BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948476
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45275.1 | Symbols: | Major facilitator superfamily protein... 1816 0.0
AT4G19450.1 | Symbols: | Major facilitator superfamily protein... 758 0.0
> AT5G45275.1 | Symbols: | Major facilitator superfamily protein
| chr5:18334405-18337380 REVERSE LENGTH=1924
Length=1924
Score = 1816 bits (983), Expect = 0.0
Identities = 1084/1134 (96%), Gaps = 2/1134 (0%)
Strand=Plus/Plus
Query 1 GAGTTCGACGAGATTCTCTCATGTTTCTCTTGCTTAACATATTAGCGGTCTTGAATGGTG 60
|||||||| |||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 736 GAGTTCGAAGAGACTCTCTCATGTTTCTATTGCTTAACATATTAGCGGTCTTGAACGGTG 795
Query 61 TTTATCTGCTTCTCTTTCGTTCAAAGACTTCTGATGTAACTTCAGCTCGTCTTCTCTTTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 TTTATCTGCTTCTCTTTCGTTCAAAGACTTCTGATGTAACTTCAGCTCGTCTTCTCTTTG 855
Query 121 GTGGATCATTACTTCTCTTGATTCTTCCTCTATGCCTTCCTGGTCTAGTCTATGCTCGTA 180
|||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 856 GTGGATCAATACTTCTCTTGATTCTTCCTCTATGCCTCCCTGGTCTAGTCTACGCTCGCA 915
Query 181 ATTGGTATCTACACAATATTCACTCCAGTTTTCGTCTAGAAGGTTCTGGTTTCATTCTTG 240
|||||||||||||||| || |||||||| || ||| ||||||||||||||||||||||||
Sbjct 916 ATTGGTATCTACACAACATCCACTCCAGCTTCCGTTTAGAAGGTTCTGGTTTCATTCTTG 975
Query 241 TTGATGTTGATGAGCTTGAGATGCATAAAGGAATGGTGACACGTGAAGCCAGCCTTGAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 TTGATGTTGATGAGCTTGAGATGCATAAAGGAATGGTGACACGTGAAGCCAGCCTTGAAG 1035
Query 301 GCTACCAGTTGCTAAACGATGATGTAGTGCGAGCTGTCAATACTCCTGATCAGAAGAGTT 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 GCTACCAGTTGCTTAACGATGATGTAGTGCGAGCTGTCAATACTCCTGATCAGAAGAGTT 1095
Query 361 TCATTGAAGATGACGACGGATGTTGTTGCACTAAGCTTATTACAAGAAATCAGCTTGGGA 420
||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |
Sbjct 1096 TCATTGAAGATGACGACGGATGTTGTTGCACAAAGGTCATTACAAGAAATCAGCTTGGAA 1155
Query 421 TGCTTGG-AGAAGAACATCCTTTATCTTTACTCTTATGCAGATCAGATTTCTGGCTTTAC 479
|| |||| ||| ||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1156 TG-TTGGGAGAGGAACATCCTCTATCTTTCCTCTTATGCAGATCAGATTTCTGGCTTTAC 1214
Query 480 TATATAGCCTACTTTTGCGGCGGCACGATTGGGCTGGTTTATAGCAACAACCTGGGACAG 539
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1215 TATATAGCCTATTTTTGCGGCGGCACGATTGGACTGGTTTACAGCAACAACCTGGGACAG 1274
Query 540 ATTGCACAATCTTTAGGACAAAGCTCAGAGACAACAACTCTTGTAACGCTTTATTCGTCT 599
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1275 ATTGCACAATCTTTAGGACAAAGCTCTGAGACAACAACTCTTGTCACGCTTTATTCGTCT 1334
Query 600 TTCTCATTCTTTGGTCGATTACTTTCAGCAACACCAGACTATATCAGAGCGAAGGTTTAT 659
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 TTCTCATTCTTCGGTAGATTACTTTCAGCAACACCAGACTATATCAGAGCGAAGGTTTAT 1394
Query 660 TTTGCTAGAACAGGGTGGCTAGCCGTTGCTCTTTTACCAACCACAATTGCTCTTTTCTTG 719
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 TTTGCTAGAACTGGGTGGCTAGCCGTTGCTCTTTTACCAACCACAATTGCTCTTTTCTTG 1454
