BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948495
Length=3446
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45060.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 2918 0.0
AT5G45250.1 | Symbols: RPS4 | Disease resistance protein (TIR-N... 1037 0.0
> AT5G45060.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:18182038-18186495 FORWARD LENGTH=3926
Length=3926
Score = 2918 bits (1580), Expect = 0.0
Identities = 2796/3361 (83%), Gaps = 171/3361 (5%)
Strand=Plus/Plus
Query 51 CCACCACAACATCAAGTGTTCATTC-ATTTCAGTGGCCG-GGATTTGCGTTA-T-GGATT 106
||||||||||||||||| |||| || ||||| |||| | ||||| || | | |||||
Sbjct 31 CCACCACAACATCAAGTATTCA-TCAATTTCCGTGG-AGAAGATTTACG--ACTCGGATT 86
Query 107 CGTGAGCCATCTTG-AGAAGATCTT-GAAAGATC-ATAAAATTGAGGTCTTTGTCGACAG 163
||| |||||||| | ||||| | || |||| | | |||| || | ||||| ||||||
Sbjct 87 CGTAAGCCATCTAGTAGAAGCT-TTAGAAA-A-CGATAACATAAAAGTCTTCATCGACAA 143
Query 164 CGGTGAAGACAGAGGCGAACAC-CTAGAAA-ATCTATTGACGAGGATAGAGGAATCGC-G 220
| | ||||| |||||||| | |||||| | || || || | |||| | || || |
Sbjct 144 CTACGCAGACAAAGGCGAAC-CTTTAGAAACA-CTTTTAACCAAGATACATGACTC-CAA 200
Query 221 AATCGCTCTGGCTATCTTCTCTGAGAATTACACCGAATCAGA-ATGGTGCTTGAGAGAGC 279
||||||||| ||||||||||| | ||| ||||| |||||| | |||||||||||||||||
Sbjct 201 AATCGCTCTAGCTATCTTCTCCGGGAAGTACACTGAATCA-ACATGGTGCTTGAGAGAGC 259
Query 280 TAGCGAAGATCAAGGATTGTGTGGATGAAA--AAAGACTCGTGGCTATTCCCATCTTTTA 337
|||||| ||| || ||||||||||| |||| || ||| || |||||||| ||||| ||
Sbjct 260 TAGCGATGATAAAAGATTGTGTGGA-GAAAGGTAA-ACTTGTTGCTATTCCTATCTTCTA 317
Query 338 CAAAGTGGAGCCATCCACCGTGA-AATTCTT-GATGGGAGAGTTCGGTGATGCATTCAGG 395
||| || || |||||||| || | | | || || ||| ||||||||||||| || | |
Sbjct 318 CAAGGTAGATCCATCCACTGTTAGAGGTGTTAGA-GGG-CAGTTCGGTGATGCTTTTA-G 374
Query 396 A-AGC-TG-GCCAA-G-GA--TGATAAGAGGAAGAAAGAGTGGAAAGC-AGCTTTGAAAG 447
| | | || | || | || |||| | | |||||||||||||||| | ||||||| |||
Sbjct 375 AGATCTTGAG-GAACGTGATGTGATTA-A-GAAGAAAGAGTGGAAA-CAAGCTTTG-AAG 429
Query 448 -CGATTCCTGAG-TTTATGGGCATCCCGGTGCACGAGAAAAGCCCCGAGAGTGAAATACT 505
|||||||| | || || || ||| | || ||||| ||||| || ||||||||||||||
Sbjct 430 TGGATTCCTG-GCTTAATTGGTATCACTGTTCACGATAAAAGTCCTGAGAGTGAAATACT 488
Query 506 CaaaaaaaTTGTGGAGGAGGTTATGAAACAGCTGAAGGCGGTTAAA-TCTCCATTGGAGG 564
||| |||| || ||||||||| |||| | |||| | ||| | | |||||||||
Sbjct 489 CAACGAAATCGTTAAGGAGGTTAAGAAAGTGTTGAA----G--AAAGT-TTCATTGGAGG 541
Query 565 AAAGCCAAAA---CGCCTCTGAGGAACCTTTAGAATA-TAGCGACACTGGAACTTCCTTA 620
||||||||| | ||||| ||| || | | || | || |||||| || ||| ||
Sbjct 542 GAAGCCAAAAGGTGGTCTCTGTGGATCCATCACAA-AGTATTGACACTCTAAGTTCGGTA 600
Query 621 GGGGGTGCAAAGGATAAGACTTTTGGAATTTTTGGAATCGAACAACGCCT-AATGGAATT 679
|| |||| |||||||||||| |||||||||| ||||||| | || ||| ||
Sbjct 601 GGAGGTGAAAAGGATAAGAC---------TTTTGGAATCAAACAACGGTTGAA-GGAGTT 650
Query 680 GGAAGAGAAGCTGGAT-ATG--AAGGACACTAGAACTCTTATCACTGGAATTGTTGGGAT 736
|||||||||| ||||| || || ||| |||||| | ||| |||| ||||||||||
Sbjct 651 GGAAGAGAAGTTGGATCTTGTTAAATACAAGGGAACTCGTGTCATTGGAGTTGTTGGGAT 710
Query 737 GCCCGGAATTGGTAAAACTACACTGCTGAAGGAACTCAT-TGAGACGTGGAAGGGAAAGT 795
||| |||||||| ||||| |||||| |||| || ||| | | |||| ||| |||| ||||
