BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948460
Length=1754
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45330.1 | Symbols: DCP5-L | decapping 5-like | chr5:1836340... 2593 0.0
> AT5G45330.1 | Symbols: DCP5-L | decapping 5-like | chr5:18363406-18366672
REVERSE LENGTH=2139
Length=2139
Score = 2593 bits (1404), Expect = 0.0
Identities = 1653/1770 (93%), Gaps = 30/1770 (2%)
Strand=Plus/Plus
Query 1 CACTGATTAATCTCTAAAAAATGGCGAGTGAGAGTTCGCTATCTTCCTCTCCGTCGTCAT 60
|||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 110 CACTGATTAATCTC-AAAAAATGGCGAGTGAGAGTTCGCAATCTTCCTCGCCGTCGTCAT 168
Query 61 CTCAACCCCCGTCATCTTTACCTTCTCCGTCGCCGGGAAACAACGTCGGAGATACGTTTA 120
||||||| ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 169 CTCAACCTCCGTCATCTGTACCTTCTCCGTCGCCGGGTAACAACGTCGGCGATACGTTTA 228
Query 121 TAGGAAGTTTCATCAGTCTAATTTCTAAGTACGAGATCCGTTACGAAGGCATTCTCTACC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 TAGGAAGTTTCATCAGTCTAATTTCTAAGTACGAGATCCGTTACGAAGGCATTCTCTACC 288
Query 181 ATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACGTAAGATCATGTGGAACGGAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 289 ATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACGTAAGATCATGTGGAACGGAGG 348
Query 241 GGAGGAAGAAAGATGGGCCGCAAATTCCGCCGTGTGATAGAGTTTACGATTACATTCTTT 300
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 349 GGAGGAAGAAAGATGGGCCGCAAATTCCGCCATGTGATAAAGTTTACGATTACATTCTTT 408
Query 301 TTCGCGGAAGTGACATTAAGGATCTGCAAGTTAACCCATCTCCATCTGCTCAATCAAAAC 360
|||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 409 TTCGTGGAAGTGACATCAAGGATCTCCAAGTTAACCCATCTCCATCTGCTCAATCAAGAC 468
Query 361 AGGAGATTCAAAGTGAACAAGACATCACTCAGTCCTCTCACTCTAGGCCAGCTATGACTA 420
| ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct 469 AAGAGATTCAAAGTGAACAAGACGTCAATCAGTCCCCTCACTCTAGGCCAGCTATGACTA 528
Query 421 TGAGCTCTCCAATTTCTGGCTATGATAGCGGTTATGGTTTGGGGAGAGGATCACAATGGA 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 TGAGCTCTCCGATTTCTGGCTATGATAGCGGTTATGGTTTGGGGAGAGGATCACAATGGA 588
Query 481 TCAATACACCTGCTTTGAGTAGTAAACCGGTTCCTTTCACACAACATTCATCAGTCCCTT 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 589 TCAATACACCTGCTTTGAGTAGTAAACCGGTTCCTGTCACACAACATTCATCAGTCCCTT 648
Query 541 TAAGTTTCCAGCCTCCTTCTTCAGCTAATGCTGGAAGTTTGACAGATTCACCAGTGAGCT 600
|||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 649 TAAGCTTCCAGCCTCCTTC---AGCTAATGCTGGAAGTTTGACAGAATCACCAGTGAGCT 705
Query 601 TAATTGGTTCAACTCAAAGTAATGTTGGTTCCTCTATGCCTATGCCTTCTTTTGTGCAAG 660
|||||| ||||||||||||||||| ||||||||| ||||| || ||||||||||||||||
Sbjct 706 TAATTGATTCAACTCAAAGTAATGCTGGTTCCTCGATGCCCATTCCTTCTTTTGTGCAAG 765
Query 661 GTAACAAATTAGCTTCCACTGGTGTCCCTCTTGGTATGATGCAGCAGCCAGTTTCATCCT 720
|||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 766 GTAACAAATTTGCTTCCAGTGGTGTCCCTCTTGGTATGATGCAGAAGCCAGTTTCATCCT 825
Query 721 CCTCGACCGTACCCAATGATCCACAGATTATAGATTATTTTGCTTCACCAATCATGGGAG 780
|||||||| ||||||||| ||| |||||||| ||||||||| |||||||||||||||| |
Sbjct 826 CCTCGACCATACCCAATGGTCCGCAGATTATTGATTATTTTTCTTCACCAATCATGGG-G 884
Query 781 T-AGTGAATGATTCAACACAGGTTGTTACTCGTTCACCTGATGT-TGCTTATAATCGATC 838
| |||| |||||||| ||||||||||||||||||||||||| || | ||| |||| |||
Sbjct 885 TTAGTGGATGATTCATCACAGGTTGTTACTCGTTCACCTGACGTCT-CTTCCAATCAATC 943
Query 839 GTACTCTTCCAACCCTTCTCCCCTTGGTCAAGCACAACTCCATACTCCACCTGGCCTTGC 898
