACTTGAATCTGAGGTGGAAGAAGTATC 666
Query 634 TGATTGTGTTTGATGATGTCCGGGAAATTGATAACTGGGACGAGAAGCTCGATGTGAAAC 693
||||||||||||||||||||| ||| || ||||||||||||||||| ||||||| |||||
Sbjct 667 TGATTGTGTTTGATGATGTCCAGGAGATCGATAACTGGGACGAGAAACTCGATGCGAAAC 726
Query 694 TCAACGAGGATGAGAAATGGGGAAAGTTTCTTTCAGATGGATTCCCTAAAGGGTCTGGTG 753
||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 727 TCAACGAGGGTGAAAAATGGGGAAAGTATCTTTCAGATGGATTCCCTAAAGGGTCTGGTG 786
Query 754 GGAGAGTCATATACACGACCAGAGATGAGAATCTGGCGAAGAAGCTAGTT-TCTCGGAAA 812
|||| |||||||||||||||||||||||||||||||||||||| || ||| | || ||||
Sbjct 787 GGAGGGTCATATACACGACCAGAGATGAGAATCTGGCGAAGAACCTTGTTGT-TCAGAAA 845
Query 813 CATGAGATCCATCGTCTTTGGCCGCTGTCTGAT-CATCAGAGTGTCTGGAAGATATATGA 871
|||||||||||||||||||||||||| |||||| | | | ||||| ||||||||||||||
Sbjct 846 CATGAGATCCATCGTCTTTGGCCGCTATCTGATTC-TAACAGTGTTTGGAAGATATATGA 904
Query 872 TGCTGTGATTCAAAAGAGAGAGAAAGAGTCACCAAGGAACGACAAGAAATGCATAGATGA 931
|| |||| || ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 905 AGCAATGATCCAGAAGAGAGAGAAAGAGTCTCCAAGGAACGACAAGAAATGTATAGATGA 964
Query 932 GCTAATGAACAAGTCTCGTGGTCTTCCTTTGGCTGCTAGACTGTTGGCCGAGCTTGATCC 991
||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 965 GCTGATGAACAAGTCTCGTGGTCTTCCTCTGGCTGCTAGACTGTTGGCTGAGCTTGATCC 1024
Query 992 CGTGTTTGTT-GACGATG 1008
| |||| ||| |||||||
Sbjct 1025 CATGTT-GTTTGACGATG 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54166388055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5