BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948494
Length=1538
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45050.1 | Symbols: TTR1, ATWRKY16, WRKY16 | Disease resista... 1768 0.0
AT5G45260.1 | Symbols: RRS1, ATWRKY52, SLH1 | Disease resistanc... 1282 0.0
> AT5G45050.1 | Symbols: TTR1, ATWRKY16, WRKY16 | Disease resistance
protein (TIR-NBS-LRR class) | chr5:18176914-18181805 REVERSE
LENGTH=4221
Length=4221
Score = 1768 bits (957), Expect = 0.0
Identities = 1312/1482 (89%), Gaps = 30/1482 (2%)
Strand=Plus/Plus
Query 22 ATGACCGAAAGTGAGCAAATCGTCTACATCAGCTGCTTAGAGGAGGTACGGTACTCCTTC 81
|||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1 ATGACCGAGAGTGAGCAAATCGTCTACATCAGCTGCATAGAGGAGGTACGATACTCCTTC 60
Query 82 GTCAGTCACATCTTCGAAGCTCT-CTGCCTAAAGCGCATAAATGATGTGTTCGTCGATAG 140
||||| ||| ||| | ||||||| | || |||| | |||| ||||| ||| |||||||
Sbjct 61 GTCAGCCACCTCTCCAAAGCTCTCCAGCGAAAAG-GTGTAAACGATGTCTTCATCGATAG 119
Query 141 CGACGA-TCTGCTTTCCAAGGAGGCGCAGGCAAAGGTCGAGAGAGCTAGGGTTTCCGTGA 199
||| || || ||||||||| ||| | || ||| ||||||||||||||||||||| || |
Sbjct 120 CGATGATTC-GCTTTCCAACGAGTCTCAATCAATGGTCGAGAGAGCTAGGGTTTCTGTTA 178
Query 200 TGATTTTACCCGGAAACCATACGGTACGC-CTTGACAAGCTCGTGAAGGTTCTCGAGTGC 258
|||||||||| ||||||| ||||||| | |||||||||||||||||||||||||| |||
Sbjct 179 TGATTTTACCAGGAAACCGTACGGTA-TCTCTTGACAAGCTCGTGAAGGTTCTCGATTGC 237
Query 259 CAGAGGACCAACGACCAGGTGGTGGTCCCGGTGTTGTACGGCAACAGAACAGT-AGAGGC 317
|||| || ||| || || |||||||| |||||||||||||| |||| || | |||| |
Sbjct 238 CAGAAGAACAAAGATCAAGTGGTGGTTCCGGTGTTGTACGGTGTCAGATCA-TCAGAGAC 296
Query 318 TGAATGGCTTAGCGCGCTGGATTCGAAAGGCTTCTCATCAGTTCACCGGTCCAGGAAGGA 377
||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| ||
Sbjct 297 CGAATGGCTTAGCGCGCTGGATTCGAAAGGATTCTCATCAGTACACCATTCCAGGAAAGA 356
Query 378 ATGCAGTGACGCCAAACTTGTAGAAGAGATTGTCAAAGATGTGTATGAGAAGCTCTTTTA 437
||| |||||| || | |||||| |||||| ||| | ||||||||||||||||||||||||
Sbjct 357 ATGTAGTGACTCCCAGCTTGTAAAAGAGACTGTTAGAGATGTGTATGAGAAGCTCTTTTA 416
Query 438 TACTGG-GCGAATTGGAATCTATTCGAAGCTGCTAGAGATTGA-AAACATGGTTAACAAG 495
|| ||| ||||||||||| |||||||||||||| |||||||| ||| ||| ||||||||
Sbjct 417 TA-TGGAACGAATTGGAATATATTCGAAGCTGCTGGAGATTGAGAAA-ATGATTAACAAG 474
Query 496 CAACCGATAGG-CATCCGTTGTGTTGGAATTTGGGGTATGCCTGGCATAGGAAAGACAAC 554
