BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948446

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60370.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   187    8e-47


> AT5G60370.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
chloroplast; CONTAINS InterPro DOMAIN/s: Defects-in-morphology 
protein 1-like, mitochondrial (InterPro:IPR019190); BEST 
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57110.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: 
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; 
Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: 
NCBI BLink). | chr5:24282838-24285033 FORWARD LENGTH=1535
Length=1535

 Score =  187 bits (101),  Expect = 8e-47
 Identities = 153/177 (86%), Gaps = 7/177 (4%)
 Strand=Plus/Plus

Query  267   CATGATCCTGAGTGGGTGATGAGCAGATACAAAGAAGTCATTGAGTT-TGGGAG-AATCG  324
             ||||||| ||| ||||||||||||| ||| | ||||||||||||||| | |||| ||| |
Sbjct  1062  CATGATCATGAATGGGTGATGAGCAAATATAGAGAAGTCATTGAGTTCT-GGAGAAAT-G  1119

Query  325   AAAGAGAAGCTGAGTACACTCCT---GAAGAACGTTGGAAATGTCGGTATTGCCAATTTG  381
             || ||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct  1120  AACGAGAAGCTGGGTACACTCCTGAAGAAGAACGTTGGAAATGTCGGTATTGCCAATTTG  1179

Query  382   CTAAGTCTTGCTGTGGAAATCCAAGTCTCGAATCTCCTTCCCCGAGCTCACCACCAA  438
             |||||||||||  |||||| || ||| |||||||||||  | | ||||||||| |||
Sbjct  1180  CTAAGTCTTGCCCTGGAAACCCGAGTTTCGAATCTCCTAGCACAAGCTCACCAACAA  1236


 Score =  117 bits (63),  Expect = 1e-25
 Identities = 73/78 (94%), Gaps = 0/78 (0%)
 Strand=Plus/Plus

Query  58   TAGGATTTGTTGGAGGTCAATGGATTGTGGGAATTATTGATGAGGTTAGAAAGGCATCTG  117
            |||||||||||||||||||||||||||||||||||||||| ||| |||||||||| | ||
Sbjct  628  TAGGATTTGTTGGAGGTCAATGGATTGTGGGAATTATTGACGAGCTTAGAAAGGCGTATG  687

Query  118  CAGATGAGTCTTCTGATA  135
            |||| |||||||||||||
Sbjct  688  CAGAAGAGTCTTCTGATA  705



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23208175914


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5