Sbjct 711 GCCTGGAATTGGCAAAACCACACTGGTGAAAGAGCTC-TATAAGACCTGGCAGGGCAAGT 769
Query 796 TTTCTAGGCATGCGTTTG-TCGCTCAAATCCGTGAAAAGTCATATAAATACGA-TTTAGA 853
|||| ||| ||||| ||| ||| ||||||||||| |||||| |||| | | | |||||
Sbjct 770 TTTCGAGGTATGCG-TTGATCGATCAAATCCGTGGGAAGTCAAATAACTTC-AGGTTAGA 827
Query 854 GTGCTTGACCATA--TCGCTATTT-GAAAAGCTACTACCGGAGTTGAATAA-CC-C-CCA 907
||||||| || || | ||| ||| || ||||||||||||||||||||||| || | |
Sbjct 828 GTGCTTG-CC-TACTTTGCT-TTTAGAGAAGCTACTACCGGAGTTGAATAATCCTCAACT 884
Query 908 AG-TAG-A-T--AG-----T--ATAA--CA-AAGGGTCAACTGCGCAAACGCAAAGTTCT 952
|| ||| | | || | | || || ||||||| |||||| |||||||||||||
Sbjct 885 AGATAGTATTGAAGAACCATACAAAACTCATAAGGGTCTACTGCGTGAACGCAAAGTTCT 944
Query 953 TGTCGTTCTTGATGATGTTAGTGA-AAGGGAACAAATATATGCTCTTCTTGGGATATATG 1011
||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 945 CGTCGTCCTTGATGATGTTAGT-AGAAGGGAACAAATATATGCTCTTCTTGGGAAATATG 1003
Query 1012 ATCTTCAAAATCAACATGAGTGGATCAGTGATGGCAGCAGGATTGTCATTGCAACAAACG 1071
||||||| | | ||||||||||||||| |||||||||||||| |||||||||| ||||
Sbjct 1004 ATCTTCACAGTAAACATGAGTGGATCAAAGATGGCAGCAGGATCATCATTGCAACGAACG 1063
Query 1072 ACATGTCCTTATTAGAA-GGTCTCGTTCATGACACTTATGTGGTACGGCAATTGAACCAC 1130
| || |||| ||| ||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1064 ATATCTCCTCATT-GAAGGGTCTCGTTCATGACACTTATGTGGTTCGGCAATTAAACCAC 1122
Query 1131 AAAGACGGCATGGATCTTTTTCACCATCATGCCTTT-GGTACTAATCAGGCCATTCCT-- 1187
| ||||||| | | ||||||| | |||| |||||| || | |||| |||| ||||
Sbjct 1123 AGAGACGGCTTACAACTTTTTCGCTATCACGCCTTTCATTA-TGATCAAGCCACTCCTCC 1181
Query 1188 GAA----GATCGCATGAAGCTTTCAGATGAGTTTGTGCATTATGCAAGAGGCCATCCACT 1243
|| ||| |||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1182 AAAGGTGGATTTCATGAAGCTTTCTGATGAGTTTGTGCATTATGCTAGAGGCCATCCACT 1241
Query 1244 AGCTCTCAAAATATTGGGTACAGAGCTTTGTGAGAAAGATATGAAGCATTGGGAAACAAA 1303
|||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||
Sbjct 1242 AGCTCTCAAAATATTGGGTAGAGAGCTTTATGAGAAAAATATGAAGCATTGGGAAACAAA 1301
Query 1304 ACTGAAAATACTCGCTCAAAAG-CCCAAAACTTATATTAGACAAGTGGTGCAAGTAAGTT 1362
||||| |||||| |||| |||| |||| ||||||||| || |||| |||||||||||||
Sbjct 1302 ACTGATAATACTTGCTC-AAAGTCCCACCACTTATATTGGAGAAGTCGTGCAAGTAAGTT 1360
Query 1363 ATAACGAATTGAGTTCGGCGCAGAAAGATGCATTTCTCGACATAGCATGTTTCAGGTCGC 1422
|| | |||||||||| |||||||||||||||||||||||||||||| |||||||| || |
Sbjct 1361 ATGATGAATTGAGTTTGGCGCAGAAAGATGCATTTCTCGACATAGCTTGTTTCAGATCAC 1420
Query 1423 AGGATGTGGATTATGTAGAAAGTTTACTGGTTTCATCTGACCCCGGATCTGCTGAAGCAA 1482
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1421 AGGATGTGGATTATGTAGAAAGTTTACTGGTTTCGTCTGACCCTGGATCTGCTGAAGCAA 1480
Query 1483 TTCAAGTTCTCAAGAATAAGTTCCTGATTGATACTTGTGACGGTCGGGTGGAGATGCATG 1542
| ||| |||||||||||||||| |||||||||| |||||||| || |||||||||||||
Sbjct 1481 TAAAAGCTCTCAAGAATAAGTTCTTGATTGATACATGTGACGGCCGTGTGGAGATGCATG 1540
Query 1543 ATCTATTGCATACATTTTCTAGGAAACTTGATCTTAAAGGTGATAGCAAAGAACGGAGAT 1602
||||| || ||| |||||||||| |||||||||||||| | || || || | | |
Sbjct 1541 ATCTACTGTATAGATTTTCTAGGGAACTTGATCTTAAA-G-CAT-CCACTCAA--G-G-T 1593
Query 1603 TGTGGCGCCATAAAG-ACATAATCGAGGAACG-C---AC--AGTTAATCTACTGCAGAAC 1655