Query 720 TTGGCATCATCAGGAAGCTTGGCAGCGTTACAAGCAGGAACAGCTCTAATCGGTCTAAGC 779
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1455 TTGGCATCATCAGGAAGCTTGGCAGCGTTACAAGCAGGAACTGCTCTAATCGGTCTAAGT 1514
Query 780 TCGGGTTTCATATTTGCAGCAGCGGTTTCCATAACATCTGAGCTTTTTGGACCCAACAGT 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1515 TCGGGTTTCATATTTGCAGCAGCGGTTTCCATAACATCTGAGCTTTTTGGACCCAATAGC 1574
Query 840 GTCGGGGTTAACCACAACATCCTCATCACAAACATACCGATAGGATCATTGGTCTATGGG 899
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1575 GTTGGGGTTAACCACAACATCCTCATCACAAACATACCGATAGGATCGTTGGTCTACGGT 1634
Query 900 TTCTTAGCTGCTTTGGTCTATGAATCCCATAGCGTGGCTGGCTCAAAGACAGAGTCGGTT 959
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1635 TTCTTAGCTGCTTTGGTCTATGAATCCCATAGCGTGGCTGGGTCAAAGACCGAGTCGGTT 1694
Query 960 ATATGTATGGGACGAGACTGTTACCTCCTAACGTTTGTGTGGTGGGGATGCTTGTCGGTG 1019
|||||||||||| |||||||||| |||| ||||||| |||||||||||||||||||||||
Sbjct 1695 ATATGTATGGGAAGAGACTGTTATCTCCAAACGTTTATGTGGTGGGGATGCTTGTCGGTG 1754
Query 1020 ATTGGACTAGCTTCAAGTGTTGTCTTGTTTTTGAGAACTAGACGAGCCTATCAACGTTTT 1079
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1755 ATTGGACTAGCTTCAAGTGTTGTCTTGTTTCTGAGAACCAGACGAGCCTATCAACGTTTT 1814
Query 1080 GAACAAGATCGGATAACTTCAAGCATGCTCTATTCTTAGAATTTTCTCCAATGA 1133
|||||||||||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct 1815 GAACAAGATCGGATAACTTCCAGCATGCTCTATTCTTAGTATTTCCTCCAATGA 1868
> AT4G19450.1 | Symbols: | Major facilitator superfamily protein
| chr4:10606453-10609335 FORWARD LENGTH=1921
Length=1921
Score = 758 bits (410), Expect = 0.0
Identities = 921/1160 (79%), Gaps = 66/1160 (6%)
Strand=Plus/Plus
Query 1 GAGTTCGACGAGATTCTCTCATGTTTCTCTTGCTTAACATATTAGC-GGTCTTGAATGGT 59
||||||| || || |||||||||||||| ||||| |||||| | || | | || || |||
Sbjct 681 GAGTTCGTCGTGACTCTCTCATGTTTCTATTGCTCAACATACTCGCTGCT-TTAAACGGT 739
Query 60 GTTTATCTGCTTCTCTTTCGTTCAAAGACTTCTGATGTAACTTCAGCTCGTCTTCTCTTT 119
|||||||| ||||||||| | ||||| | |||||| |||| || |||||||| ||||||
Sbjct 740 GTTTATCTCCTTCTCTTTGGATCAAACTCCTCTGATTTAACCTCTGCTCGTCTACTCTTT 799
Query 120 GGTGGATCATTACTTCTCTT-G-ATTCTTCCTCTATGCCTTCCTGGTCTAGTCTAT-GCT 176
|||||| || | || ||||| | |||| ||| |||| |||| ||| ||||| || ||
Sbjct 800 GGTGGAGCAATCCTCCTCTTGGTATTC--CCTTTATGTATTCCCGGTTTAGTC-ATCGCC 856
Query 177 CGTAATTGGTATCTA-CACA-ATATTCACTCCAGTTTTCGTCTAGAAGGTTCTGGTTTCA 234
|| ||||||||| | | || | || ||| | ||||| ||||||||||||||||||||||
Sbjct 857 CGGAATTGGTAT-AACCGCACA-ATCCACACTAGTTTCCGTCTAGAAGGTTCTGGTTTCA 914
Query 235 TTCTTGTTGATGTTGATGAGCTTGAGATGCATAAAGGAATGGT-GACACGTGAAGCCAGC 293
||||||||||| ||||||||||||| |||||||||| ||| | | ||| |||||| | |
Sbjct 915 TTCTTGTTGATCCTGATGAGCTTGAGTTGCATAAAGGGATGCTTG-CACATGAAGCAAAC 973
Query 294 CTTGAAGGCTACCAGTTGCTAAACGATGATGTAGTGCGAG-CT-G-TCAA-TAC-TC-CT 347
| |||||| ||||| ||||| | || ||||| |||| | | | | || | | | ||
Sbjct 974 CGTGAAGGTTACCAATTGCTGAGTGACGATGTGGTGCAAAACCCGGTTAAGTCCGTAGCT 1033
Query 348 GATCAG-AAGAGTTTCATTGAAGATGACGACGGATGTTGTTGCACTAAGCTTATTACAAG 406