|||||| | || ||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 475 CAACCG-TTGGACATCCGTTGTGTTGGAATTTGGGGTATGCCTGGCATAGGCAAGACTAC 533
Query 555 ACTTGCTAAAGCAGTCTTTGACCAAATGTCTAGCGCCTTTGATGCTTC-TTGTTTTATCG 613
||||||||||||||||||||||||||||||| | | |||||||| || ||| ||||| |
Sbjct 534 ACTTGCTAAAGCAGTCTTTGACCAAATGTCTGGTGAGTTTGATGC-TCATTGCTTTATTG 592
Query 614 AAGACTATGA-CAAATCAATTCATGAGAAGGGTCTTTATTGTTTGCTGGAGGAACAATTT 672
||||||| | |||| | ||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 593 AAGACTA-CACCAAAGCTATTCAAGAGAAGGGTGTTTATTGTTTGCTGGAGGAACAGTTT 651
Query 673 TTGAAAGTAAA-GCCTGGTGCCGA-TGGTACCACAACGAAACTGAGCTTGCTTAGAAACA 730
||||||| ||| | |||||| | | ||||||| |||||| ||||||||||||| | |
Sbjct 652 TTGAAAGAAAATG-CTGGTG-CTAGTGGTACCGTTACGAAATTGAGCTTGCTTAGGGATA 709
Query 731 AATTACACAATAAGAGGGTTCTTGTTGTTCTTGATGACGTGCGCAATCCTTTGGCTGCAG 790
|||| ||||||||||||||||||||||||||||||| || |||| |||| ||| || |
Sbjct 710 GATTAAACAATAAGAGGGTTCTTGTTGTTCTTGATGATGTCCGCAGTCCTCTGGTTGTGG 769
Query 791 AGCCTTTCCTTGGA-GGTTTCGACTGGTTTGGTCCCAAAAGCCTAATCATCATAACCTCC 849
|| |||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 770 AGTCTTTTCTTGGAGGGTTT-GACTGGTTTGGTCCCAAAAGTCTAATCATCATAACCTCC 828
Query 850 AGAGATAAA-CAGGTGTTTCGCCTTTGTCGAGTCACTCAAATATATGATGTTCAGGGTTT 908
| ||||||| | ||||||||||||||||||||||| ||||||||| || |||||||||||
Sbjct 829 AAAGATAAATC-GGTGTTTCGCCTTTGTCGAGTCAATCAAATATACGAGGTTCAGGGTTT 887
Query 909 AAATGAGAAAGAAGCTATTCAGCTCTTCTCTTTGTGTGCGTCTATAGACGATATGGCAGA 968
|||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 888 AAATGAGAAAGAGGCTCTTCAACTCTTCTCTTTGTGTGCGTCTATAGACGATATGGCAGA 947
Query 969 GCAGAATCTCCATGAGGTGTCAATGAAAGTTATTAAGCATGCAAATGGACATCCATTAGC 1028
|||||||||||| ||||||||||||||||||||||| |||| ||||| |||||||||||
Sbjct 948 GCAGAATCTCCACGAGGTGTCAATGAAAGTTATTAAATATGCTAATGGCCATCCATTAGC 1007
Query 1029 TCTCAGTCTCTATGGCAGAGAGCTGAAGGGTaaaaaaaGACCGCCAGAAATGGAGACAGC 1088
||||| ||||||||||||||| |||| ||| || |||||||| ||||||||||||| |||
Sbjct 1008 TCTCAATCTCTATGGCAGAGAACTGATGGGGAAGAAAAGACCACCAGAAATGGAGATAGC 1067
Query 1089 ATTCCTCGAACTCAAGGAACGACCTCCAGCTGTTTTGGTTGATGCTATCAAGAGCTGC-T 1147
||||||| ||||||||||| | ||||||||| |||| |||||||| |||||||||| | |
Sbjct 1068 ATTCCTCAAACTCAAGGAATGTCCTCCAGCTATTTTTGTTGATGCAATCAAGAGCT-CGT 1126
