BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948445
Length=752
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55010.1 | Symbols: ATPURM, PUR5 | phosphoribosylformylglyci... 911 0.0
> AT3G55010.1 | Symbols: ATPURM, PUR5 | phosphoribosylformylglycinamidine
cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole
synthetase / AIR synthase (PUR5) | chr3:20386619-20388806
FORWARD LENGTH=1501
Length=1501
Score = 911 bits (493), Expect = 0.0
Identities = 657/735 (89%), Gaps = 16/735 (2%)
Strand=Plus/Plus
Query 1 TCAGTCTCTTTCT-CCTCCGTCATGGAAGCTCGGATTTTGCAGTCTTCTTCCTGCTGTTA 59
|||||||| |||| |||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 53 TCAGTCTCATTCTGTCTCCCCCATGGAAGCTCGGATTTTGCAGTCTTCTTCTTCCTGTTA 112
Query 60 TTCGTCTCTTGACACTGTCAATCGATACCGTTTCCCCTCTGTATCATCATCACTGAAACC 119
|||||||||| || |||||||||||| ||| ||| | ||||| ||||| || | ||||||
Sbjct 113 TTCGTCTCTTTACGCTGTCAATCGATCCCGGTTCTCTTCTGTGTCATC-TC-C-GAAACC 169
Query 120 TCTCT-CGATCAGCTTTACTCAGACGGCGAGAACAAGGGGAAGGGTATCTCGTGTTTTAT 178
| ||| || |||||||| |||||||| ||||||| || || | ||||||| ||||
Sbjct 170 TTTCTCCG-TCAGCTTTGCTCAGACGACGAGAAC------AA-GG-A-CTCGTGTATTAT 219
Query 179 CCATGTCGAAGAAAGATGATGGCACTGATGATGATGATGGCACTGATAGTCTCAATTACA 238
|||||||||||||||||| | |||||||| | ||||||| ||||||||||||||||||||
Sbjct 220 CCATGTCGAAGAAAGATGGTCGCACTGATAAAGATGATGACACTGATAGTCTCAATTACA 279
Query 239 AAGATTCAGGTGTTGATATTGATGCTGGGGCTGAGCTTGTTAAACGAATCGCCAAGATGG 298
||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 280 AAGATTCTGGTGTTGATATCGATGCTGGTGCTGAGCTTGTTAAACGAATCGCAAAGATGG 339
Query 299 CTCCTGGAATCGGCGTATTCGGTGGTCTCTTTCCACTAGGTGATAATTATCTCGTAGCTG 358
|||||||||| || | ||| ||||||||||||||| ||||||||| |||||| |||||||
Sbjct 340 CTCCTGGAATTGGTGGATTTGGTGGTCTCTTTCCATTAGGTGATAGTTATCTTGTAGCTG 399
Query 359 GTACGGATGGTGTAGGGCCTAATTTGAAATTGGCACTTGAGACTGGCATTCACGACACCA 418
||||||||||||||||| |||| |||||||||||| |||| ||||| ||||| |||||||
Sbjct 400 GTACGGATGGTGTAGGGACTAAATTGAAATTGGCATTTGAAACTGGAATTCATGACACCA 459
Query 419 TTGGAATCGACTTGGTTGCTATGAGTGTGAATGATATTATTACTTCTGGTGCAAAGCCTC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TTGGAATCGACTTGGTTGCTATGAGTGTGAATGATATTATTACTTCTGGTGCAAAGCCTC 519
Query 479 TGTTTTTCCTAGATTACTATGCAACTAGTCGTCTTGATGTAGACCTTGCAGAAAAGGTCA 538
|||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 520 TGTTTTTCCTTGATTACTTTGCTACTAGTCGTCTTGATGTAGACCTTGCTGAAAAGGTCA 579
Query 539 TTAAAGGCATTGTTGAAGGTTGTCGGCAATCGGACTGTGCTCTCTTAGGAGGAGAGACTG 598
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 580 TTAAAGGGATTGTTGAAGGTTGTCGGCAATCGGAATGTGCTCTCTTAGGGGGAGAGACTG 639
Query 599 CAGAGATGCCCGACTTTTATGCAGAGGGTGATTATGATCTCAGTGGGTTTGCAGTAGGCA 658
|||||||||| ||||||||||||||||| || || ||||| |||||||||||||||||||
Sbjct 640 CAGAGATGCCTGACTTTTATGCAGAGGGCGAGTACGATCTAAGTGGGTTTGCAGTAGGCA 699
Query 659 TAGTTAAGAAAGCTTCTGTTATAAACGGaaaaaaaCATAGTGGATGGACATGTTCTTATT 718
|||| |||||| |||| ||||| ||||||||||| ||| |||| || |||||||||||
Sbjct 700 TAGTAAAGAAAACTTCAGTTATCAACGGAAAAAA-CATTGTGGCCGGTGATGTTCTTATT 758
Query 719 GGGCTCCCTTCTAGT 733
|| ||||| ||||||
Sbjct 759 GGCCTCCCGTCTAGT 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36520224869
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5