|| || | || | | | || | || || | || | ||||| ||| ||||||
Sbjct 1594 GGTAGC-AAACAACGAAGGTTAT-G-GGTCCGTCAAGACATAATTAATGTACAGCAGAAA 1650
Query 1656 AGAATTGGAGCTGCCAATGTCAGAGGTGTCTTCCTAGATTTGTCTGAAGTGCAGGACGAA 1715
| ||| |||||||| ||||| |||||| | ||||||||||||||||||||| ||| |||
Sbjct 1651 ACAATGGGAGCTGCAAATGTTAGAGGTATTTTCCTAGATTTGTCTGAAGTGAAGGTTGAA 1710
Query 1716 ATC-AGCTTAGACCGTGAACATTTGaaaaaaaTGCGCAATCTCCGGTATCTCAAGTTCTA 1774
| | ||||||||||||||||| || || || |||||||||||||||||||||||||| ||
Sbjct 1711 A-CAAGCTTAGACCGTGAACACTTCAAGAATATGCGCAATCTCCGGTATCTCAAGTTATA 1769
Query 1775 CAATTCTCATTGTCATCAGGAATGTAAAACCAACGCTAAGATTAATATTCCCGATGAACT 1834
|||||| ||||| | ||| |||||| |||||| |||||| || || || |||| |||
Sbjct 1770 CAATTCACATTGCCCTCACGAATGTCTAACCAATAATAAGATAAACATGCCTGATGGACT 1829
Query 1835 TGAGCTACCATTGAAAGAGGTCCGATGCCTCCACTGGCTAAAATTCCCATTAAAAGAAGT 1894
||||||||||||||||||||| |||||||| |||||||| |||||||||||| | ||| |
Sbjct 1830 TGAGCTACCATTGAAAGAGGTTCGATGCCTTCACTGGCTGAAATTCCCATTAGAGGAACT 1889
Query 1895 TCCAAACGATTTTAACCCGATTAATCTCGTCGACCTTAAGCTGCCCTTCAGCAAGATTGA 1954
||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 1890 TCCAAACGATTTTGACCCGATTAATCTCGTCGACCTTAAGCTGCCATACAGTGAGATTGA 1949
Query 1955 AAGACTTTGGGATGGTGTTAAGGATACACCAGTCTTAAAGTGGGTCGATCTCAATCACTC 2014
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1950 ACGACTTTGGGATGGTGTTAAGGATACACCAGTCTTAAAATGGGTCGATCTCAATCACTC 2009
Query 2015 AAGTCTGTTGAGCAGCTTGTCAGGATTATCTAAGGCTCCAAATCTTCAAGGACTGAACCT 2074
|||| |||| ||||||||||||||||||| ||||||| |||||||||| ||||||||||
Sbjct 2010 AAGTAAGTTGTGCAGCTTGTCAGGATTATCAAAGGCTCAAAATCTTCAAAGACTGAACCT 2069
Query 2075 TGAAGGGTGCACAAGTCTTGAATCTCTTGGAGATGTGGATTCGAAATCACTGAAAACTCT 2134
|||||||||||||||||||||||||||| |||||||| ||| || || ||||||||||
Sbjct 2070 TGAAGGGTGCACAAGTCTTGAATCTCTTCGAGATGTGAATTTGACGTCTTTGAAAACTCT 2129
Query 2135 CACCCTCAGCGGCTGCACAAGCTTCAAGGAATTTCCGTTGATTCCAGAAAATCTAGAAGC 2194
|||||||||| |||| ||| ||||||||||||||| ||||||||||||||| || ||||
Sbjct 2130 CACCCTCAGCAACTGCTCAAACTTCAAGGAATTTCCATTGATTCCAGAAAATTTAAAAGC 2189
Query 2195 TTTACACTTAGACAAAACAGCAATAAGTCAACTTCCTGACAACATAGTGAACCTCCAGAA 2254
|||| |||| ||| ||| | ||||||||||||||||||||| | | |||||| || ||
Sbjct 2190 TTTATACTTGGACGGGACATCGATAAGTCAACTTCCTGACAACGTGGGGAACCT-CAAAA 2248
Query 2255 -ACTTGTCTTATTGACTATGAAGGAATGCAAAATGCTGGAGAAC-ATCCCGA-CAGAGGT 2311
|||||||||||||| ||||||||| |||||| |||||||| || ||||| | | | ||
Sbjct 2249 GACTTGTCTTATTGAATATGAAGGACTGCAAAGTGCTGGAG-ACTATCCCTACCTG-TGT 2306
Query 2312 TGA-TGAGCTGACAGCTCTTCAAAAACTGGTACTCTCTGGTTGCTT-AAAGCTCAAGGAA 2369
| | |||||||| | ||||||||||||| ||||| || ||||| || |||||||||||||
Sbjct 2307 T-AGTGAGCTGAAAACTCTTCAAAAACTTGTACTTTCAGGTTG-TTCAAAGCTCAAGGAA 2364
Query 2370 TTTCCA-ACAATCAACAAGAGCCCTTTAAAGATTTTATTTCTGGATGGGACATCCATCAA 2428
|||||| | ||||||||||||| ||||||| |||||| |||| |||||||||||||||||
Sbjct 2365 TTTCCAGA-AATCAACAAGAGCTCTTTAAAAATTTTACTTCTAGATGGGACATCCATCAA 2423
Query 2429 AACGGTGCCGCAGTTACCCTCAGTGCAGTATTTATACTTAGGCAGAAATGATGAGATCAG 2488
|||| ||||||||||||||||||| |||||||||| |||| ||||||||||| | |||
