BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948486
Length=2973
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45260.1 | Symbols: RRS1, ATWRKY52, SLH1 | Disease resistanc... 1522 0.0
AT5G45050.1 | Symbols: TTR1, ATWRKY16, WRKY16 | Disease resista... 1055 0.0
AT5G17890.1 | Symbols: CHS3, DAR4 | DA1-related protein 4 | chr... 115 2e-24
> AT5G45260.1 | Symbols: RRS1, ATWRKY52, SLH1 | Disease resistance
protein (TIR-NBS-LRR class) | chr5:18326203-18332609 FORWARD
LENGTH=4321
Length=4321
Score = 1522 bits (824), Expect = 0.0
Identities = 1381/1642 (84%), Gaps = 70/1642 (4%)
Strand=Plus/Plus
Query 723 GAGGAGAATCTCCATGAGCTATCAATGAAAGTAATAAAATATTCTAATGGAAACCCGTTG 782
||| |||||||||| ||| | ||| ||| ||||||||| ||| ||||||||||||||||
Sbjct 1041 GAGCAGAATCTCCAGGAGTTGTCAGTGAGAGTAATAAATTATGCTAATGGAAACCCGTTA 1100
Query 783 GCTATCAGTATTTATGGTAA-AGAGCTGAAGGGT---AAAAGAC-CATCAGAAATGGAGA 837
||||||||| ||||||| || ||||||||| ||| |||| || | |||||||||||||
Sbjct 1101 GCTATCAGTGTTTATGG-AAGAGAGCTGAAAGGTAAGAAAAAACTC-TCAGAAATGGAGA 1158
Query 838 CTGCATTCCTCCAAA-TCAAGGGATATCCTCC-TTCTAAGATTGTTGATGCAATCAAGAG 895
|||||||||| |||| ||||| || |||||| || ||||||||| |||||| | || ||
Sbjct 1159 CTGCATTCCT-CAAACTCAAGCGACGTCCTCCATT-TAAGATTGTCGATGCATTTAAAAG 1216
Query 896 CAGCTATGGTACACTCAGTGACAGTGAAAAGAACAtttttttGGACATAGCTTGTTTCTT 955
|| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1217 CACCTATGACACACTCAGTGACAACGAAAAGAACATTTTTTTGGACATAGCTTGTTTCTT 1276
Query 956 CAAGGGAGACAATGTCGACTATGTGATGCAACTGCTTGAGGGTTGTGGtttttttCCACG 1015
| ||||||| |||||| |||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 1277 CCAGGGAGAAAATGTCAACTACGTGATACAACTGCTTGAGGGTTGTGGTTTCTTTCCACA 1336
Query 1016 TGTAGGAATCGATGTTCTCGTTGAGAAGTGTTTGGTGACTATTTCAGAAAACCGAGTT-G 1074
||| | ||| ||||| || ||||| |||||| |||| ||||||||||||||||||||| |
Sbjct 1337 TGTTGAAATTGATGTCCTTGTTGACAAGTGTCTGGTAACTATTTCAGAAAACCGAGTTTG 1396
Query 1075 AGATGCATAATCTGATCCAGGATGTTGGCCGAGGTATAATTAATGCCGAAACAGTTGAGA 1134
| ||||||| |||| ||||||| | ||||||| || || |||| |||||||| |||
Sbjct 1397 -GTTGCATAAGCTGACCCAGGATATCGGCCGAGAAATCATAAATGGAGAAACAGTACAGA 1455
Query 1135 TAAAGGGGCACAGCAGACTGTGGGAACCTTGGAGTGTCAAATATTTATCAGAAGATAATT 1194
| || ||| ||| |||||||||||||||||||| |||||||||||| |||| |||||
Sbjct 1456 TCGAGAGGCGCAGAAGACTGTGGGAACCTTGGAGCATCAAATATTTATTAGAATATAATG 1515
Query 1195 A-CTACAAAGCAAATGGAGAACCCGAAACAACTTTCAAACGTGCTCAGGGCGT-TGAAGA 1252
| | ||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||
