BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948440

Length=2472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45475.1 | Symbols:  | Potential natural antisense gene, loc...   126    9e-28
  AT5G45480.1 | Symbols:  | Protein of unknown function (DUF594) ...   126    9e-28


> AT5G45475.1 | Symbols:  | Potential natural antisense gene, locus 
overlaps with AT5G45480 | chr5:18425837-18427016 FORWARD 
LENGTH=1054
Length=1054

 Score =  126 bits (68),  Expect = 9e-28
 Identities = 159/203 (78%), Gaps = 6/203 (3%)
 Strand=Plus/Minus

Query  2229  TAAGGAAGACGAAGAAGTGAAGTGGGAGATAGTAAGCAAAGTCTGGGTGGAGATGCTTTG  2288
             |||||| |||||   || || |||| | ||| | ||| |||| ||||| ||| |||||| 
Sbjct  556   TAAGGAGGACGACTCAGAGATGTGGAAAATAATGAGCCAAGTGTGGGTTGAGTTGCTTT-  498

Query  2289  C-TATGGAGCAACTTATTGTGACCCGAAACAACATGTAGCGCAACTGAGCAATGGAGGGG  2347
             | |||| ||| ||  | |||| | | | | |||| | ||| || || ||||| ||||| |
Sbjct  497   CGTATGCAGCGACAAAGTGTGGCGCTATAGAACACGCAGCTCAGCTAAGCAAAGGAGGAG  438

Query  2348  AATTCATCAGCTTTGTTTGGCTATTGATGGCTCATTTTGGCCTTGGAGACCAATTCCAGA  2407
             || |||| |||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct  437   AACTCATAAGCTTTGTTTGGCTATTGATGGCTCATTTTGGACTAGGAGACCAATTCCAAA  378

Query  2408  CCA-C-AGAGGAGAATGCTAGAG  2428
              || | | |||||| ||| ||||
Sbjct  377   TCAACCA-AGGAGA-TGCCAGAG  357


> AT5G45480.1 | Symbols:  | Protein of unknown function (DUF594) 
| chr5:18426104-18429090 REVERSE LENGTH=2987
Length=2987

 Score =  126 bits (68),  Expect = 9e-28
 Identities = 159/203 (78%), Gaps = 6/203 (3%)
 Strand=Plus/Plus

Query  2229  TAAGGAAGACGAAGAAGTGAAGTGGGAGATAGTAAGCAAAGTCTGGGTGGAGATGCTTTG  2288
             |||||| |||||   || || |||| | ||| | ||| |||| ||||| ||| |||||| 
Sbjct  2573  TAAGGAGGACGACTCAGAGATGTGGAAAATAATGAGCCAAGTGTGGGTTGAGTTGCTTT-  2631

Query  2289  C-TATGGAGCAACTTATTGTGACCCGAAACAACATGTAGCGCAACTGAGCAATGGAGGGG  2347
             | |||| ||| ||  | |||| | | | | |||| | ||| || || ||||| ||||| |
Sbjct  2632  CGTATGCAGCGACAAAGTGTGGCGCTATAGAACACGCAGCTCAGCTAAGCAAAGGAGGAG  2691

Query  2348  AATTCATCAGCTTTGTTTGGCTATTGATGGCTCATTTTGGCCTTGGAGACCAATTCCAGA  2407
             || |||| |||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct  2692  AACTCATAAGCTTTGTTTGGCTATTGATGGCTCATTTTGGACTAGGAGACCAATTCCAAA  2751

Query  2408  CCA-C-AGAGGAGAATGCTAGAG  2428
              || | | |||||| ||| ||||
Sbjct  2752  TCAACCA-AGGAGA-TGCCAGAG  2772



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 122658175635


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5