Sbjct 2424 AACGATGCCGCAGTTACCCTCAGTACAGTATTTATGCTTAAGCAGAAATGATCATCTCAT 2483
Query 2489 CTACCTTCCAGCTGGCACCAATCAACTATT-TCAGTTAACATGGCTGGATTTGAAGCATT 2547
||||||||||||||||| ||||||| | || |||||||||| |||||||||||||| |||
Sbjct 2484 CTACCTTCCAGCTGGCATCAATCAAGT-TTCTCAGTTAACACGGCTGGATTTGAAGTATT 2542
Query 2548 GTAAG-AGTCTTACATCTATTCCAGAGTTGCCACCAAATCTTCACTACTTAGATGCACAC 2606
||| | || ||||||| | |||||||||||||||||| ||| || ||||||||||||||
Sbjct 2543 GTACGAAG-CTTACATATGTTCCAGAGTTGCCACCAACTCTCCAGTACTTAGATGCACAT 2601
Query 2607 GGCTGTAGCTCATTGAAGACTGTTGCCAAACCGCTGGCCCGTATCTTGCCGACCGTGCAG 2666
|||||||||||| |||||| |||||| ||||| |||||||||||| || | |||||||||
Sbjct 2602 GGCTGTAGCTCACTGAAGAATGTTGCAAAACCACTGGCCCGTATCATGTCAACCGTGCAG 2661
Query 2667 AACCATTGCAGTTTCAATTTTACCAACTGTTGTAAGCTGGAGCAAGCTGCAAAGGATGAA 2726
||||||| || ||||||||| ||||||||| |||| |||||||||||||||||||| |||
Sbjct 2662 AACCATTACACTTTCAATTTCACCAACTGTGGTAACCTGGAGCAAGCTGCAAAGGAGGAA 2721
Query 2727 ATCACATTGTATGCTCAAAGGAAATGTCAGTTGCTGTCATATGCTCGTAAACACTACAAT 2786
||||||| |||||||||||| |||||||||||||||||| |||| |||||||||||||||
Sbjct 2722 ATCACATCGTATGCTCAAAGAAAATGTCAGTTGCTGTCAGATGCACGTAAACACTACAAT 2781
Query 2787 GGGGGTCTTAGTTCAGAGGCTTTGTTCAGCACTTGCTTTCCTGGATGTGAGGTGCCTTCT 2846
| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2782 -GAGG-----GTTCAGAGGCTTTGTTCAGCACTTGCTTTCCTGGATGTGAGGTGCCTTCG 2835
Query 2847 TGGTTTTGTCATGAAGCGGTTGGATCTCTGTTAGGAC-GCAAACTCCCCCCACATTGGCA 2905
|||||| ||||||||||||||||||||||||| | | | ||||||| ||||||||||||
Sbjct 2836 TGGTTTGGTCATGAAGCGGTTGGATCTCTGTT-GCAAAGAAAACTCCTCCCACATTGGCA 2894
Query 2906 TGAAAAGAAGCTCTCTGGAATATCTCTCTGTGCTGTAGTCTCATTTCTTG-CTGGCCAAA 2964
||| |||| ||| ||||||||| |||| ||||||||||||||||||| || | | ||||
Sbjct 2895 TGACAAGAGGCTTTCTGGAATAGCTCTATGTGCTGTAGTCTCATTTCCTGACAG-CCAAG 2953
Query 2965 ATCAAATCAGCAGCTTCTCGGTGACATGCACCTTTAGTATAAAAGCTGAAGACAAATCTT 3024
||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 2954 ATCAACTCAGCTGCTTCTCGGTGACATGCACCTTTAAAATAAAAGCTGAAGACAAGTCTT 3013
Query 3025 GGATCCCCTTTACTTGCCCGGTAGGAAGTTGGACTAGAGATGGAGACAAGAAAGAAAAGA 3084
|| |||||||||||||||||||||||| |||||||||||| ||| |||||||||| | ||
Sbjct 3014 GGGTCCCCTTTACTTGCCCGGTAGGAATTTGGACTAGAGAGGGAAACAAGAAAGACAGGA 3073
Query 3085 TTGAGACAGATCATGTTTTTATAGCCTACATTACTTGCCCGCATACGATAAGGTGTCTTG 3144
||||| | ||||||||||| ||||||||||||| | |||| ||| | ||||||||||| |
Sbjct 3074 TTGAGTCGGATCATGTTTTCATAGCCTACATTAGTAGCCCACATTCAATAAGGTGTCTCG 3133
Query 3145 AAGACGA-GAACTCTAACAAATGCAATTTTACTGAAGCCTCCCTTGAGTTTACTGTGACA 3203
|||| || ||||||| | ||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 3134 AAGA-GAAGAACTCTGATAAATGCAATTTTAGTGAAGCCTCCCTTGAGTTTACGGTGACA 3192
Query 3204 GGTGATACAGGTG-TGATAGGAA-ATTTCAAGGTGTTGAGGTGCGGTTTGAGTTTGGTGT 3261
|||||||| ||| | || ||| ||| |||||| |||| ||| || |||||||||||||
Sbjct 3193 AGTGATACAAGTGGT-ATTGGAGTATT-CAAGGTTTTGAAGTGTGGATTGAGTTTGGTGT 3250
Query 3262 ATGaaaaagataaaaacaaaaaCAGTTCTCATGAGGTAAAGTTTGAC-TTGCCTGTTGAA 3320
||||||| || ||||||||||||||||||| ||||| ||||| ||| || |||||||||
Sbjct 3251 ATGAAAATGACAAAAACAAAAACAGTTCTCTTGAGGCAAAGTATGATGTT-CCTGTTGAA 3309
Query 3321 G 3321
|
Sbjct 3310 G 3310
