BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948430
Length=401
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53800.1 | Symbols: | unknown protein; Has 30201 Blast hits... 614 2e-175
> AT5G53800.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21848135-21850111
FORWARD LENGTH=1277
Length=1277
Score = 614 bits (332), Expect = 2e-175
Identities = 384/408 (94%), Gaps = 8/408 (2%)
Strand=Plus/Plus
Query 1 CCACCTTGGGAAGAGAAGAAAATGTTTAAAGATTTTATGGAAGATCATAATACGGGTACA 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 715 CCACCTTGGGAAGAGAAGAAAATGTTTAAAGATTTTATGGAGGATCATAATACTGGTACA 774
Query 61 TTTACCTCGAAAAAATACTATGACATTGATGGTTACTATAGACTTAAGTTGGAAAAAGAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TTTACCTCGAAAAAATACTATGACATTGATGGTTACTATAGACTTAAGTTGGAAAAAGAG 834
Query 121 ATGAAAAAGGGTTTGAAGAAAGCTGGGATTAGTGAACGTACTGTGTTCAATGATGAGGAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 ATGAAAAAGGGTTTGAAGAAAGCTGGGATTAGTGAACGTACTGTGTTCAATGATGAGGAA 894
Query 181 CAACGCCGGCTAGAGATGCAAGAATTACGCGAAAGGCAAAAGGGAAGAAGAAGTGTTAGC 240
|||||||| || |||||||| |||||||| |||||||| |||| ||||||||||||||||
Sbjct 895 CAACGCCGACTGGAGATGCAGGAATTACGTGAAAGGCAGAAGG-AAGAAGAAGTGTTAGC 953
Query 241 TCTAAAGCGATCAATGGAA-----A--GGCACAAGCTATGAAAGAGCAGGCTCGGCTAAA 293
||||||||||||||||||| | ||| ||||||||||||||||| |||||||||||
Sbjct 954 TCTAAAGCGATCAATGGAAGGTGGAATGGCGCAAGCTATGAAAGAGCAAGCTCGGCTAAA 1013
Query 294 GGAAGAGATGGTGTACTTATACAAGATTGGAGACATGGAGGGTGCAGCTGCTATACAGAG 353
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1014 GGAAGAAATGGTGTACTTATACAAGATTGGGGACATGGAGGGTGCAGCTGCTATACAGAG 1073
Query 354 AAGGTTGGATCCAGATGTTCCCATGTAATGTGGAGGTTTTGGTTAAGC 401
|||||||||||| ||||||||||||| ||||| || |||| |||||||
Sbjct 1074 AAGGTTGGATCCGGATGTTCCCATGTGATGTGTAGCTTTTTGTTAAGC 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18950941373
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5