BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948431
Length=409
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33580.2 | Symbols: ATBCA5, BCA5 | beta carbonic anhydrase 5... 442 1e-123
> AT4G33580.2 | Symbols: ATBCA5, BCA5 | beta carbonic anhydrase
5 | chr4:16138360-16141624 FORWARD LENGTH=1361
Length=1361
Score = 442 bits (239), Expect = 1e-123
Identities = 339/382 (89%), Gaps = 27/382 (7%)
Strand=Plus/Plus
Query 1 AAGCTTCAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 AAGCTACAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 396
Query 61 ATGGGGTTGCAATTAATAGACAAAATGACAATGATGTATTTGACGACATGAAACAGCGGT 120
|||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 397 ATGGGGTTGCAATTGATAGACAAAACAACACTGATGTATTTGACGACATGAAACAGCGGT 456
Query 121 TCCTCGCCTTCAAGAAG-----G---AT-----A--ACTTAGAACACTACAAAAATTTGG 165
|||| |||||||||||| | || | |||| ||||||||||||||| |||
Sbjct 457 TCCTGGCCTTCAAGAAGCTTAAGTACATCAGGGATGACTTTGAACACTACAAAAATCTGG 516
Query 166 CAGATGTTCAAGCTCCGAAGTGTAAGCAACAGTTTCTGGTGATCGCTTGTGCAGACTCTA 225
|||||| ||||||| | ||| ||||||||||||| ||||||||||||||||
Sbjct 517 CAGATGCTCAAGCT-C----------CAA-AGTTTCTGGTGATTGCTTGTGCAGACTCTA 564
Query 226 GGGTTTGTCCTTCTACTGTCCTGGGATTCCAACCGGGTGATGCATTCACTGTTCGCAACA 285
| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 565 GAGTTTGTCCTTCTGCTGTCCTGGGATTCCAACCGGGTGACGCATTCACTGTTCGTAACA 624
Query 286 TTGCAAATTTAGTACCTTCATATGAGTCGGGACCTACTGAAACCAAAGCTGCTCTAGAGT 345
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 625 TTGCAAATTTAGTACCTCCATATGAGTCTGGACCTACTGAAACCAAAGCTGCTCTAGAGT 684
Query 346 TCTCTGTGAATACTCTTAATGT 367
||||||||||||||||||||||
Sbjct 685 TCTCTGTGAATACTCTTAATGT 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19353083365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5