> AT5G45250.1 | Symbols: RPS4 | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:18321914-18326022 REVERSE LENGTH=3654
Length=3654
Score = 1037 bits (561), Expect = 0.0
Identities = 1629/2123 (77%), Gaps = 159/2123 (7%)
Strand=Plus/Plus
Query 50 GCCACCACAACATCAAGTGTTCATTC-ATTTCAGT-GGCCGGGATTTGCGTTATG-GATT 106
|||||| || ||||| ||||||| || ||||| || || | |||||||| | ||||
Sbjct 36 GCCACCGCAGCATCAGGTGTTCA-TCAATTTCCGTGGGGC-AGATTTGCG-CCGGAGATT 92
Query 107 CGTGAGCCATCTTGAGAA-GATCTTGAAAGAT-CATAAAATTGAGGTCTTTGTCGACAG- 163
||| |||||||| | || | ||||||| | | || || | |||||| ||||| |
Sbjct 93 CGTCAGCCATCTCG-TAACGGCCTTGAAA-TTGAACAACATCAACGTCTTTATCGAC-GA 149
Query 164 CGGTGAAGACAGAGG-CGAACAC-CTAGAAAAT-CTATTGACGAGGATAGAGGAATCGC- 219
| |||||||||||| | ||| | |||| | | || ||| |||||||||||| || |
Sbjct 150 CTATGAAGACAGAGGTC-AAC-CTCTAG-ATGTACTGCTGAAGAGGATAGAGGAGTC-CA 205
Query 220 GAATCGCTCTGGCTATCTTCTCTGAG-AATTACACCGAATCAGAATGGTGCTTGAGAGAG 278
||||| | ||||||||||||| | | || |||||||| |||| |||||| ||||||||
Sbjct 206 AAATCGTTTTGGCTATCTTCTCCG-GCAACTACACCGAGTCAGTCTGGTGCGTGAGAGAG 264
Query 279 CTAGCGAAGATCAAGGATTGTGTGGATGAAAAAAGACTCGTGGCTATTCCCATCTTTTAC 338
|| | ||||||||| |||||| ||||||| || |||||| || ||||| ||||| |||
Sbjct 265 CTGGAGAAGATCAAAGATTGTACGGATGAAGGAACACTCGTTGCGATTCCAATCTTCTAC 324
Query 339 AAAG-TGGAGCCATCCACCG-T-GAAATTCTTGATGGGAGAGTTCGGTGAT-GCATTCAG 394
||| ||||||||||||||| | || | | |||| ||| ||||||||||| | ||| ||
Sbjct 325 -AAGCTGGAGCCATCCACCGTTAGAGA-T-TTGAAAGGAAAGTTCGGTGATAG-ATTTAG 380
Query 395 GAAG-CTGGCCAAGGATGATAAGAGGAAGAAAG-AGTGGAAAGCAGCTTTGAAAGCGATT 452
| || |||| |||| |||| ||||||| |||| | ||||| | |||||| || ||||
Sbjct 381 G-AGTATGGCTAAGGGTGATGAGAGGAA-AAAGAAATGGAAGGAAGCTTTTAACTTGATT 438
Query 453 CCTGAGTTTATGGGCATC-CCGGTGCACGAGAAAAGCCCCGAGAGTGA-AATACTCaaaa 510
||| | ||||||||||| | || || ||||||| |||||||| || | ||||
Sbjct 439 CCTAACATTATGGGCATCATCATTG-ACAAGAAAAGTGTGGAGAGTGAGAA-AGTCAATG 496
Query 511 aaaTTGTGGAGGAGGTTATGAA-ACAGCTGAAG-GCGGTTAAATCTCCATTGGAGGAAAG 568
|||||||| ||| || |||| ||||| | | ||| ||| ||| ||||| |||
Sbjct 497 AAATTGTGAAGGCGG---TGAAGACAGC-GTTGACCGG---AAT-ACCACCGGAGGGAAG 548
Query 569 CCAAAACGCC-TCTGAGGAACCTTTA-GAATATAGCGACACTGGAACTTCCTTAGGGGGT 626
|| |||||| || | || ||||| | | ||||| || |||||||||||| | || |
Sbjct 549 TCACAACGCCGTC-GTGGGTGCTTTAGGTA-ATAGCAACGCTGGAACTTCCTCA-GGAG- 604
Query 627 GCAAAGGATAAGACTTTTGGA-ATTTTTGGAATCGAACAACGCCTAATGGAATTGGAAGA 685
| || | ||| | | || | |||||||| ||||||||| ||| || ||||||||
Sbjct 605 AC-AA--A-AAG-C--AT-GAGACTTTTGGAAACGAACAACGGTTAAAAGATTTGGAAGA 656
Query 686 GAAGCTGGAT-ATG--AAGGACACTAGAACTCTTATCACTGGAATTGTTGGGATGCCCGG 742
|||| ||||| || || ||| |||||| ||||| |||| ||||||||||||||||
Sbjct 657 GAAGTTGGATCGTGATAAATACAAGGGAACTCGTATCATTGGAGTTGTTGGGATGCCCGG 716
Query 743 AATTGGTAAAACTACACTGCTGAAGGAACTCAT-TGAGACGTGGAAGGGAAAGTTTTCTA 801
|||||||||||| ||||| ||||| || || || | |||||||| |||| |||||||| |
Sbjct 717 AATTGGTAAAACCACACTCCTGAAAGAGCT-ATATAAGACGTGGCAGGGCAAGTTTTCGA 775
Query 802 GGCATGCGTTTGTCGCTCAAATCCGTGAAAAGT-CATATAAATACGATTTAGAGT-GCTT 859
|||||||| | ||| ||||||||||| ||||| || | | | || || || | ||||
Sbjct 776 GGCATGCGCTAATCGATCAAATCCGTGTAAAGTCCA-AGCACTTGGAGTTGGA-TCGCTT 833
