BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948444
Length=1078
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45428.1 | Symbols: CPuORF24 | conserved peptide upstream op... 1585 0.0
AT5G45430.1 | Symbols: | Protein kinase superfamily protein | ... 1585 0.0
> AT5G45428.1 | Symbols: CPuORF24 | conserved peptide upstream
open reading frame 24 | chr5:18407388-18411967 FORWARD LENGTH=2625
Length=2625
Score = 1585 bits (858), Expect = 0.0
Identities = 967/1019 (95%), Gaps = 9/1019 (1%)
Strand=Plus/Plus
Query 47 CTGGTACAGGGCACCTGAAGTACTGCTACAATCATATGTATACACGTCAAAAGTTGATAT 106
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 CTGGTATAGGGCACCTGAAGTACTGCTACAATCATATGTATACACGTCAAAAGTTGATAT 1414
Query 107 GTGGGCGATGGGTGCTATTATGGCGGAGCTGTTGTCTCTCCGCCCTCTCTTTCCTGGAGC 166
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1415 GTGGGCGATGGGTGCTATTATGGCGGAGCTGTTGTCTCTTCGCCCTCTCTTTCCTGGAGC 1474
Query 167 TAGTGAAGCAGATGAGATATACAAAATCTGCAGTGTCATAGGCAGCCCAACTGAAGAGAC 226
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1475 TAGTGAAGCGGATGAGATATACAAAATCTGCAGTGTCATAGGCAGCCCAACCGAAGAGAC 1534
Query 227 ATGGTTGGAGGGGTTGAACCTTGCCAGCGTTATCAATTACCAATTCCCTCAGCTTCCCGG 286
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1535 CTGGTTGGAGGGGCTGAACCTTGCCAGCGTTATCAATTACCAATTCCCTCAGTTTCCCGG 1594
Query 287 TGTACACCTATCAAGTGTGATGCCATATGCTAGTGCAGATGCGGTTAACCTTATTGAGCG 346
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1595 TGTACATTTATCAAGTGTGATGCCATATGCTAGTGCGGATGCGGTTAACCTTATTGAGCG 1654
Query 347 CCTTTGCTCGTGGGATCCCTGCAATAGACCGACTACTGCAGAGGCTCTGCAGCATCCGTT 406
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1655 CCTTTGCTCGTGGGATCCCTGCAATAGACCGACTACTGCAGAGGCTCTACAGCATCCGTT 1714
Query 407 CTTCCAGAGTTGCTACTATGTTCCCCCGTCTCTCCGACCCAAGCTGTCTGTTGGACCAAG 466
|||||| |||||||||||| ||||||| |||||||| ||||||||||||| ||||||
Sbjct 1715 CTTCCAAAGTTGCTACTATATTCCCCCATCTCTCCGTCCCAAGCTGTCTGA---ACCAAG 1771
Query 467 ACAGTCTCTCGAGCAGCAGCAATCCGTGAAGCGGTTACCAGCGGCTCTGACTTATAATGC 526
| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1772 AGGGTCTCTCGAGCAGCAGCAATCCGTGAAGCGTTTACCAGCGGCTCCGACTTATAATGC 1831
Query 527 TAATAAGCCGTTGAACTCTTACGTTACTCCAAAGACGAATGCTCCTTTTAGCAATGGTGT 586
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1832 TAATAAGCCGTTGAACACCTACGTTACTCCAAAGACGAATGCTCCTTTTAGCAATGGTGT 1891
Query 587 CAACAGTTATGTTGCTCCAAAGACGAAGGCTCCTTTTAGCAATGGTGTCAACAGTTATGT 646
||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1892 CAACAGTTATGTTACTCCAAAGACAAATGCTCCATTTAGCAATGGTGTCAACAGTTATGT 1951
Query 647 TGCTCCAAAGACGAATGCTCCTTTTGGCAATGGTGTCAACAGTTATGTTACTCCAAAGAC 706
| || |||||||||||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct 1952 TACTGCAAAGACGAATGCTCCTTTTAGCAATGGTGTCAACAATTATGTTGCTCCAAAGAT 2011
Query 707 GAATGCTCCTTTTGACAATGGTGCGACCCAGCGGAAGGTGGATATGGCTAATAATAATAA 766