Query 1148 ATGACACACTCAATGACAGGGaaaaaaaCATCTTTTTGGACATAGCTTGTTTCTTTCAGG 1207
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1127 ATGACACACTCAATGACAGGGAAAAAAACATTTTTTTGGACATAGCTTGTTTCTTCCAGG 1186
Query 1208 GAGAAAACGTCGACTACGTGATGCAACTGCTTGAGGGTTGTGGTTTCTTTCCACATGTTG 1267
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 GAGAAAATGTTGACTACGTGATGCAACTGCTTGAGGGTTGTGGTTTCTTTCCACATGTTG 1246
Query 1268 GAATCGATGTTCTTGTAGAGAAGTGTTTGGTGACTATTTTAGAAAACAGAGTGCAGATGC 1327
|||| ||||||||||| |||||| || |||||||||||| ||||||| |||||| |||||
Sbjct 1247 GAATTGATGTTCTTGTGGAGAAGAGTCTGGTGACTATTTCAGAAAACCGAGTGCGGATGC 1306
Query 1328 ATAACTTGATCCAAGATGTTGGCCGACAAATAATAAATAGAGAAACAGGAGAGACTAAGA 1387
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1307 ATAACTTGATCCAAGATGTTGGCCGACAAATAATAAATAGAGAAACAAGACAGACTAAGA 1366
Query 1388 GACGCAGCAGACTGTGGGAACCTTGCTGCATCAAATATTTGTTAGAAGATAACGCAGAGA 1447
| |||||||||||||||||||||||| ||||||||||||| ||||||||||| | | | |
Sbjct 1367 GGCGCAGCAGACTGTGGGAACCTTGCAGCATCAAATATTTATTAGAAGATAAGGAACA-A 1425
Query 1448 AA-GAAAATGCAGAACACAAAACAACTTTGGAACGTGCTCAG 1488
|| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct 1426 AACGAAAATGAAGAACAAAAAACAACTTTTGAACGTGCTCAG 1467
> AT5G45260.1 | Symbols: RRS1, ATWRKY52, SLH1 | Disease resistance
protein (TIR-NBS-LRR class) | chr5:18326203-18332609 FORWARD
LENGTH=4321
Length=4321
Score = 1282 bits (694), Expect = 0.0
Identities = 1243/1499 (83%), Gaps = 74/1499 (5%)
Strand=Plus/Plus
Query 33 TGAGCAAATCGTCTACATCAGCTGCTTAGAGGAGGTACGGTACTCCTTCGTCAGTCACAT 92
|||| || |||| | |||||||||| |||| |||||||||||||| ||||| || ||| |
Sbjct 95 TGAGGAATTCGTGTGCATCAGCTGCGTAGAAGAGGTACGGTACTCTTTCGTGAGCCACCT 154
Query 93 CTTC-GAAGCTCTCTG-CCTAAAGCGCATAAATGATGTGTTCGTCGA--TAG----CGAC 144
| || ||||||||| | | |||| |||||||| ||||| |||| || ||| |||
Sbjct 155 C-TCTGAAGCTCTCCGTCGAAAAG-GCATAAATAATGTGGTCGTAGATGTAGATATCGAT 212
Query 145 GATCTGCTTTCCAAGGAGGCGCAGGCAAAGGTCGAGAGAGCTAGGGTTTCCGTGATGATT 204
|||||||||| ||||||| | ||||||||| |||||| |||| ||||||| |||||| ||
Sbjct 213 GATCTGCTTTTCAAGGAGTCTCAGGCAAAGATCGAGAAAGCTGGGGTTTCTGTGATGGTT 272
Query 205 TTACCCGG-AA-----A-CCATAC--GGTACGCCTTGACAAGCTCGTGAAGGTTCTCGAG 255
|||||||| || | || | | |||| | ||||||||| ||| ||||||||||||
Sbjct 273 TTACCCGGAAACTGTGATCCTTCCGAGGTATGGCTTGACAAGTTCGCCAAGGTTCTCGAG 332