Query 860 GAC-CATATCGCTATTTGAAAAGCTACTACCGGAGTTGAATAACCCCCAAGTAGA-TA-G 916
| | || || ||| || | || | | || |||| || | || || ||||| |
Sbjct 834 GCCTCAAAT-GCTCTTAGGCGAG-TTGT-CC-AAGTTAAACCATCCTCACGTAGACAATC 889
Query 917 T-ATA-A--CAAAGGGTCAACTGCGCAAACGCAAAGTTCTTGTCGTTCTTGATGATGTTA 972
| | | | || | ||||||||| |||||||||| ||||| || |||||||||||||
Sbjct 890 TCAAAGATCCATACAGTCAACTGCATGAACGCAAAGTGCTTGTTGTACTTGATGATGTTA 949
Query 973 GTGAAAGGGAACAAATATATGCTCTTCTTGGGATA-TATGATCTTCAAAATCAACATGAG 1031
|| |||||||||||||| ||||||||| || |||| || || | | || | | |||
Sbjct 950 GTAAAAGGGAACAAATAGATGCTCTTCGTGAGATACTA-GA-C-T--GGAT-TA-AGGAG 1002
Query 1032 TGGATCAGTGATGGCAGCAGGATTGTCATTGCAACAAACGACATGTCCTTATTAGAA-GG 1090
|| | || || || |||||| ||||||||||||||| ||||||||||||| | || ||
Sbjct 1003 -GG-TAAG-GAGGGAAGCAGGGTTGTCATTGCAACAAGCGACATGTCCTTAACA-AATGG 1058
Query 1091 TCTCGTTCATGACACTTATGTGGTACGGCAA-TTGAACCACAAAGACGGCATGGATCTTT 1149
| | ||| |||| ||||| |||| | || |||||||||| ||| || | | || |
Sbjct 1059 TTTGGTTGATGATACTTACATGGTTC-AAAATTTGAACCACAGAGATAGCTTACAACTAT 1117
Query 1150 TTCACCATCATGCCTTTGGT-ACTAATCAGGCCATTCCT-----G-AAGATCGCATGAAG 1202
||||| ||||||||||| | | | |||| |||| |||| | ||||| |||||||
Sbjct 1118 TTCACTATCATGCCTTTATTGA-TGATCAAGCCAATCCTCAAAAGAAAGATTTCATGAAG 1176
Query 1203 CTTTCAGATGAGTTTGTGCATTATGCAAGAGGCCATCCACTAGCTCTCAAAATATTGGGT 1262
|| ||||| | |||||| ||||| || ||||||||||||||||| |||||| ||||||||
Sbjct 1177 CTGTCAGAAGGGTTTGTACATTACGCCAGAGGCCATCCACTAGCCCTCAAAGTATTGGGT 1236
Query 1263 ACAGAGCTTTGTGAG-AAAGATATGAAGCATTGGGAA-AC-AAAACTGAA-AATACTCGC 1318
||||||| | || |||| |||| | |||| |||| | |||| |||| || ||| ||
Sbjct 1237 GGAGAGCTTAATAAGAAAAG-TATGGATCATT-GGAATTCGAAAA-TGAAGAA-ACTTGC 1292
Query 1319 TCAAAAG-CCCAAAACTTATATTAGACAAGTG--GTGCAAGTAAGTTATAACGAATTGAG 1375
| | || |||| || ||||| | | |||| | ||||| |||||| | |||||||
Sbjct 1293 AC-AGAGCCCCAGCCCTAATATT-GTC-AGTGTCTTCCAAGTGAGTTATGATGAATTGAC 1349
Query 1376 TTCGGCGCAGAAAGATGCATTTCTCGACATAGCATGTTTCAGGTCGCAGGATGTGGATTA 1435
| | ||||||||||||||||||||||||||||| |||||||| || ||||| ||||||
Sbjct 1350 TACAGCGCAGAAAGATGCATTTCTCGACATAGCCTGTTTCAGATCACAGGACAAGGATTA 1409
Query 1436 TGTAGAAAGTTTACTGGTTTCATCTGACCCCGGATCTGCTGAAGC-A--A-T----TCAA 1487
|||||||||| |||||| ||||||||||| || || |||||||| | | | ||||
Sbjct 1410 TGTAGAAAGTCTACTGGCTTCATCTGACCTTGGTTCGGCTGAAGCAATGAGTGCAGTCAA 1469
Query 1488 GT-TCTCAAGAATAAGTTCCTGATTGATACTTGTGACGGTCGGGTGGAGATGCATGATCT 1546
| ||||| | |||||||||||||| |||||||||| || || |||||||||||||||||
Sbjct 1470 ATCTCTCACGGATAAGTTCCTGATTAATACTTGTGATGGCCGAGTGGAGATGCATGATCT 1529
Query 1547 ATTGCATACATTTTCTAGGAAACTTGA--T-----C-T-TAA--AGG-TGATAGCAAAGA 1594
||| ||| |||||| ||| || |||| | | | ||| ||| || ||||| | |
Sbjct 1530 ATTATATAAATTTTCAAGGGAAGTTGATCTGAAGGCATCTAATCAGGATGGTAGCAGACA 1589
Query 1595 ACGGAGATTGTGGCGCCATAAAGACATAATCGAGGAACGCACAGTTAATCTACTGCAGAA 1654
|||||| |||||| |||| || |||||||| ||| | ||| | | ||| || |||| ||
Sbjct 1590 ACGGAGGCTGTGGCTCCATCAACACATAATCAAGGGAGGCATAATCAATGTATTGCAAAA 1649
Query 1655 CAGAATTG-GAGCTGCCAATGTCAGAGGTGTCTTCCTAGATTTGTCTGAAGTGCAGGACG 1713
| || || |||||||||||| |||||| | |||||||| |||||||||||| | ||||