| | || ||||| | | ||| ||| | | |||||| || || ||||| |||||
Sbjct 1034 GTTGAGGAAGAGGAT-AGTGA---TGA-GTC--ATGTTG---CAAGAAACTTATCACAAG 1083
Query 407 AAATCAGCTTGGGATGCTTGGAGAA-GAACATCCTTTATCTTTACTCTTATGCAGATCAG 465
| ||||||||| | | |||| || |||||| |||| || | |||||| ||||||||
Sbjct 1084 AGATCAGCTTGA-AGGTTTGGGGATTGAACATTCTTTGTCGCTGCTCTTAACCAGATCAG 1142
Query 466 ATTTCTGGCTT-TACTATAT-AGCCTACTTTTGCGGCGGCACGATTGGGCTGGTTTATAG 523
|||| ||| || |||||||| | | ||||| ||||| || || ||||| || || || ||
Sbjct 1143 ATTTTTGG-TTATACTATATCA-CGTACTTCTGCGGTGGAACCATTGGACTTGTGTACAG 1200
Query 524 CAACAACCTGGGACAGATTGCACAATCTTTAGGACAAAGCTCAGAGACAACAACTCTTGT 583
||||||||| ||||||||||| ||||||||||||||||||||| | || |||||||||||
Sbjct 1201 CAACAACCTTGGACAGATTGCTCAATCTTTAGGACAAAGCTCAAATACCACAACTCTTGT 1260
Query 584 AACGCTTTATTC-GTCTTTCTCATTCTTTGGTCGATTACTTTCAGCAACACCAGACTATA 642
|| |||||||| | |||||||||||||||| |||| ||||| ||||||||||| ||||
Sbjct 1261 CACACTTTATTCTG-CTTTCTCATTCTTTGGAAGATTGCTTTCTGCAACACCAGATTATA 1319
Query 643 TCAGAGCGAAGGTTTATTTTGCTAGAACAGGGTGGCTAGCCGTTGCTCTTTTACCAACCA 702
|| ||||||||||||||||||| ||||| |||||| |||| | || || |||||||||
Sbjct 1320 TCCGAGCGAAGGTTTATTTTGCCAGAACCGGGTGGTTAGCAATCGCGCTATTACCAACCC 1379
Query 703 CAATT-GCTCTTTTCTTG-TTGGCATCATCAGGAA--GCTTGGCAGCGTTACAAGCAGGA 758
| || || ||||||||| ||| |||||||||||| || | |||| |||||||| |||
Sbjct 1380 CC-TTCGCACTTTTCTTGCTTG-CATCATCAGGAACTGCAT--CAGCATTACAAGCTGGA 1435
Query 759 ACAGCTCTAATCGGTCTAAGCTC-GGGTTTCATATTTGCAGCAGCGGTTTCCATAACATC 817
||||| || || ||| ||||||| |||||| || |||||||||||||||||||| |||||
Sbjct 1436 ACAGCGCTGATGGGTTTAAGCTCCGGGTTT-ATCTTTGCAGCAGCGGTTTCCATCACATC 1494
Query 818 TGAGCTTTTTGGACCCAACAGTGTCGGGGTTAACCACAACATCCTCATCACAAACATACC 877
|||||||||||||| |||||||| || ||||||||||| ||| | ||||||||||||||
Sbjct 1495 AGAGCTTTTTGGACCAAACAGTGTTGGAGTTAACCACAATATCTTAATCACAAACATACC 1554
Query 878 GATAGGATCATTGGTCTATGGGTTCTTAGCTGCTTTGGTCTATGAATCCCATAGCGTGGC 937
||||||||||||| ||||||| ||||| ||||| ||||||||||| || ||| | | |
Sbjct 1555 GATAGGATCATTGATCTATGGATTCTTGGCTGCATTGGTCTATGACTCACATGGTTTCAC 1614
Query 938 TGG--C----TCAAAGACA--G-AGTCGGTTATATGTATGGGACGAGACTGTTACCTCCT 988
|| | |||| ||| | ||||||| | |||||||||||||| ||||| | ||
Sbjct 1615 CGGGACCAAATCAATGACCTCGGAGTCGGTGGTGTGTATGGGACGAGATTGTTAT-TACT 1673
Query 989 A-ACGTTTGTGTGGTGGGGATGCTTGTCGGTGATTGGACTAGCTTCAAGTGTTGTCTTGT 1047
|| |||||||||||||| |||||||| | |||| |||| ||| ||| |||| ||||
Sbjct 1674 TGACCTTTGTGTGGTGGGGTTGCTTGTCTCTTCTTGGGCTAGGTTCGAGTCTTGTGTTGT 1733
Query 1048 TT-TTGAGAACTAGACGAGCCTATCAACGTTTTGAACAAGATCGGATAACTTC-AAGCAT 1105
|| || |||||||||||||| |||||||| |||||||||| ||| |||| ||| || |||
Sbjct 1734 TTATT-AGAACTAGACGAGCTTATCAACGGTTTGAACAAGCTCGTATAAGTTCGAA-CAT 1791
Query 1106 GCT-CTATTCTTAGAATTTT 1124
| | | |||||||| |||
Sbjct 1792 -CAACGACTCTTAGAAATTT 1810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55823006040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5