|||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 2012 GAATGCTCCTTTTGACAATGGTGCGACCCAGCAGAAGGTGGATACGACTAATAATAATAA 2071
Query 767 CCAGAACACGGCGTGGAACAACAAGCCTGTGAGAAGTTATAACGTTAAAGATGCAAAGTA 826
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 2072 CCAGAACACGGCGTGGAACAACAAACCTGTGAGAAGTTATAACGTTAAAGATTCAAAGTA 2131
Query 827 TAGACCACCCGGAAGGAAGAGTCC--T--C--CATCTATGGAAAAGAACTGGGTCTTTGC 880
||||||||| |||||||||||||| | | |||||||||||||||||||||||||| |
Sbjct 2132 TAGACCACCGGGAAGGAAGAGTCCACTTGCAGCATCTATGGAAAAGAACTGGGTCTTTTC 2191
Query 881 TCGTGGAGCATCAGAGACTGCAAATAAACTGGCAAATGCAACAATCGGAGGAAGATGGAC 940
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2192 CCGTGGAGCATCAGAGACTGCAAATAAACTGGCAAATGCAACAATTGGAGGAAGATGGAC 2251
Query 941 TCAAAGTCAAAGGCAACAACAACCGGCGATGAAGGCAGGGTGGGTGGGAGAAAGTGGTGA 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2252 TCAAAGTCAAAGGCAACAACAACCGGCGATGAAGGCAGGGTGGGTGGGAGAAAGTGGTGA 2311
Query 1001 CATGTTCCTAAGACCTACACAGCCTTCAAATCCCTACTCTAGGAAAATCGCCGGTTAAG 1059
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2312 CATGTTCCTCAGACCTACACAGCCTTCCAATCCCTACTCTAGGAAAATCGCCGGTTAAG 2370
Score = 196 bits (106), Expect = 3e-49
Identities = 125/134 (93%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 597 GTTGCTCCAAAGACGAAGGCTCCTTTTAGCAATGGTGTCAACAGTTATGTTGCTCCAAAG 656
||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1854 GTTACTCCAAAGACGAATGCTCCTTTTAGCAATGGTGTCAACAGTTATGTTACTCCAAAG 1913
Query 657 ACGAATGCTCCTTTTGGCAATGGTGTCAACAGTTATGTTACTCCAAAGACGAATGCTCCT 716
|| |||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1914 ACAAATGCTCCATTTAGCAATGGTGTCAACAGTTATGTTACTGCAAAGACGAATGCTCCT 1973
Query 717 TTT-GACAATGGTG 729
||| | ||||||||
Sbjct 1974 TTTAG-CAATGGTG 1986
Score = 126 bits (68), Expect = 4e-28
Identities = 83/90 (92%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 545 TTACGTTACTCCAAAGACGAATGCTCCTTTTAGCAATGGTGTCAACAGTTATGTTGCTCC 604
||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1946 TTATGTTACTGCAAAGACGAATGCTCCTTTTAGCAATGGTGTCAACAATTATGTTGCTCC 2005
Query 605 AAAGACGAAGGCTCCTTTT-AGCAATGGTG 633
||||| ||| ||||||||| | ||||||||
Sbjct 2006 AAAGATGAATGCTCCTTTTGA-CAATGGTG 2034
Score = 124 bits (67), Expect = 1e-27
Identities = 80/86 (93%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 645 GTTGCTCCAAAGACGAATGCTCCTTTTGGCAATGGTGTCAACAGTTATGTTACTCCAAAG 704
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1854 GTTACTCCAAAGACGAATGCTCCTTTTAGCAATGGTGTCAACAGTTATGTTACTCCAAAG 1913
Query 705 ACGAATGCTCCTTTT-GACAATGGTG 729
|| |||||||| ||| | ||||||||
Sbjct 1914 ACAAATGCTCCATTTAG-CAATGGTG 1938
Score = 87.9 bits (47), Expect = 2e-16
Identities = 49/50 (98%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 1 AAATCTATTGGTCTCAAAAGATGTCATTAAGATTGCTGATCTTGGCCTGG 50