Sbjct 1650 TA-AAATGAAAGCTGCCAATGTTAGAGGTATTTTCCTAGACTTGTCTGAAGTGGAAGACG 1708
Query 1714 AAATC-AGCTTAGACCGTGAACATTTGaaaaaaaTGCGCAATCTCCGGTATCTCAAGTTC 1772
||| | ||||||||||| || || || | ||| ||| | |||||||||||||||||||||
Sbjct 1709 AAA-CGAGCTTAGACCGCGACCACTTCATAAATATGGGAAATCTCCGGTATCTCAAGTTC 1767
Query 1773 TACAATTCTCATTGTC-ATCAGGAATGTAAAACCAACGCTAAGATTAATATTCCC-GATG 1830
|||||||| ||||||| | |||||||||||||||||| ||| || || || ||| |||
Sbjct 1768 TACAATTCCCATTGTCCA-CAGGAATGTAAAACCAACAATAAAATCAACAT-CCCTGATA 1825
Query 1831 AACTTGAGCTACCATTGAAAGAGGTCCGATGCCTCCACTGGCTAAAATTCCCATTAAAAG 1890
||||| |||||||||||||||| || ||||||||||||||||| ||||||||||| | |
Sbjct 1826 AACTTAAGCTACCATTGAAAGAAGTTCGATGCCTCCACTGGCTGAAATTCCCATTGGA-G 1884
Query 1891 A-AGTTCCAAACGATTTTAACCCGATTAATCTCGTCGACCTTAAGCTGCCCTTCAGC-AA 1948
| | ||||||||||||| ||||| |||||||| ||||||||||||||||||| ||| ||
Sbjct 1885 ACACTTCCAAACGATTTCAACCCAATTAATCTTGTCGACCTTAAGCTGCCCTACAGTGAA 1944
Query 1949 GATTGAA-AGACTTTGGGATGGTGTTAAGGATACACCA-GTCTTAAAGTGGGTCGATCTC 2006
|| ||| | ||||||||| |||| ||||| |||||| | ||||| |||||||||||||
Sbjct 1945 -ATGGAACA-ACTTTGGGAGGGTGACAAGGACACACCATG-CTTAAGGTGGGTCGATCTC 2001
Query 2007 AATCACTCAAGTCTGTTGAGCAGCTTGTCAGGATTATCTAAGGCTCCAAATCTTCAA-GG 2065
|||||||||||| |||| ||||||||||||| ||||| || ||| ||| |||||| ||
Sbjct 2002 AATCACTCAAGTAAGTTGTGCAGCTTGTCAGGGTTATCAAAAGCTGAAAAGCTTCAAAGG 2061
Query 2066 ACTGAACCTTGAAGGGTGCACAA 2088
||||||||||||| |||||||
Sbjct 2062 T-TGAACCTTGAAGGTTGCACAA 2083
Score = 950 bits (514), Expect = 0.0
Identities = 1016/1254 (81%), Gaps = 52/1254 (4%)
Strand=Plus/Plus
Query 2068 TGAACCTTGAA-GGGTGCACAAGTCTTGAATCTCTTGGAGATG-TGGATTCGAAATCACT 2125
|||| | |||| ||||| |||||||| ||||||||| ||| | || ||| || || ||
Sbjct 2135 TGAATC-TGAAGGGGTGTACAAGTCTCGAATCTCTTCCAGA-GATGAATTTGATTTCTCT 2192
Query 2126 GAAAACTCTCACCCTCAGCGGCTGCACAAGC-TTCAAGGAATTTCCGTTGATTCCAGAAA 2184
|||||| || || |||||||||||| ||| | || |||||||||||||||||| |||| |
Sbjct 2193 GAAAACACTTACTCTCAGCGGCTGCTCAA-CTTTTAAGGAATTTCCGTTGATTTCAGATA 2251
Query 2185 ATCTAGAAGCTTTACACTTAGACAAAACAGCAATAAGTCAACTTCCTGA-CAACATAGTG 2243
|| ||||| || || ||||||| |||||||||||||| |||||| | ||||| | |
Sbjct 2252 ATATAGAAACTCTATACTTAGATGGCACAGCAATAAGTCAGCTTCCT-ATGAACATGGAG 2310
Query 2244 AACCTCCAGAAACTTGTCT-TATTGACTATGAAGGAATGCAAAATGCTGGA-GAACA-TC 2300
|| || |||| |||||| | |||||| |||||| || ||||||||||| || ||| | ||
Sbjct 2311 AAGCTTCAGAGACTTGT-TGTATTGAATATGAAAGACTGCAAAATGCTAGAGGAA-ATTC 2368
Query 2301 CCGACAGAGGTTGATGAGCTGACAGCTCTTCAAAAACTGGTACTCTCTGGTTGCTTAAAG 2360
| | | | |||| |||||||| |||||||||| ||||| ||||||||| ||| |||||
Sbjct 2369 CAGGCCG-TGTTGGTGAGCTGAAAGCTCTTCAAGAACTGATACTCTCTGATTGTTTAAAT 2427
Query 2361 CTCAAGGAATTT-CCA-ACAATCAACAAGAGCCCTTTAAAGATTTTA-TTTCTGGATGGG 2417
||||| || ||| ||| | |||| ||| ||| |||||| |||||| ||| ||||||||
Sbjct 2428 CTCAA-GATTTTCCCAGA-AATCGACATTAGCTTTTTAAACATTTTACTTT-TGGATGGG 2484
Query 2418 ACATCCATCAAAACGGTGCCGCAGTTACCCTCAGTGCAGTATTTATACTTAGGCAGAAAT 2477
||| |||| || | |||| || |||||||||||||||||||| | |||| ||||||||
Sbjct 2485 ACAGCCATTGAAGTGATGCCACAATTACCCTCAGTGCAGTATTTGTGCTTAAGCAGAAAT 2544
