BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948493
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45240.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 359 5e-98
AT4G09430.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 58.4 2e-07
> AT5G45240.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) | chr5:18313706-18319089 FORWARD LENGTH=2439
Length=2439
Score = 359 bits (194), Expect = 5e-98
Identities = 478/610 (78%), Gaps = 39/610 (6%)
Strand=Plus/Plus
Query 81 GAATCTGAATTTCTAGAAGAAATCGCCAGG--GATGTGTTTGAGCAACTCT-ATCCAACA 137
||||| |||||| | ||||| |||| || ||||||| ||||| ||| | |||| ||
Sbjct 403 GAATCCGAATTTGTGGAAGAGATCG--TGGAAGATGTGTATGAGCTACT-TAATCCTACG 459
Query 138 GAAGAGATTGGGAT-C-CAGTCACTACTAAAGGAGATAGTAGAAAAC-TATCTATGCAAT 194
||||||||| |||| | ||| | | | || | |||| || ||||| | | |||||||
Sbjct 460 GAAGAGATTAGGATCCACAG-C-CGGC-AACTG-GATA-TACAAAACTTGT-TATGCAAG 513
Query 195 CAACCATGGGGCATTCGCACTATAGGCATTTTTGGTGAGCCTGGCATCGGAAAGACAACT 254
|||| ||||||| |||||||| |||||||||| ||| |||||||||| || ||||||||
Sbjct 514 CAACAATGGGGCCTTCGCACTCTAGGCATTTTAGGTAAGCCTGGCATTGGCAAGACAACA 573
Query 255 CTGGCTACAGCCTTCTTTCGCCGAAT--TTCTCATGGCTATGATGATTCT-TGTTTCATC 311
|| |||| ||| |||||||| |||| || | |||||||||| |||| ||| ||
Sbjct 574 CTTGCTAGAGCGGTCTTTCGCAGAATGGTT-GGA-GGCTATGATGCTTCTCACTTT-GTC 630
Query 312 AAAGATTTTCACA-AAGAATATACTGAGAAGAGACTTGAGTATTTGCCTCCTAAATACTT 370
|| ||||| |||| | | ||||| ||||| || ||||||| ||||||| || | | |||
Sbjct 631 AAGGATTTCCACACACG-ATATAGTGAGATGACACTTGAGCCTTTGCCTGCTCATTTCTT 689
Query 371 GGGTAAAACTTCAA-TGGAAAAGTTTGACCTAAA-AAGTTTTGATTCAC-AGCCAA-GCC 426
| ||| || |||| | ||| ||||||||||||| || || || || | || ||| |||
Sbjct 690 GTGTATGAC-TCAAGTCGAAGAGTTTGACCTAAACAA-TTCTGGCTC-CGAG-CAATGCC 745
Query 427 ACCG-CAAGAAGTGGGTTCTTG-TTGCTCTAGACGATGTGCAAAATGCTCAAGACGCGAA 484
| || ||| || ||||| ||| ||| |||||| ||||| | ||||| ||||||||||
Sbjct 746 ATCGCCAA-AAAAGGGTT-TTGATTGTTCTAGATGATGTACGAAATGAGCAAGACGCGAT 803
Query 485 GTCATTTCTTGGTGGATA-TGATAAGTTTGGTCCAGGGAGCTTGATCATCATAACTTCCA 543
||| |||||||| || | |||| ||||||||||||||||||||||||||||||| || |
Sbjct 804 GTCTTTTCTTGG-AGAAATTGATCAGTTTGGTCCAGGGAGCTTGATCATCATAACCTCAA 862
Query 544 GAAAGAGAAAAATTCTTGAGCAGTGCCATATGAATAAGATTTATGAGCTAAAAGGTCTAA 603
|| | ||| || | |||||| |||||||| | || ||||||||||||| || |||||||
Sbjct 863 GAGATAGACAAGTACTTGAGAAGTGCCATCTCAACGAGATTTATGAGCTTAACGGTCTAA 922
Query 604 ATGATGAAGATGCTCTAAAGCTGTTTACGAGATGTGCCTTTGGGAACAGA-GTGATAGAG 662
||| |||||||||| ||||| || ||||| |||||||||||||| ||| ||||||| |
Sbjct 923 ATGGTGAAGATGCTAGGAAGCTATTCACGAGGTGTGCCTTTGGGAA-AGATGTGATAGTG 981
Query 663 CAGAATCTTC 672
|||||||||
Sbjct 982 AAGAATCTTC 991
> AT4G09430.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr4:5970932-5975375 FORWARD LENGTH=3120
Length=3120
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 509 GTTTGGTCCAGGGAGCTTGATCATCATAACT 539
|||||||||||||||||||||||||||||||
Sbjct 933 GTTTGGTCCAGGGAGCTTGATCATCATAACT 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70782768450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5