Sbjct 1516 AAC-ACAAAGCAAATGGAGAACCTAAAACAACCTTCAAACGTGCTCAGGGC-TCTGAAGA 1573
Query 1253 GATTGAATGCATGTTTCTGGACACATCAAACTTAAGTTTTGATGT-CAAGCC-TGCTGCC 1310
||| ||| || ||||||| ||||||||||||||||| |||||| | || ||| | |||||
Sbjct 1574 GATCGAAGGCCTGTTTCTAGACACATCAAACTTAAGATTTGATCTGCA-GCCCT-CTGCC 1631
Query 1311 TTTGAGAATATGCTGAACCTTAGATTGCTCAAGATTTACTGTTCCAATACTGAAGTCCAT 1370
||| |||||||| ||||||||||||||||||| ||||| ||||||||| |||||||||||
Sbjct 1632 TTTAAGAATATGTTGAACCTTAGATTGCTCAAAATTTATTGTTCCAATCCTGAAGTCCAT 1691
Query 1371 CATGAAATCAATTTCTCCGA-AGGCGT-TCTCCATTCTCTTCCTAATGAGCTAAGACTCC 1428
| || |||||||||| || | |||| | ||| ||||||||||||||||||||||||||||
Sbjct 1692 CCTGTAATCAATTTC-CCAACAGGC-TCTCTGCATTCTCTTCCTAATGAGCTAAGACTCC 1749
Query 1429 TACACTGGGAGAACTATCCTCTGCAGTATTTGCCTCAAAAATTTGATCCTAGGAACCTTG 1488
| || |||||||||||||||||| | | ||||||||| || |||||||| ||| ||||||
Sbjct 1750 TCCATTGGGAGAACTATCCTCTGAAATCTTTGCCTCAGAATTTTGATCCAAGGCACCTTG 1809
Query 1489 TTGAAATTAACATGCCATATAGTCAACTTCGGAAACTTTGGGGTGGAACCATTAACCTTG 1548
| ||||| |||||||| ||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 1810 TCGAAATCAACATGCCGTATAGTCAACTTCAGAAACTTTGGGGTGGAACCAAGAACCTGG 1869
Query 1549 AGATGTTGAGGACGATCAAGCTTTGTCATTCACAGCAACTAGTTAATATTGACGATCTCT 1608
|||||||||||||||||| |||||| ||||| || || |||||| |||| || |||||||
Sbjct 1870 AGATGTTGAGGACGATCAGGCTTTGCCATTCCCACCATCTAGTTGATATCGATGATCTCT 1929
Query 1609 TAAAAGCTCAAAATCTTGAGGTAATTGATCTCCAAGGTTGTACAAGCCTTG-AGAGTTTC 1667
|||||||| |||||||||||||||||||||||||||||||||| || || | ||| ||||
Sbjct 1930 TAAAAGCTGAAAATCTTGAGGTAATTGATCTCCAAGGTTGTACGAGACT-GCAGAATTTC 1988
Query 1668 CCAGCAACAAGTCAATTGCTGCATCTACGAGTTGTCAATCTCTCAGGTTGC-TCAAAGAT 1726
||||| || ||| |||||| | |||||||||||| ||||||||||||||| | ||||||
Sbjct 1989 CCAGCCGCAGGTCGATTGCTACGTCTACGAGTTGTAAATCTCTCAGGTTGCAT-AAAGAT 2047
Query 1727 CAAAATTTTCCCGGAGCTTCCACCAAATATTGAGACACTGCATCTCCAAGGTACTGGCAT 1786
|||| | ||| || |||||||||||||||||| ||| ||||| || || ||||||||
Sbjct 2048 TAAAAGTGTCCTAGAAATTCCACCAAATATTGAGAAACTACATCTACAGGGAACTGGCAT 2107
Query 1787 A--AGAAA-ACTA----CCAAT-T-A-GCCCGAATGGT-GAACAGCTTG-GCAGTCTT-T 1833
| || | || | ||| | | | ||| || | || |||||| | | | || |
Sbjct 2108 ATTAGCATTACCAGTTTCCACTGTTAAGCCA-AACCATAGAG-AGCTTGTGAATT-TTCT 2164
Query 1834 --CAGAA-TTCAAAGGTCTCTCACATGCCTTGATACTCAAGCATTTAACAAGCCTGGATA 1890
||||| ||| ||||| ||| | | || ||| ||| ||||||||| ||| |
Sbjct 2165 AACAGAAATTCCG-GGTCTTTCAGA-G----GA-ACTTGAGCGTTTAACAAGTCTGC-TG 2216
Query 1891 -AATGTAGCTCATCTAGTCAAGATCTTGGCAGGCTTATTTGCTTGGAGCTGAAAGATTGC 1949
