BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948474

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45275.1 | Symbols:  | Major facilitator superfamily protein...   551    2e-156


> AT5G45275.1 | Symbols:  | Major facilitator superfamily protein 
| chr5:18334405-18337380 REVERSE LENGTH=1924
Length=1924

 Score =  551 bits (298),  Expect = 2e-156
 Identities = 322/333 (97%), Gaps = 3/333 (1%)
 Strand=Plus/Plus

Query  1    AAACACGGTGAG-GGAAAAAAGATGGCGGGACAATCACGAAAATGGATGATTCTCGTAGC  59
            |||||||||| |  | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct  121  AAACACGGTG-GTCG-AAAAAGATGGCGGGACAATCACGAAAATGGATGATTCTGGTAGC  178

Query  60   GACGATCTGGATTCAAGCATTCACCGGTACGAATTTCGATTTCTCGACGTACTCGTCGAA  119
            |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  179  GACGATTTGGATTCAAGCATTCACCGGTACGAATTTCGATTTCTCGACGTATTCGTCGAA  238

Query  120  TTTGAAATCGGTTCTAGGGATTTCGCAAGTACAATTGAATTATCTCGCCGTTGCTTCGGA  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  239  TTTGAAATCGGTTCTAGGGATTTCGCAAGTACAATTGAATTATCTCGCCGTCGCTTCGGA  298

Query  180  TCTTGGGAAAGTTTTCGGTTGGTCATCGGGACTTGCACTTTTGTATTTCCCTCTTTGGAC  239
            |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  299  TCTTGGTAAAGTTTTCGGTTGGTCATCGGGACTTGCACTCTTGTATTTCCCTCTTTGGAC  358

Query  240  GGTTCTTTTCGCGGCGGCGATTATGGGTTTCGTTGGTTATGGTGTTCAATGGCTCGTCAT  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  359  GGTTCTTTTCGCGGCGGCGATTATGGGTTTCGTTGGTTATGGTGTTCAATGGCTCGTCAT  418

Query  300  CACTAACGTTATCTCTTTGCCTTATATTCTGGT  332
            ||||||||| |||||||||||||||||||||||
Sbjct  419  CACTAACGTCATCTCTTTGCCTTATATTCTGGT  451



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16889963664


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5