Query 2478 GATGAGATCAGCTACCTTCCAGCTGGCACCAATCAACTATT-TC-AGTTAACATGGCTGG 2535
| | ||||||||| |||||| | ||| | || ||| || || || | |||| ||||||||
Sbjct 2545 GCTAAGATCAGCTGCCTTCCTGTTGGAATCAGTCAGCT-TTCTCAACTTAA-ATGGCTGG 2602
Query 2536 ATTTGAAGCATTGTAAGAGTCTTACATCTA-TTCCAGAGTTGCCACCAAATCTTCACTAC 2594
| ||||| |||||| |||||||||||| | |||||||||| |||||||||||||| | |
Sbjct 2603 ACCTGAAGTATTGTACGAGTCTTACATC-AGTTCCAGAGTTTCCACCAAATCTTCAGTGC 2661
Query 2595 TTAGATGCACACGGCTGTAGCTCATTGAAGACTGTTGCCAAA-CCGCTGGCCCGTATCTT 2653
|||||||||||||||||||| || ||||||| ||| |||| || ||||||||||| |
Sbjct 2662 TTAGATGCACACGGCTGTAGTTCGCTGAAGACAGTT-TCAAAGCCTTTGGCCCGTATCAT 2720
Query 2654 GCCGACCGTGCAGAACCATTGCAGTTTCAATTTT-ACCAACTGTTG-TAAGCTGGAGCAA 2711
||| || | ||||| |||| || ||| ||||| |||||||| || || ||||| |||
Sbjct 2721 GCCAACTGAACAGAATCATTCCACATTC-ATTTTCACCAACTG-TGAGAACCTGGAACAA 2778
Query 2712 GCTGCAAAGGATGAAATCACATTGTATGCTCAAAGGAAATGTCAGTTGCTGTCATATGCT 2771
||||||||||| |||||||||| |||||||||||||||||| ||| || | |||||||||
Sbjct 2779 GCTGCAAAGGAGGAAATCACATCGTATGCTCAAAGGAAATGCCAGCTGTTATCATATGCT 2838
Query 2772 CGTAAACACTACAATGGGGGTCTTAG-TTCAGAGGCTTTGTTCAGCACTTGCTTTCCTGG 2830
|| |||| |||||||||||||||| | |||||| |||||||||||||||||||||||||
Sbjct 2839 CGGAAACGCTACAATGGGGGTCTT-GTTTCAGAATCTTTGTTCAGCACTTGCTTTCCTGG 2897
Query 2831 ATGTGAGGTGCCTTCTTGGTTTTGTCATGAAGCGGTTGGATCTCTGTTAGGACGCAAA-C 2889
|||||| |||||||||||||||||||||||| | ||||||||| ||||| | | ||| |
Sbjct 2898 ATGTGAAGTGCCTTCTTGGTTTTGTCATGAAACAGTTGGATCTGAGTTAGAA-GTAAAAC 2956
Query 2890 TCCCCCCACATTGGCATGAAAAGAAGCTCT-CTGGAATAT-CTCTCTGTGCTGTAGTCTC 2947
||| ||||||||||||||| |||||||| | | || || | |||| ||||||||||||||
Sbjct 2957 TCCTCCCACATTGGCATGACAAGAAGCT-TGCCGGGAT-TGCTCTATGTGCTGTAGTCTC 3014
Query 2948 ATTTCTTG-CTGGCCAAAATCAAATCAGCAGCTTCTCGGTGACATGCACCTTTAGTA-TA 3005
|| ||||| | |||| ||||| ||||| |||| || ||||| |||||||||| | ||
Sbjct 3015 ATGTCTTGACCC-CCAAGATCAAGTCAGCCGCTTGTCAGTGACCTGCACCTTTAA-AGTA 3072
Query 3006 AAAGCTGAAGACAAATCTTGGATCCCCTTTACTTGCCCGGTAGGAAGTTGGACTAGAGAT 3065
|||| ||||||||| |||||| || | | |||||| || |||||||||||||| ||| ||
Sbjct 3073 AAAGATGAAGACAAGTCTTGGGTCGCATATACTTGTCCAGTAGGAAGTTGGACCAGACAT 3132
Query 3066 GGAGACAAGAAAGAAAAGATTGAGAC-AGATCATGTTTTTATAGCCTACATTACTTGCCC 3124
|||| | |||||| ||||||||| | ||| ||||| || || | |||| | ||||||
Sbjct 3133 GGAGGCGGGAAAGATAAGATTGAG-CTAGACCATGTCTTCATTGGATACACCAGTTGCCC 3191
Query 3125 GCATACGATAAGGTGTCTTGAAGACGAG-AACTCTA-ACAAATGCAATTTTACTGAAGCC 3182
||||| |||| |||| |||||| | | ||||| | | |||||||| ||| ||||||
Sbjct 3192 ACATACTATAAAATGTCATGAAGAAG-GTAACTC-AGATGAATGCAATCCTACCGAAGCC 3249
Query 3183 TCCCTTGAGTTTACTGTGACAGGTGATACAGGTGTGA-TAGGAAATTTCAAGGTGTTGAG 3241
|| ||| | |||||||||||||| | |||| ||| || | ||||| | |||||||||||
Sbjct 3250 TCTCTTAAATTTACTGTGACAGGAGGTACAAGTGAGAAT-GGAAAATACAAGGTGTTGAA 3308
Query 3242 GTGCGGTTTGAGTTTGGTGTATGaaaaagataaaaacaaaaaCAGTTCTCATGA 3295
||| ||||| ||||||||||||| || |||||| ||||||| ||| ||| |||
Sbjct 3309 GTGTGGTTTAAGTTTGGTGTATGCTAAGGATAAAGACAAAAATAGTGCTCTTGA 3362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 171520778117
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5