||| || ||||||| ||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 2217 GAATCTAACTCATCTTGTCAAGATCTTGGGAAGCTTATTTGCTTGGAGCTGAAAGATTGC 2276
Query 1950 TCTCGTTTGC-GAAGTCTGCCTAACATGGCTCATTTAGAATTTCTGAATGTTTTTGATCT 2008
||| |||||| || ||||||| ||||||||| ||||||| | | | |||||| |||||||
Sbjct 2277 TCTTGTTTGCAGA-GTCTGCCAAACATGGCTAATTTAGA-TCT-T-AATGTTCTTGATCT 2332
Query 2009 CTCTGGTTGCTCAAAG-CTCAAGACTATTCGGGGTTTCCCTCCGAAC-CTGAAAGAGTTA 2066
||| |||||||||| | || || |||||| ||||||||||| | |||||| |||||
Sbjct 2333 CTCGGGTTGCTCAA-GTCTTAATTCTATTCAGGGTTTCCCTC-GTTTTCTGAAACAGTTA 2390
Query 2067 TATCTTGTTGGCACTGCAGTAAGAGAAGTGCCACAACTTCCTCAAAGTCTAGAACTCTTG 2126
||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 2391 TATCTTGGTGGCACTGCAATAAGAGAAGTGCCACAACTTCCTCAAAGTCTAGAAATCTTG 2450
Query 2127 AATGCGCATGGTTCTCGTTTGCAAAGTCTGCCAGACATGGCTAATTTAGAATTTCTTAAA 2186
||||| ||||| ||| |||||| |||||||||| |||||||||||||||||||||| |||
Sbjct 2451 AATGCACATGGATCTTGTTTGCGAAGTCTGCCAAACATGGCTAATTTAGAATTTCTCAAA 2510
Query 2187 GTTCTTGATCTCTCCTG-TTGCTCAAAGCTCAAGA-TCATTCAGGGTTTCCCACGAAACC 2244
|||||||||||||| || ||||||| ||||| ||| | ||||||||||| || || ||||
Sbjct 2511 GTTCTTGATCTCTC-TGGTTGCTCAGAGCTCGAGACT-ATTCAGGGTTTTCCTCGGAACC 2568
Query 2245 TGAAAGAGTTATACCTTGCTGGCACTGGGTTAAGAGAAGTGCCACAACTTCCTTTATGTC 2304
| ||||||||||| ||||||||||| ||||||||||||||| |||||||||||| | |
Sbjct 2569 TAAAAGAGTTATATTTTGCTGGCACTACGTTAAGAGAAGTGCCCCAACTTCCTTTAAGCC 2628
Query 2305 TAGAACTCTTGAATGCACATGG 2326
|||| ||||||||||||||||
Sbjct 2629 TAGAGGTCTTGAATGCACATGG 2650
Score = 582 bits (315), Expect = 5e-165
Identities = 419/468 (90%), Gaps = 12/468 (3%)
Strand=Plus/Plus
Query 2443 TCAACAAAGCTCCGACTTTCAGCTTCAGTGCGCCCTCACATACAAATCAAAATGCCACAC 2502
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2788 TCAACAAAGCTCCGACTTTCAGCTTCAGTGCGCCCTCACATACAAATCAAAACGCCACAT 2847
Query 2503 TTGATCTGCAACCAGGATCTTCTGTAATGACACAACTAAATCCTTCTTGGAGGAACACGC 2562
||||||||||| ||||||||||||||||||||| |||||||| ||| |||||||||||||
Sbjct 2848 TTGATCTGCAATCAGGATCTTCTGTAATGACACGACTAAATCATTCATGGAGGAACACGC 2907
Query 2563 TTGTGGGCTTTGCTATGCTGGTGGAAGTTTCATTTTCAGATGATTACTCTGATGTTACTG 2622
||||||| |||| |||||||||||||||| ||||| | || || |||| ||||| ||| |
Sbjct 2908 TTGTGGGATTTGGTATGCTGGTGGAAGTTGCATTTCCCGAGGACTACTGTGATGCTACAG 2967
Query 2623 GT-TTAGGCATACGCTGTGTTTGCAGATGGAAAAACGAGGAAGGCCACTCTCAG-AGGAT 2680
| || |||||| | |||||||||||||||| ||| | ||||||| |||| | |||||
Sbjct 2968 ATGTT-GGCATAAGTTGTGTTTGCAGATGGAGCAACAAAGAAGGCCGCTCT-TGTAGGAT 3025