Query 256 TGCCAGAGG-AC--CAACGACCAGGTGGTGGTCCCGGTGTTGTACGGCAACAGAAC-AGT 311
||||| ||| || ||| ||||||| |||||| | ||||||||||| |||| | | |
Sbjct 333 TGCCAAAGGAACAACAAGGACCAGGCGGTGGTTTCAGTGTTGTACGGTGACAG-TCTATT 391
Query 312 A-GAGG-CTGAATGGCTTAGCGCGCTGGA-TTCGAAAGGCTTCTCATC-AGTTCACCGGT 367
| | || | |||||||||||| |||||| ||| | |||||| ||| | | |||||| |
Sbjct 392 ACG-GGAC-CAATGGCTTAGCGAGCTGGATTTC-AGAGGCTTATCA-CGAATTCACCAAT 447
Query 368 CCAGGAAGGAATGCAGTGACGCCAAACTTGTAGAAGAGATTGTCAAAGATGTGTATGAGA 427
||||||||||||| |||||| | | |||||||||||||||||| | ||||||||| ||||
Sbjct 448 CCAGGAAGGAATGTAGTGACTCTATACTTGTAGAAGAGATTGTGAGAGATGTGTACGAGA 507
Query 428 AGCTCTTTTATACTGGGCGAATTGGAATCTATTCGAAGCTGCTAGAGATTGAAAACATGG 487
|| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 508 CGCACTTTTATGTTGGACGAATTGGAATCTATTCGAAGCTGCTGGAGATTGAAAACATGG 567
Query 488 TTAACAAGCAACCGATAGGCATCCGTTGTGTTGGAATTTGGGGTATGCCTGGCATAGGAA 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TTAACAAGCAACCGATAGGCATCCGTTGTGTTGGAATTTGGGGTATGCCTGGCATAGGAA 627
Query 548 AGACAACACTTGCTAAAGCAGTCTTTGACCAAATGTCTAGCGCCTTTGATGCTTCTTGTT 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 AGACAACACTTGCTAAAGCAGTCTTTGACCAAATGTCTAGCGCCTTTGATGCTTCTTGTT 687
Query 608 TTATCGAAGACTATGACAAATCAATTCATGAGAAGGGTCTTTATTGTTTGCTGGAGGAAC 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 TTATCGAAGACTATGACAAATCAATTCATGAGAAGGGTCTTTATTGTTTGCTGGAGGAAC 747
Query 668 AATTTTTGAAAGTAAAGCCTGGTGCCGATGGTACCACAACGAAACTGAGCTTGCTTAGAA 727
|| ||||| | || || || | | |||| | ||||||||||| ||| |||
Sbjct 748 AACTTTTGCCGGGCAA---TGATG-C-A----ACCATTATGAAACTGAGCTCGCTCAGAG 798
Query 728 ACAAATT-ACACAATAAGAGGGTTCTTGTTGTTCTTGATGACGTGCGCAATCCTTTGGCT 786
||| ||| | ||| |||||| |||||||||||||| ||||||||||||||| || ||| |
Sbjct 799 ACAGATTGA-ACAGTAAGAGAGTTCTTGTTGTTCTCGATGACGTGCGCAATGCTCTGGTT 857
Query 787 GCAGAG-CCTTTCCTTG-GAGGTTTCGACTGGTTTGGTCCCAAAAGCCTAATCATCATAA 844
| ||| ||||| || | | ||||| |||||| | || ||| |||||| ||||||||||
Sbjct 858 GGGGAGTCCTTT-CTCGAGGGGTTT-GACTGGCTAGGACCCGGAAGCCTGATCATCATAA 915
Query 845 CCTCCAGAGATAAACAGGTGTTTCGCCTTTGTC-GAGTCACTCAAATATATGATGTTCAG 903
|||| ||||||||||| |||||| ||||||| | || ||| |||||||||||| || |||
Sbjct 916 CCTCTAGAGATAAACAAGTGTTTTGCCTTTG-CGGAATCAATCAAATATATGAGGTCCAG 974
