BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948461
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45320.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1002 0.0
> AT5G45320.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: inflorescence meristem, root,
flower; EXPRESSED DURING: petal differentiation and expansion
stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis
abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G26350.1);
Has 253 Blast hits to 253 proteins in 16 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr5:18362111-18363168 REVERSE LENGTH=955
Length=955
Score = 1002 bits (542), Expect = 0.0
Identities = 603/632 (95%), Gaps = 5/632 (1%)
Strand=Plus/Plus
Query 10 ACCCCATAATAATGCCCAGATTGACTTCTCGTCACGGTACCACCAGTCCTCTCATCTGGT 69
|||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||
Sbjct 105 ACCCCATAATAATGCCCAGATTGACTTCTCGTCATGGT---ACCAGTCCTTTCATCTGGT 161
Query 70 GTGCAGCTATCATTTGTGCTATAATCTCTATTGTTGTAATCATTGGTGGCATTTTAGTCT 129
||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct 162 GTGCAGCCATCATTTGTGCCATAATCTCTATTGTTGTAATCGTTGGTGGCATTATAGTCT 221
Query 130 TCGTTGGTTACATGGTCATTCATCCTCGAGTTCCCATCATTAGTGTCACGGATGCTCACC 189
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 222 TCGTTGGTTACCTGGTCATTCATCCTCGAGTTCCCATCATTAGTGTCGCGGATGCTCACC 281
Query 190 TCGACTTCTTAAAGTATGATATAGTTGGAGTTTTGCAAACGCAGTTAACAATTGTGATTC 249
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 282 TCGACTTCTTAAAGTATGATATAGTTGGAGTTTTGCAAACGCAGTTAACGATTGTGATTC 341
Query 250 GCGTAGACAATCATAACGCTAAGGCTCATGCGTTGTTTGATGAAACCGAGTTCAAGCTAA 309
||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 342 GCGTAGAGAATGATAACGCTAAGGCTCATGCGTTGTTTGATGAAACTGAGTTCAAGCTAA 401
Query 310 GCTATGATGGGAAACTTATTGCGATTTTAAAAGCGCCTGAGTTTGAAGTTGTTAAAGAGA 369
||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 GCTATGAAGGCAAACCTATTGCGATTTTAAAAGCGCCTGAGTTTGAAGTTGTTAAAGAGA 461
Query 370 AATCAATGTTCCTTCCTTACTTGGTTCAGTCATATCCAATACCATTGAATCCAACTTTGA 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 462 AATCAATGTTCCTTCCTTACTTGGTTCAGTCATATCCAATACCATTGAATCCAACAATGA 521
Query 430 TGCAAGCTGTAGACTATGCGGTTAAACAAGATGTTATTACGTTCGAGCTCAAAGGTGGCT 489
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 522 TGCAAGCTGTAGACTATGCGGTTAAAAAAGATGTTATTACTTTCGAGCTCAAAGGTGGCT 581
Query 490 CGAA-AACTCGGTGGCGAGTCGGACCATTAGGATCGGTCAAGTTCGAGTGTAACCTTAGC 548
| || ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 582 C-AAGAACTCGGTGGCGAGTCGGACCATTAGGATCGGTTAAGTTTGAGTGTAACCTTAGC 640
Query 549 TGTGAGCTTAGGTTTAGACCTTCTGATCATAGTTACATTCCATCTCCTTGCACTTCTTCT 608
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 641 TGTCAGCTTAGGTTTAGACCTTCTGATCATAGTTACATTCCATCTCCTTGCACCTCTGCT 700
Query 609 CATAAGCATTAGAAACTCTATCTCTCATTTGT 640
||||||||||||||||||||||||||||||||
Sbjct 701 CATAAGCATTAGAAACTCTATCTCTCATTTGT 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30894000405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5