Query 2681 AGAAAG-ATATTTGCATTGTTGGGCTA-CAGGGGAAGCTGTTCCAAATGTTCAAAAGGAT 2738
|||||| | |||| ||||||||||| | || || ||| ||||||||| |||| |||||||
Sbjct 3026 AGAAAGAAAATTT-CATTGTTGGGC-ACCATGGCAAGTTGTTCCAAAAGTTCGAAAGGAT 3083
Query 2739 CATACGTTTGTCTTTTGTGATGTCAACATGCGCCCAAGTACCGGTGAAGGAAATGACCCT 2798
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3084 CATACGTTTGTCTTTAGTGATGTCAACATGCGCCCAAGTACCGGTGAAGGAAATGACCCT 3143
Query 2799 GATATCTGGGCTG-ACTTAGTTGTATTTGAGTTCTTTCCTATCAATCAGCAGACAAATTG 2857
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3144 GATATCTGGGCTGGA-TTAGTTGTATTTGAGTTCTTTCCTATCAATCAGCAGACAAAGTG 3202
Query 2858 TCTAAATGATAG-TTGCAGAGTGACAAGATGTGGAGTCTATGTAATAA 2904
|||||||||||| || || ||||| ||||||||||||| ||||||||
Sbjct 3203 TCTAAATGATAGGTT-CACAGTGAGAAGATGTGGAGTCCGTGTAATAA 3249
Score = 440 bits (238), Expect = 3e-122
Identities = 544/688 (79%), Gaps = 36/688 (5%)
Strand=Plus/Plus
Query 14 CGAAATCATGAACGATTGCGAAAGGGCTTCGCCAATT-GTCTACATCAGCTGTGTAGCCG 72
||||||||||| | |||| |||| || | | |||| || | ||||||||| |||| |
Sbjct 68 CGAAATCATGACCAATTGTGAAAAGGATGAG-GAATTCGTGTGCATCAGCTGCGTAGAAG 126
Query 73 AGGTACGATACTCCTTCGTCAGCCACCTCT-TGGACGCTCTCAGCCGGAAAGGCATCAAT 131
||||||| ||||| ||||| |||||||||| | || |||||| | || |||||||| |||
Sbjct 127 AGGTACGGTACTCTTTCGTGAGCCACCTCTCT-GAAGCTCTCCGTCGAAAAGGCATAAAT 185
Query 132 GATGT-GT--T---TGTGGATAGCGATGATGTGCTTTCCGAGGAGGCCCAGGGAAAGGTA 185
|||| || | ||| |||| ||||||| |||||| | ||||| | |||| |||| |
Sbjct 186 AATGTGGTCGTAGATGTAGATATCGATGATCTGCTTTTCAAGGAGTCTCAGGCAAAGATC 245
Query 186 GAGAGATCTAAGATTTGTGTGATAGTTTTACCCGGAAACCGT-A------C--GGTGTCC 236
|||| | || | ||| |||||| ||||||||||||||| || | | ||| |
Sbjct 246 GAGAAAGCTGGGGTTTCTGTGATGGTTTTACCCGGAAACTGTGATCCTTCCGAGGTATGG 305
Query 237 CTTGAGAAGCTCGTGAAGGTTCTCGAGTGCCAGAGGAACAAC---GACCAGGTGGTGGTG 293
||||| ||| ||| ||||||||||||||||| ||||||||| ||||||| ||||||
Sbjct 306 CTTGACAAGTTCGCCAAGGTTCTCGAGTGCCAAAGGAACAACAAGGACCAGGCGGTGGTT 365
Query 294 CCGGTGCTGCACGGAGACGGTCCATTACAGGG-TGAATGGCTTAGGGAACTCGAATTGAG 352
| ||| || |||| ||| ||| ||||| ||| |||||||||| || || || || ||
Sbjct 366 TCAGTGTTGTACGGTGACAGTCTATTAC-GGGACCAATGGCTTAGCGAGCTGGATTTCAG 424
Query 353 GGGATTATCAC-CAGT--CC-A--CAGGAAGGAATGCAGTGACTCCAAACTAGTAGAAGA 406
|| ||||||| | | || | |||||||||||| |||||||| | ||| ||||||||
Sbjct 425 AGGCTTATCACGAATTCACCAATCCAGGAAGGAATGTAGTGACTCTATACTTGTAGAAGA 484
Query 407 GATTGTGAGAGATGTGGATGAGAAGCTCTTTTATATGGGACGAGTTGGAATCTACTCAAA 466
