BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948499
Length=1664
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45240.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 701 0.0
> AT5G45240.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) | chr5:18313706-18319089 FORWARD LENGTH=2439
Length=2439
Score = 701 bits (379), Expect = 0.0
Identities = 568/658 (86%), Gaps = 18/658 (3%)
Strand=Plus/Plus
Query 145 CGCACGCTTGCGAAAATAGCAGAACTAAAAGGCCATGAGTATGATGAGGAATTCAGCGAA 204
|||| | |||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 343 CGCATGTTTGCGAAAATAGCAGAACTAAAAGGCCATGAGTATGATGAAGAATTAAGCGAA 402
Query 205 GAATCCGAAGTTGTGGAGGAGATC-TCGGAAGCAATAT-T-TGAGATACTTAACCCTACG 261
||||||||| ||||||| |||||| | ||||| | | | | |||| ||||||| ||||||
Sbjct 403 GAATCCGAATTTGTGGAAGAGATCGT-GGAAG-A-TGTGTATGAGCTACTTAATCCTACG 459
Query 262 GAAGAGATTGGGATCCACAGCCGGCAATTGGATATAGAAAACTTGCTATGCAAGCAACCA 321
||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||||| |
Sbjct 460 GAAGAGATTAGGATCCACAGCCGGCAACTGGATATACAAAACTTGTTATGCAAGCAACAA 519
Query 322 TGGGGCCTTCGCACTATAGGCATTTTCGGCAAGCCTGGCATTGGCAAGACTATACTGGCT 381
||||||||||||||| |||||||||| || |||||||||||||||||||| | ||| |||
Sbjct 520 TGGGGCCTTCGCACTCTAGGCATTTTAGGTAAGCCTGGCATTGGCAAGACAACACTTGCT 579
Query 382 AGAGCAGTCTTTCG-ACGAATGGGTGGAGGGTATGATGCTACTTACTTCGTCAAAGATTT 440
||||| |||||||| | |||||| |||||| ||||||||| || |||| ||||| |||||
Sbjct 580 AGAGCGGTCTTTCGCA-GAATGGTTGGAGGCTATGATGCTTCTCACTTTGTCAAGGATTT 638
Query 441 CCACACAAAACATAGTGAGAAAAGACTTGAACCTTTGCCCAG-TGATTTCTTTTGTCTGA 499
||||||| | ||||||||| | |||||| |||||||| | | ||||||| ||| |||
Sbjct 639 CCACACACGATATAGTGAGATGACACTTGAGCCTTTGCCT-GCTCATTTCTTGTGTATGA 697
Query 500 CTCCAA-TGGAAGAGTTTGACCTTAACAACTCTGGTTCCGAGCCATGCCATCGCCGAAAA 558
||| || | |||||||||||||| ||||| ||||| ||||||| ||||||||||| ||||
Sbjct 698 CTC-AAGTCGAAGAGTTTGACCTAAACAATTCTGGCTCCGAGCAATGCCATCGCCAAAAA 756
Query 559 AGGGTTCTTG-TTGTTCTAGATGATGTACAAAATGCTCAAGACGCTATGTCTTTTCTTGG 617
|||||| ||| |||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 757 AGGGTT-TTGATTGTTCTAGATGATGTACGAAATGAGCAAGACGCGATGTCTTTTCTTGG 815
Query 618 ACCGGTTGATCAGTTTGCACCAGGGAGCTTGATCATCATAACCTCAAGAGATAAATCA-G 676
| |||||||||||| |||||||||||||||||||||||||||||||||| | || |
Sbjct 816 AGAAATTGATCAGTTTGGTCCAGGGAGCTTGATCATCATAACCTCAAGAGATAGA-CAAG 874
Query 677 TTCTTGAGCAGTGCCAGATGAATGAGATTTATGAGCTTAAAGGTCTAAGTGATGAAGATG 736
| |||||| ||||||| | || ||||||||||||||||| ||||||| || ||||||||
Sbjct 875 TACTTGAGAAGTGCCATCTCAACGAGATTTATGAGCTTAACGGTCTAAATGGTGAAGATG 934
Query 737 CTCTGAAGCTATTGACAAGATGTGCCTTTGGGAATGGA-GTGATAGAGCAGAATCTTC 793
|| ||||||||| || || |||||||||||||| | | ||||||| | |||||||||
Sbjct 935 CTAGGAAGCTATTCACGAGGTGTGCCTTTGGGAAAG-ATGTGATAGTGAAGAATCTTC 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82228492710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5