BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948501
Length=1813
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45240.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 370 3e-101
AT4G09430.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 58.4 2e-07
> AT5G45240.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) | chr5:18313706-18319089 FORWARD LENGTH=2439
Length=2439
Score = 370 bits (200), Expect = 3e-101
Identities = 479/609 (79%), Gaps = 37/609 (6%)
Strand=Plus/Plus
Query 465 GAATCTGAATTTCTAGAAGAAATCG-CCAATGATGTGTTTGAGCAACTCT-ATCCAACGG 522
||||| |||||| | ||||| |||| || ||||||| ||||| ||| | |||| ||||
Sbjct 403 GAATCCGAATTTGTGGAAGAGATCGTGGAA-GATGTGTATGAGCTACT-TAATCCTACGG 460
Query 523 AAGAGATTGGGAT-C-CAGTCACTACTAAAGGAGATAGTAGAAAAC-TATCTATGCAATC 579
|||||||| |||| | ||| | | | || | |||| || ||||| | | ||||||| |
Sbjct 461 AAGAGATTAGGATCCACAG-C-CGGC-AACTG-GATA-TACAAAACTTGT-TATGCAAGC 514
Query 580 AACCATGGGGCATTCGCACTATAGGCATTTTTGGTGAGCCTGGCATCGGAAAGACAACTC 639
||| ||||||| |||||||| |||||||||| ||| |||||||||| || |||||||| |
Sbjct 515 AACAATGGGGCCTTCGCACTCTAGGCATTTTAGGTAAGCCTGGCATTGGCAAGACAACAC 574
Query 640 TGGCTACAGCCTTCTTTCGCCGAAT--TTCTCATGGCTATGATGATTCT-TGTTTCATCA 696
| |||| ||| |||||||| |||| || | |||||||||| |||| ||| |||
Sbjct 575 TTGCTAGAGCGGTCTTTCGCAGAATGGTT-GGA-GGCTATGATGCTTCTCACTTT-GTCA 631
Query 697 AAGATTTTCACA-AAGAATATACTGAGAAGAGACTTGAGTATTTGCCTCCTAAATACTTG 755
| ||||| |||| | | ||||| ||||| || ||||||| ||||||| || | | ||||
Sbjct 632 AGGATTTCCACACACG-ATATAGTGAGATGACACTTGAGCCTTTGCCTGCTCATTTCTTG 690
Query 756 GGTAAAACTTCAA-TGGAAAAGTTTGACCTAAA-AAGTTTTGATTCAC-AGCCAA-GCCA 811
||| || |||| | ||| ||||||||||||| || || || || | || ||| ||||
Sbjct 691 TGTATGAC-TCAAGTCGAAGAGTTTGACCTAAACAA-TTCTGGCTC-CGAG-CAATGCCA 746
Query 812 CCG-CAAGAAGTGGGTTCTTG-TTGCTCTAGACGATGTGCAAAATGCTCAAGACGCGAAG 869
|| ||| || ||||| ||| ||| |||||| ||||| | ||||| |||||||||| |
Sbjct 747 TCGCCAA-AAAAGGGTT-TTGATTGTTCTAGATGATGTACGAAATGAGCAAGACGCGATG 804
Query 870 TCATTTCTTGGTG-GATGTGATAAGTTTGGTCCAGGGAGCTTGATCATCATAACTTCCAG 928
|| |||||||| | || |||| ||||||||||||||||||||||||||||||| || ||
Sbjct 805 TCTTTTCTTGGAGAAAT-TGATCAGTTTGGTCCAGGGAGCTTGATCATCATAACCTCAAG 863
Query 929 AAAGAGAAAAATTCTTGAGCAGTGCCATATGAATAAGATTTATGAGCTAAAAGGTCTAAA 988
| | ||| || | |||||| |||||||| | || ||||||||||||| || ||||||||
Sbjct 864 AGATAGACAAGTACTTGAGAAGTGCCATCTCAACGAGATTTATGAGCTTAACGGTCTAAA 923
Query 989 TGATGAAGATGCTCTGAAGCTGTTTACGAGATGTGCCTTTGGGAATGGA-GTGATAGAGC 1047
|| |||||||||| |||||| || ||||| |||||||||||||| | | ||||||| |
Sbjct 924 TGGTGAAGATGCTAGGAAGCTATTCACGAGGTGTGCCTTTGGGAAAG-ATGTGATAGTGA 982
Query 1048 AGAATCTTC 1056
|||||||||
Sbjct 983 AGAATCTTC 991
> AT4G09430.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr4:5970932-5975375 FORWARD LENGTH=3120
Length=3120
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 893 GTTTGGTCCAGGGAGCTTGATCATCATAACT 923
|||||||||||||||||||||||||||||||
Sbjct 933 GTTTGGTCCAGGGAGCTTGATCATCATAACT 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89708373915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5