|||||||||||||||| | |||| || ||||||| | |||||| |||||||||| || ||
Sbjct 485 GATTGTGAGAGATGTGTACGAGACGCACTTTTATGTTGGACGAATTGGAATCTATTCGAA 544
Query 467 GGTGGTGGAGGTAGAAAATATGATTAACAAGCAACCGTTGGGCATCCGCTGTGTTGGAAT 526
| || ||||| | ||||| ||| |||||||||||||| | |||||||| |||||||||||
Sbjct 545 GCTGCTGGAGATTGAAAACATGGTTAACAAGCAACCGATAGGCATCCGTTGTGTTGGAAT 604
Query 527 TTGGGGTATGCCTGGCATAGGCAAGGCTACACTTGCAAAAGCGGT-TGTTGACCAGATGT 585
||||||||||||||||||||| ||| | |||||||| ||||| || | ||||||| ||||
Sbjct 605 TTGGGGTATGCCTGGCATAGGAAAGACAACACTTGCTAAAGCAGTCT-TTGACCAAATGT 663
Query 586 CTGGCGGATTTGATGCT-CATTGTTTTATCGAAGACTATGACACATCTATTCATGAGAAC 644
|| ||| ||||||||| | ||||||||||||||||||||||| ||| |||||||||||
Sbjct 664 CTAGCGCCTTTGATGCTTC-TTGTTTTATCGAAGACTATGACAAATCAATTCATGAGAAG 722
Query 645 AGAGTTTATCGTATTT-TGGTGGAACAA 671
| ||||| || || ||| |||||||
Sbjct 723 GGTCTTTATTGT-TTGCTGGAGGAACAA 749
> AT5G45050.1 | Symbols: TTR1, ATWRKY16, WRKY16 | Disease resistance
protein (TIR-NBS-LRR class) | chr5:18176914-18181805 REVERSE
LENGTH=4221
Length=4221
Score = 1055 bits (571), Expect = 0.0
Identities = 928/1097 (85%), Gaps = 37/1097 (3%)
Strand=Plus/Plus
Query 723 GAGGAGAATCTCCATGAGCTATCAATGAAAGTAATAAAATATTCTAATGGAAACCCGTTG 782
||| |||||||||| ||| | ||||||||||| || |||||| ||||||| | || ||
Sbjct 946 GAGCAGAATCTCCACGAGGTGTCAATGAAAGTTATTAAATATGCTAATGGCCATCCATTA 1005
Query 783 GCTATCAGTATTTATGGTAAAGAGCTGA-AGGG--TAAAAGACCATCAGAAATGGAGACT 839
||| ||| | | ||||| | ||| |||| ||| ||||||||| |||||||||||| |
Sbjct 1006 GCTCTCAATCTCTATGGCAGAGAACTGATGGGGAAGAAAAGACCACCAGAAATGGAGA-T 1064
Query 840 -GCATTCCTCCAAA-TCAAGGGATATCCTCCTTCTAAGATTGTTGATGCAATCAAGAGCA 897
|||||||| |||| |||||| || |||||| ||| ||||||||||||||||||||
Sbjct 1065 AGCATTCCT-CAAACTCAAGGAATGTCCTCCAGCTATTTTTGTTGATGCAATCAAGAGC- 1122
Query 898 GC-TATGGTACACTCAGTGACAGTGAAAAGAACAtttttttGGACATAGCTTGTTTCTTC 956
| |||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1123 TCGTATGACACACTCAATGACAGGGAAAAAAACATTTTTTTGGACATAGCTTGTTTCTTC 1182
Query 957 AAGGGAGACAATGTCGACTATGTGATGCAACTGCTTGAGGGTTGTGGtttttttCCACGT 1016
||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||| |
Sbjct 1183 CAGGGAGAAAATGTTGACTACGTGATGCAACTGCTTGAGGGTTGTGGTTTCTTTCCACAT 1242
Query 1017 GTAGGAATCGATGTTCTCGTTGAGAAGTGTTTGGTGACTATTTCAGAAAACCGAGTTG-A 1075
|| ||||| |||||||| || |||||| || |||||||||||||||||||||||| ||
Sbjct 1243 GTTGGAATTGATGTTCTTGTGGAGAAGAGTCTGGTGACTATTTCAGAAAACCGAG-TGCG 1301
Query 1076 GATGCATAATC-TGATCCAGGATGTTGGCCGAGGTATAATTAAT-GCCGAAAC-AGTTGA 1132