Query 904 GGTTTAAATGAGAAAGAAGCTATTCAGCTCTTCTCTT--TGTGTGCGTCTAT--A-GACG 958
||||||||||||||||| ||| ||| || || |||| ||| ||||||||| | || |
Sbjct 975 GGTTTAAATGAGAAAGAGGCTCGTCAACT-TT-TCTTGCTGTCTGCGTCTATAAAGGAGG 1032
Query 959 ATATGGCAGAGCAGAATCTCCATGAGGTGTCAATGAAAGTTATTAAGCATGCAAATGGAC 1018
|||||| ||||||||||||||| ||| ||||| ||| ||| || || |||| ||||||
Sbjct 1033 ATATGGGAGAGCAGAATCTCCAGGAGTTGTCAGTGAGAGTAATAAATTATGCTAATGGAA 1092
Query 1019 ATCCATTAGCTCTCAGTCTCTATGGCAGAGAGCTGAAGGGTaa-aaaaaGACCGC-CAGA 1076
| || |||||| ||||| | ||||| ||||||||||| ||||| ||||| | | | ||||
Sbjct 1093 ACCCGTTAGCTATCAGTGTTTATGGAAGAGAGCTGAAAGGTAAGAAAAA-A-CTCTCAGA 1150
Query 1077 AATGGAGACAGCATTCCTCGAACTCAAG-GAACGACCTCCAGCT--GTTTTGGTTGATGC 1133
||||||||| ||||||||| |||||||| | ||| |||||| | | || || |||||
Sbjct 1151 AATGGAGACTGCATTCCTCAAACTCAAGCG-ACGTCCTCCATTTAAG-ATT-GTCGATGC 1207
Query 1134 TA-TCAAGAGCTGCTATGACACACTCAATGACAGGGaaaaaaaCATCTTTTTGGACATAG 1192
| | || ||| |||||||||||||| ||||| ||||| ||||| |||||||||||||
Sbjct 1208 -ATTTAAAAGCACCTATGACACACTCAGTGACAACGAAAAGAACATTTTTTTGGACATAG 1266
Query 1193 CTTGTTTCTTTCAGGGAGAAAACGTCGACTACGTGATGCAACTGCTTGAGGGTTGTGGTT 1252
|||||||||| ||||||||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct 1267 CTTGTTTCTTCCAGGGAGAAAATGTCAACTACGTGATACAACTGCTTGAGGGTTGTGGTT 1326
Query 1253 TCTTTCCACATGTTGGAATCGATGTTCTTGTAGAGAAGTGTTTGGTGACTATTTTAGAAA 1312
||||||||||||||| ||| ||||| ||||| || |||||| |||| ||||||| |||||
Sbjct 1327 TCTTTCCACATGTTGAAATTGATGTCCTTGTTGACAAGTGTCTGGTAACTATTTCAGAAA 1386
Query 1313 ACAGAGTGCAGATGCATAA-CTTGATCCAAGATGTTGGCCGACAAATAATAAATAGAGAA 1371
|| |||| | ||||||| || || ||| ||| | |||||| |||| |||||| |||||
Sbjct 1387 ACCGAGTTTGGTTGCATAAGCT-GACCCAGGATATCGGCCGAGAAATCATAAATGGAGAA 1445
Query 1372 ACAGGAGAGA-CTAAGAGACGCAGCAGACTGTGGGAACCTTGCTGCATCAAATATTTGTT 1430
|||| | ||| | | ||| ||||| ||||||||||||||||| ||||||||||||| ||
Sbjct 1446 ACAGTACAGATCGA-GAGGCGCAGAAGACTGTGGGAACCTTGGAGCATCAAATATTTATT 1504
Query 1431 AGAAGATAACGCAGAGAAAGAAAATGCAGAACAC-AAAACAACTTTGGAACGTGCTCAG 1488
|||| |||| | | | |||| ||||| ||||| | |||||||| || |||||||||||
Sbjct 1505 AGAATATAATGAACACAAAGCAAATGGAGAAC-CTAAAACAACCTTCAAACGTGCTCAG 1562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75903224040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5