||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1256 AAATCTATTGGTCTCGAAAGATGTCATTAAGATTGCTGATCTTGGCCTGG 1305
> AT5G45430.1 | Symbols: | Protein kinase superfamily protein
| chr5:18407388-18411977 FORWARD LENGTH=2635
Length=2635
Score = 1585 bits (858), Expect = 0.0
Identities = 967/1019 (95%), Gaps = 9/1019 (1%)
Strand=Plus/Plus
Query 47 CTGGTACAGGGCACCTGAAGTACTGCTACAATCATATGTATACACGTCAAAAGTTGATAT 106
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 CTGGTATAGGGCACCTGAAGTACTGCTACAATCATATGTATACACGTCAAAAGTTGATAT 1414
Query 107 GTGGGCGATGGGTGCTATTATGGCGGAGCTGTTGTCTCTCCGCCCTCTCTTTCCTGGAGC 166
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1415 GTGGGCGATGGGTGCTATTATGGCGGAGCTGTTGTCTCTTCGCCCTCTCTTTCCTGGAGC 1474
Query 167 TAGTGAAGCAGATGAGATATACAAAATCTGCAGTGTCATAGGCAGCCCAACTGAAGAGAC 226
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1475 TAGTGAAGCGGATGAGATATACAAAATCTGCAGTGTCATAGGCAGCCCAACCGAAGAGAC 1534
Query 227 ATGGTTGGAGGGGTTGAACCTTGCCAGCGTTATCAATTACCAATTCCCTCAGCTTCCCGG 286
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1535 CTGGTTGGAGGGGCTGAACCTTGCCAGCGTTATCAATTACCAATTCCCTCAGTTTCCCGG 1594
Query 287 TGTACACCTATCAAGTGTGATGCCATATGCTAGTGCAGATGCGGTTAACCTTATTGAGCG 346
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1595 TGTACATTTATCAAGTGTGATGCCATATGCTAGTGCGGATGCGGTTAACCTTATTGAGCG 1654
Query 347 CCTTTGCTCGTGGGATCCCTGCAATAGACCGACTACTGCAGAGGCTCTGCAGCATCCGTT 406
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1655 CCTTTGCTCGTGGGATCCCTGCAATAGACCGACTACTGCAGAGGCTCTACAGCATCCGTT 1714
Query 407 CTTCCAGAGTTGCTACTATGTTCCCCCGTCTCTCCGACCCAAGCTGTCTGTTGGACCAAG 466
|||||| |||||||||||| ||||||| |||||||| ||||||||||||| ||||||
Sbjct 1715 CTTCCAAAGTTGCTACTATATTCCCCCATCTCTCCGTCCCAAGCTGTCTGA---ACCAAG 1771
Query 467 ACAGTCTCTCGAGCAGCAGCAATCCGTGAAGCGGTTACCAGCGGCTCTGACTTATAATGC 526
| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1772 AGGGTCTCTCGAGCAGCAGCAATCCGTGAAGCGTTTACCAGCGGCTCCGACTTATAATGC 1831
Query 527 TAATAAGCCGTTGAACTCTTACGTTACTCCAAAGACGAATGCTCCTTTTAGCAATGGTGT 586
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1832 TAATAAGCCGTTGAACACCTACGTTACTCCAAAGACGAATGCTCCTTTTAGCAATGGTGT 1891
Query 587 CAACAGTTATGTTGCTCCAAAGACGAAGGCTCCTTTTAGCAATGGTGTCAACAGTTATGT 646
||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1892 CAACAGTTATGTTACTCCAAAGACAAATGCTCCATTTAGCAATGGTGTCAACAGTTATGT 1951
Query 647 TGCTCCAAAGACGAATGCTCCTTTTGGCAATGGTGTCAACAGTTATGTTACTCCAAAGAC 706
| || |||||||||||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct 1952 TACTGCAAAGACGAATGCTCCTTTTAGCAATGGTGTCAACAATTATGTTGCTCCAAAGAT 2011
Query 707 GAATGCTCCTTTTGACAATGGTGCGACCCAGCGGAAGGTGGATATGGCTAATAATAATAA 766
|||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 2012 GAATGCTCCTTTTGACAATGGTGCGACCCAGCAGAAGGTGGATACGACTAATAATAATAA 2071
Query 767 CCAGAACACGGCGTGGAACAACAAGCCTGTGAGAAGTTATAACGTTAAAGATGCAAAGTA 826