||||||||| | ||||||| |||||||||||| ||||| ||| | ||||| || |
Sbjct 1302 GATGCATAA-CTTGATCCAAGATGTTGGCCGACAAATAATAAATAG-AGAAACAAG-ACA 1358
Query 1133 GA-TAAAGGGGCACAGCAGACTGTGGGAACCTTGGAGTGTCAAATATTTATCAGAAGATA 1191
|| | ||| ||| ||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 1359 GACT-AAGAGGCGCAGCAGACTGTGGGAACCTTGCAGCATCAAATATTTATTAGAAGATA 1417
Query 1192 A-TTACTACAAA-GCAAATGGAGAACCCGAAACAACTTTCAAACGTGCTCAGGGCGTTGA 1249
| || | ||| | ||||| ||||| |||||||||| |||||||||||| | |||
Sbjct 1418 AGGAAC-A-AAACGAAAATGAAGAACAAAAAACAACTTTTGAACGTGCTCAGGTCCCTGA 1475
Query 1250 AGAGATTGAATGCATGTTTCTGGACACATCAAACTTAAGTTTTGATGTCAAGCCTGCTGC 1309
|||||| ||| ||||||||||||||||||||||||||||||||||| | |||| || |||
Sbjct 1476 AGAGATCGAAGGCATGTTTCTGGACACATCAAACTTAAGTTTTGATATTAAGCATGTTGC 1535
Query 1310 CTTTGAGAATATGCTGAACCTTAGATTGCTCAAGATTTACTGTTCCAATACTGAAGTCCA 1369
|||||| |||||| |||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 1536 CTTTGATAATATGTTGAACCTTAGATTGTTCAAGATTTACAGTTCCAATCCTGAAGTCCA 1595
Query 1370 TCATG-AAATCAATTTC-TCCGAAGGCGT-TCTCCA-TTCTCTTCCTAATGAGCTAAGAC 1425
||||| ||| ||||||| || ||||| | |||| | |||||||||||||| ||||||||
Sbjct 1596 TCATGTAAA-CAATTTCCTCA-AAGGC-TCTCTC-AGTTCTCTTCCTAATGTGCTAAGAC 1651
Query 1426 TCCTACACTGGGAGAACTATCCTCTGCAGTATT-TGCCTCAAAAATTTGATCCTAGGA-A 1483
|||| || |||||||||||||||||||||| || |||||||||| |||||||||| | |
Sbjct 1652 TCCTGCATTGGGAGAACTATCCTCTGCAGT-TTCTGCCTCAAAATTTTGATCCTAT-ACA 1709
Query 1484 CCTTGTTGAAATTAACATGCCATATAGTCAACTTCGGAAACTTTGGGGTGGAACCATTAA 1543
|||||||||||| |||||||| || || |||||| |||||||||||||||||||| |
Sbjct 1710 CCTTGTTGAAATCAACATGCCGTACAGCCAACTTAAGAAACTTTGGGGTGGAACCAAGGA 1769
Query 1544 CCTTGAGATGTTGAGGACGATCAAGCTTTGTCATTCACAGCAACTAGTTAATATTGACGA 1603
||| |||||||||| ||| |||| |||||||||||| || ||||||||| ||||||||||
Sbjct 1770 CCTGGAGATGTTGAAGACAATCAGGCTTTGTCATTCCCAACAACTAGTTGATATTGACGA 1829
Query 1604 TCTCTTAAAAGCTCAAAATCTTGAGGTAATTGATCTCCAAGGTTGTACAAGCCTTG-AGA 1662
||| |||||||||||||||||||||||| ||||||||||||| |||||||| || | |||
Sbjct 1830 TCTTTTAAAAGCTCAAAATCTTGAGGTAGTTGATCTCCAAGGCTGTACAAGACT-GCAGA 1888
Query 1663 GTTTCCCAGCAACAAGTCAATTGCTGCATCTACGAGTTGTCAATCTCTCAGGTTGCTCAA 1722
|||||||||| || |||||||||| ||| |||||||||| ||||||||||||||| ||
Sbjct 1889 GTTTCCCAGCCACCGGTCAATTGCTACATTTACGAGTTGTAAATCTCTCAGGTTGCACAG 1948
Query 1723 AGATCAAAATTTTCCCGGAGCTTCCACCAAATATTGAGACACTGCATCTCCAAGGTACTG 1782
||||||||| |||||| || |||| |||||||||||||||||| |||| || || ||||
Sbjct 1949 AGATCAAAAGTTTCCCAGAAATTCCCCCAAATATTGAGACACTGAATCTACAGGGGACTG 2008