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 944 ATACTCTTCCAACCCTTCTCCTCTTGGTCAAACACAACTCCATACTCCACCTGGCCTTGC 1003
Query 899 TTCAGCACCCTCTAACCTTTCTCCACCTTCTGAACCGCAGCTTTCTGCTCCAAATATTCA 958
||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1004 TTCAGTATCCTCTAACCTTTCTCCACCTTCTGAAGCGCAGCTTTCTGCTCCAAATATTCA 1063
Query 959 GAACAGTTACCCCAGTGCGCCCCAGGCTGTTGGTAAAGTTGTCTATGACTCTCAGTCTGA 1018
||| | |||||||||||| ||||||||| |||||||||||||||||||| |||||||| |
Sbjct 1064 GAAAATTTACCCCAGTGCACCCCAGGCTATTGGTAAAGTTGTCTATGACCCTCAGTCTAA 1123
Query 1019 TCATCCAAACCGATCTATACCTTATGAGTTACCTGCTGTGGCTTCCAATTCATCTCCTGT 1078
|||||| |||||||||||||| |||||||||||||||||||||| |||||| |||||||
Sbjct 1124 TCATCCTCACCGATCTATACCTCATGAGTTACCTGCTGTGGCTTCTAATTCAGCTCCTGT 1183
Query 1079 GATTCCTGGTCCATTGTGGAAGTCGCCTGAGTCATTCTTCGGTATGAATCCGTTACCGCA 1138
||||||||||||||||| || |||||||||||||| |||| |||| |||||| || |||
Sbjct 1184 GATTCCTGGTCCATTGTCAAAATCGCCTGAGTCATTTTTCGATATGGATCCGTCACTGCA 1243
Query 1139 ATCTAGGCAGCAGATGGTATATAGGGGTCAAGAGATGTTTGCA-C--CTAACCCGGTATC 1195
|||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 1244 ATCTAGGCAGCAGATGGTATATAGGGGTCAAGAGATGTTTGCTGCAACTAACCCGGCATC 1303
Query 1196 AGCGAATGTGCCATCACAAAGTTTTGCTACCAGAAATCATGCACCGTTGCTGCCTCTTCC 1255
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1304 AGCGAATGTGCCATCACAAAGTTTTGCTCCCAGAAATCATGCACCATTGCTGCCTCTTCC 1363
Query 1256 AGTTTCTGCTCATCAGTCTCGGATCCCTAGTTCTAGCATTGAGTACACTGAAGAATTTGA 1315
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 AGTTTCAGCTCATCAGTCTCGGATCCCTAGTTCTAGCATTGAGTACACTGAAGAATTTGA 1423
Query 1316 TTTCGAGGCAATGAATGAGAAGTTCAATAAGAGTGAACTATGGGGTTATCTTGGGAA-AA 1374
||| || |||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 1424 TTTTGAAGCAATGAATGAGAAGTTCAAGAAGAGTGAACTATGGGGTTATCTTGG-AAGAA 1482
Query 1375 ATAACCAGAGAAATCAAAATGATTACGGGGAAGAAACTGCAATTGAGCCAAACGCAGAAG 1434
|||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1483 ATAACCAGAGGAATCAAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAG 1542
Query 1435 GGAACATACAGCCTGCATATAACAAGGATGACTTTTTCGACACAATCTCATGCAATCCAC 1494
|||| ||||||||||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct 1543 GGAA------GCCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAAC 1596
Query 1495 TTGACCGTGTGGCAAGAAGCGGACAACAGCACACCCAGTTTCCCGAGCACATGAGACAAG 1554
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1597 TTGACCGTGTGGCAAGAAGCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAG 1656
Query 1555 TTCCTGAGGCATTTGCTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGTG 1614
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 TTCCTGAGGCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGTG 1716
Query 1615 CATATCTCGCTGCACAAACCAATTACAGAGGCGGATACCACAATAACAACTAC------T 1668
|||||||||||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 1717 CATATCTCGCTGCACAAACCAATTACAGAGGCGGATACCATAATAACAACAACAACAACT 1776
Query 1669 A-TGC--AAACTCGGGTTATGGTTACTACTCTGGTGGGAGAGGCCGAGGCAGAAACACAC 1725
| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 ACTACTCAAACTCGGGTTATGGTTACTACTCTGGTGGGAGAGGCCGAGGCAGAAACACAC 1836
Query 1726 ATTTCTGACCTGCTGCGTTAT-TGTCTTCC 1754
||||||||||||||| ||| | | ||||||
Sbjct 1837 ATTTCTGACCTGCTGAGTT-TCTATCTTCC 1865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86746541760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5