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 2072 CCAGAACACGGCGTGGAACAACAAACCTGTGAGAAGTTATAACGTTAAAGATTCAAAGTA 2131
Query 827 TAGACCACCCGGAAGGAAGAGTCC--T--C--CATCTATGGAAAAGAACTGGGTCTTTGC 880
||||||||| |||||||||||||| | | |||||||||||||||||||||||||| |
Sbjct 2132 TAGACCACCGGGAAGGAAGAGTCCACTTGCAGCATCTATGGAAAAGAACTGGGTCTTTTC 2191
Query 881 TCGTGGAGCATCAGAGACTGCAAATAAACTGGCAAATGCAACAATCGGAGGAAGATGGAC 940
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2192 CCGTGGAGCATCAGAGACTGCAAATAAACTGGCAAATGCAACAATTGGAGGAAGATGGAC 2251
Query 941 TCAAAGTCAAAGGCAACAACAACCGGCGATGAAGGCAGGGTGGGTGGGAGAAAGTGGTGA 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2252 TCAAAGTCAAAGGCAACAACAACCGGCGATGAAGGCAGGGTGGGTGGGAGAAAGTGGTGA 2311
Query 1001 CATGTTCCTAAGACCTACACAGCCTTCAAATCCCTACTCTAGGAAAATCGCCGGTTAAG 1059
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2312 CATGTTCCTCAGACCTACACAGCCTTCCAATCCCTACTCTAGGAAAATCGCCGGTTAAG 2370
Score = 196 bits (106), Expect = 3e-49
Identities = 125/134 (93%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 597 GTTGCTCCAAAGACGAAGGCTCCTTTTAGCAATGGTGTCAACAGTTATGTTGCTCCAAAG 656
||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1854 GTTACTCCAAAGACGAATGCTCCTTTTAGCAATGGTGTCAACAGTTATGTTACTCCAAAG 1913
Query 657 ACGAATGCTCCTTTTGGCAATGGTGTCAACAGTTATGTTACTCCAAAGACGAATGCTCCT 716
|| |||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1914 ACAAATGCTCCATTTAGCAATGGTGTCAACAGTTATGTTACTGCAAAGACGAATGCTCCT 1973
Query 717 TTT-GACAATGGTG 729
||| | ||||||||
Sbjct 1974 TTTAG-CAATGGTG 1986
Score = 126 bits (68), Expect = 4e-28
Identities = 83/90 (92%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 545 TTACGTTACTCCAAAGACGAATGCTCCTTTTAGCAATGGTGTCAACAGTTATGTTGCTCC 604
||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1946 TTATGTTACTGCAAAGACGAATGCTCCTTTTAGCAATGGTGTCAACAATTATGTTGCTCC 2005
Query 605 AAAGACGAAGGCTCCTTTT-AGCAATGGTG 633
||||| ||| ||||||||| | ||||||||
Sbjct 2006 AAAGATGAATGCTCCTTTTGA-CAATGGTG 2034
Score = 124 bits (67), Expect = 1e-27
Identities = 80/86 (93%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 645 GTTGCTCCAAAGACGAATGCTCCTTTTGGCAATGGTGTCAACAGTTATGTTACTCCAAAG 704
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1854 GTTACTCCAAAGACGAATGCTCCTTTTAGCAATGGTGTCAACAGTTATGTTACTCCAAAG 1913
Query 705 ACGAATGCTCCTTTT-GACAATGGTG 729
|| |||||||| ||| | ||||||||
Sbjct 1914 ACAAATGCTCCATTTAG-CAATGGTG 1938
Score = 87.9 bits (47), Expect = 2e-16
Identities = 49/50 (98%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 1 AAATCTATTGGTCTCAAAAGATGTCATTAAGATTGCTGATCTTGGCCTGG 50
||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1256 AAATCTATTGGTCTCGAAAGATGTCATTAAGATTGCTGATCTTGGCCTGG 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52810973340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5