Query 1783 GCATAAGAAAACTACCA 1799
| |||| | || |||||
Sbjct 2009 GTATAATAGAATTACCA 2025
Score = 494 bits (267), Expect = 3e-138
Identities = 555/692 (80%), Gaps = 28/692 (4%)
Strand=Plus/Plus
Query 47 AATTGTCTACATCAGCTGTGTAGCCGAGGTACGATACTCCTTCGTCAGCCACCTCTTGGA 106
||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| |
Sbjct 18 AATCGTCTACATCAGCTGCATAGAGGAGGTACGATACTCCTTCGTCAGCCACCTCTCCAA 77
Query 107 CGCTCTC-AGCCGGAAAGGCATCAATGATGTGTTTGTGGATAGCGATGATGT-GCTTTCC 164
|||||| ||| | ||||| | || ||||| || | |||||||||||| | |||||||
Sbjct 78 AGCTCTCCAGC-GAAAAGGTGTAAACGATGTCTTCATCGATAGCGATGAT-TCGCTTTCC 135
Query 165 GAGGAGGCCCAGGGAAAGGTAGAGAGATCTAAGATTTGTGTGAT-AGTTTTACCCGGAAA 223
| ||| | || || ||| |||||| ||| | ||| ||| || | ||||||| |||||
Sbjct 136 AACGAGTCTCAATCAATGGTCGAGAGAGCTAGGGTTTCTGTTATGA-TTTTACCAGGAAA 194
Query 224 CCGTACGGTGTCCCTTGAGAAGCTCGTGAAGGTTCTCGAGTGCCAGAGGAACAACGACCA 283
||||||||| || ||||| |||||||||||||||||||| ||||||| |||||| || ||
Sbjct 195 CCGTACGGTATCTCTTGACAAGCTCGTGAAGGTTCTCGATTGCCAGAAGAACAAAGATCA 254
Query 284 GGTGGTGGTGCCGGTGCTGCACGGAGACGG-TCCATTACAGGGTGAATGGCTTAGGGAAC 342
|||||||| |||||| || |||| | | | || || | || ||||||||||| | |
Sbjct 255 AGTGGTGGTTCCGGTGTTGTACGGTGTCAGATC-ATCAGAGACCGAATGGCTTAGCGCGC 313
Query 343 TCGAATT-GAGGGGATTATCACCAGT-C-C-A--C-AGGAAGGAATGCAGTGACTCCAAA 395
| || || || ||||| ||| |||| | | | | ||||| ||||| ||||||||| |
Sbjct 314 TGGA-TTCGAAAGGATTCTCATCAGTACACCATTCCAGGAAAGAATGTAGTGACTCCCAG 372
Query 396 CTAGTAGAAGAGATTGTGAGAGATGTGGATGAGAAGCTCTTTTATATGGGACGAGTTGGA 455
|| ||| |||||| ||| ||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 373 CTTGTAAAAGAGACTGTTAGAGATGTGTATGAGAAGCTCTTTTATATGGAACGAATTGGA 432
Query 456 ATCTACTCAAAGGTGGTGGAGGTAGA-AAATATGATTAACAAGCAACCGTTGGGCATCCG 514
|| || || ||| || ||||| | || ||| |||||||||||||||||||||| ||||||
Sbjct 433 ATATATTCGAAGCTGCTGGAGATTGAGAAA-ATGATTAACAAGCAACCGTTGGACATCCG 491
Query 515 CTGTGTTGGAATTTGGGGTATGCCTGGCATAGGCAAGGCTACACTTGCAAAAGCGGT-TG 573
|||||||||||||||||||||||||||||||||||| |||||||||| ||||| || |
Sbjct 492 TTGTGTTGGAATTTGGGGTATGCCTGGCATAGGCAAGACTACACTTGCTAAAGCAGTCT- 550
Query 574 TTGACCAGATGTCTGGCG-GATTTGATGCTCATTGTTTTATCGAAGACTATGAC-ACATC 631
||||||| |||||||| | | |||||||||||||| ||||| |||||||| || | | |
Sbjct 551 TTGACCAAATGTCTGGTGAG-TTTGATGCTCATTGCTTTATTGAAGACTAC-ACCAAAGC 608
Query 632 TATTCATGAGAACAGAGTTTATCGTATTT-TGGTGGAACAATTAATGAAAGACGATCCTG 690
|||||| ||||| | |||||| || || ||| |||||| || ||||||| || |||
