BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948479

Length=3237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G17050.1 | Symbols:  | disease resistance protein (TIR-NBS-L...  76.8    1e-12


> AT2G17050.1 | Symbols:  | disease resistance protein (TIR-NBS-LRR 
class), putative | chr2:7410835-7415610 REVERSE LENGTH=4068
Length=4068

 Score = 76.8 bits (41),  Expect = 1e-12
 Identities = 63/73 (86%), Gaps = 3/73 (4%)
 Strand=Plus/Plus

Query  1556  GAA-ATTCAGGATTTCTCACCAAACCTGAAAGAGCTATATCTTGCTGGGAC-TGCCATAA  1613
             ||| ||||| ||| || || ||||||||||||||||||||||||||||||| | | ||||
Sbjct  1773  GAATATTCAAGATCTCCCAACAAACCTGAAAGAGCTATATCTTGCTGGGACCT-CTATAA  1831

Query  1614  GAGAACTGCCATC  1626
             ||||| | |||||
Sbjct  1832  GAGAAGTTCCATC  1844



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 161035887030


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5