Sbjct 609 TATTCAAGAGAAGGGTGTTTATTGT-TTGCTGGAGGAACAGTTTTTGAAAGAAAATGCTG 667
Query 691 GAAATGGCGGTACCATTACGAAGAT-GAGCTT 721
| | | |||||| ||||||| || ||||||
Sbjct 668 GTGCTAGTGGTACCGTTACGAA-ATTGAGCTT 698
Score = 309 bits (167), Expect = 1e-82
Identities = 245/282 (87%), Gaps = 7/282 (2%)
Strand=Plus/Plus
Query 1861 TGATACTCAAGCATTTAACAAGCCTGGAT--AAATGTAGCTCATC-TAGTCAAGATCTTG 1917
|||| ||||| | |||||||||||| ||| |||| |||| |||| || ||| ||| ||
Sbjct 2115 TGAT-CTCAAACCTTTAACAAGCCT-GATGAAAAT-TAGCACATCTTA-CCAAAATCCTG 2170
Query 1918 GCAGGCTTATTTGCTTGGAGCTGAAAGATTGCTCTCGTTTGCGAAGTCTGCCTAACATGG 1977
||| ||||| ||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 2171 GCAAGCTTAGTTGCTTGGAGCTGAATGATTGTTCTCGTTTGCGAAGTCTGCCAAACATGG 2230
Query 1978 CTCATTTAGAATTTCTGAATGTTTTTGATCTCTCTGGTTGCTCAAAGCTCAAGACTATTC 2037
| |||||||| |||| || | ||||||| |||||||||||| ||||| ||||||| |
Sbjct 2231 TTAATTTAGAACTTCTCAAAGCCCTTGATCTTTCTGGTTGCTCAGAGCTCGAGACTATCC 2290
Query 2038 GGGGTTTCCCTCCGAACCTGAAAGAGTTATATCTTGTTGGCACTGCAGTAAGAGAAGTGC 2097
||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2291 AGGGTTTCCCACGGAACCTGAAAGAGTTATATCTTGTTGGCACTGCAGTAAGACAAGTGC 2350
Query 2098 CACAACTTCCTCAAAGTCTAGAACTCTTGAATGCGCATGGTT 2139
||||||||||||||||||||||| |||| ||||| |||||||
Sbjct 2351 CACAACTTCCTCAAAGTCTAGAATTCTTTAATGCCCATGGTT 2392
> AT5G17890.1 | Symbols: CHS3, DAR4 | DA1-related protein 4 | chr5:5916970-5923355
FORWARD LENGTH=5082
Length=5082
Score = 115 bits (62), Expect = 2e-24
Identities = 183/239 (77%), Gaps = 18/239 (8%)
Strand=Plus/Plus
Query 387 GACTCCAAACTAGTAGAAGAGATTGTGAGAGATGTGGATGAGAAGCTCTTTTAT-ATG-- 443
|||||| ||||||| |||||||| || |||||||| ||| |||| | ||||| ||
Sbjct 487 GACTCCGAACTAGTGGAAGAGATCGTCAGAGATGTTTATGGGAAG--C-TTTATCCTGCA 543
Query 444 GGACGAGTTGGAATCTACTCAAAGG-TGGTGGAGGTAGAAAA-TATGATTAACAAGCAAC 501
| |||||||||||| ||| | ||| | | ||| ||||||| | || || ||||||||
Sbjct 544 GAACGAGTTGGAATTTACGC-GAGGCTACTAGAGATAGAAAAGT-TGCTTTACAAGCAA- 600
Query 502 CGTTGGG-CATCCGCTGTGTTGGAATTTGGGGTATGCCTGGCATAGGCAAGGCTACACTT 560
| | ||| |||||| | | |||||||||||||||||||||||||||||| | || |||
Sbjct 601 CATAGGGACATCCGAAGCATAGGAATTTGGGGTATGCCTGGCATAGGCAAGACGACGCTT 660
Query 561 GCAAAAGCGGT-TGTTGACCAGATGTCTGGCGGATT-TGATGCT-CATTGTTTTATCGA 616
|| ||||| || | || | || ||||| | |||| ||||||| | ||| || |||||
Sbjct 661 GCTAAAGCAGTCT-TTAATCACATGTCCA-CTGATTATGATGCTTC-TTGCTTCATCGA 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 147791814078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5