BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948510
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45220.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 821 0.0
AT5G45060.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 276 5e-73
> AT5G45220.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:18298926-18301069 REVERSE LENGTH=1641
Length=1641
Score = 821 bits (444), Expect = 0.0
Identities = 886/1088 (81%), Gaps = 75/1088 (7%)
Strand=Plus/Plus
Query 221 AATCGCTCTGGCTATCTTCTCTGAG-AATTACACCGAATCAGAATGGTGCTTGA-GAGAG 278
||||| ||||| ||||||| | || | ||||| |||||| |||||||||||| || ||
Sbjct 198 AATCGTTCTGGTTATCTTCAC-CAGCAGGTACACAGAATCAAAATGGTGCTTGATGA-AG 255
Query 279 CTAGCG-A-AGATCAAGGATTGTGTGGATCAAAAAAGA-CTCGTGGCTATTCCCATCTAC 335
|| | | | | ||||| | |||| ||| ||| | | || ||||||||||| |||| |
Sbjct 256 CT-G-GTAGACATCAATAAATGTGCGGA-GAAAGACCATCTGGTGGCTATTCCGATCTTC 312
Query 336 TACAAAG-TGGATCGATACTCCGTGAAATACTTGA-CGGAAAAGTTTGGTGATGCATTCA 393
||| ||| |||||| | | |||| | | | ||| ||| | |||| |||||||||||||
Sbjct 313 TAC-AAGTTGGATCCCTCCACCGTCAGAGGCCTGAGCGG-ACAGTTCGGTGATGCATTCA 370
Query 394 GGGAGCTG-G-CCAAGGA-T-GATCTGAGGAAGAAAGAGTGGAAACAAGCTCTGCAGTCA 449
|||| ||| | ||| | | ||| | | | |||| ||||||| ||||| || ||||
Sbjct 371 GGGATCTGAGAGAAAGTACTGGAT-TAATG--GAAA-AGTGGAAGGAAGCTTTGAAGTCG 426
Query 450 ATTGT-CAACAGAATCGGCT-TCATGGTGGACGAGAAAAGCAACGAGAACGAAATTCTCA 507
||| | | |||| | ||| | ||| | || | || ||| | | || | || | ||
Sbjct 427 ATT-TCCGACAG-ACCGGGTATCA--G-GG-TG-GATAAG-AGC-AG-CCCCAAGGC-CA 475
Query 508 ACGA-AATCGTCAA-GGCGGTTAAGTTTGTGCTGAACAGAATTCCATCGGAGGGAAGCCA 565
| || ||||| || | || ||| ||| ||| ||||||||||||||||||||||||
Sbjct 476 A-GAGAATCG-AAATAGTTGTGAAGAAGGTGTTGAGCAGAATTCCATCGGAGGGAAGCCA 533
Query 566 AAAGGCTTATGCGGATCCATCAGAAAATAACGACACTC-A--AACTTCCTCAGGAGGCGA 622
|| |||| || ||||||| |||||||| ||||||| | ||||||||| | |||||
Sbjct 534 TAACGCTTCTGTAGATCCATTAGAAAATAGTGACACTCGACTAACTTCCTC--G-GGCGA 590
Query 623 A-AAGGATAAGACTTTTGGAATCAAACAAAGACTGAGTGAATTGAAAGAGAAGTTGGAAC 681
| || ||| |||||||||||||||| ||||||||| ||||| ||||| |||||||| |
Sbjct 591 AGAA-AATAGGACTTTTGGAATCAAAGAAAGACTGAAAGAATTTAAAGACAAGTTGGATC 649
Query 682 TCAATAAACTTAGAAGTCAGCTAGGAATTATAATAGGTTGTCTTTTGCTTCTCTTTTTTG 741
|||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 650 TCAATAAAATGAGAAGTCAGCTAGGAATGGTAATAGGTTGTCTTTTGGTTCTCTTTTTTG 709
Query 742 TTCTGCAACAAATTGCTTATATGAGCACACGTTTAATTGGTGAGGGC---G---T---TG 792
||||| |||||| |||||||| ||||||||||||||| ||||||||| | | ||
Sbjct 710 TTCTGAAACAAAGTGCTTATACGAGCACACGTTTAATAGGTGAGGGCGGTGCCATCGGTG 769
Query 793 CCATC---G--A-C---AGAATTGCGGTGAATTTACAAAAAATGCCGGAGTACATTCCTG 843
||||| | | | |||||||||| ||| ||| |||||| | ||||||| ||||||
Sbjct 770 CCATCAGTGCCATCGATAGAATTGCGGACAATGTACCAAAAATACGGGAGTACGTTCCTG 829
Query 844 CAGATGGAACAGAGAATCCAAGAGACACATATACTGAAATTCGTACTGATAAATAT-GAA 902
||| ||||||||||| ||||||||||||||||||||| ||| ||||| ||||||| |||
Sbjct 830 AAGAGGGAACAGAGAAACCAAGAGACACATATACTGAATTTCATACTGGTAAATATGGAA 889
Query 903 GCAAAGCCTGAGAGATCTTCTTCTGCCGCTAGATTGAATGCCGATTTCCTTGACAGAACT 962
||||||| |||||||||||||||| || || | ||||||||| ||||||| ||||||
Sbjct 890 -CAAAGCCCGAGAGATCTTCTTCTGACGTTAAAACAAATGCCGATCTCCTTGATAGAACT 948
Query 963 TTCACCAACTCGCGAATGGACGGTAAATTCAAGCCACCG-AATATTCAAGTTTTCATCAA 1021
||||| || ||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 949 TTCACTGACACGCGAATGGACGGTAAAGTCAAGCCACCGAAAT-TTCAAGTTTTCATCAA 1007
Query 1022 TTTCCGCGGAGATCAGTTGCGCAACAATTTCGTCGGATATCTCAG--GCATGCACTTCGG 1079
|||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||
Sbjct 1008 TTTCCGCGGAGATCAGTTGCGCAACAATTTCGTCGGCTATCTC-GTTG-ATGCACTTCGA 1065
Query 1080 ATTAGTAAGATCAACGTGTTCATAGACAATGAGGAGCAAAGAGGTGAAGACCTCAACACT 1139
| ||| |||||||||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1066 AGAAGTGAGATCAACGTTTTCATAGATAATCAGGAGCAAAGAGGTGAAGACCTCAACACT 1125
Query 1140 CTTTTCAAGAGGATCGAAGAATCTCAG-ATTGCCATAGTTGTGTTTTCGAGTAGGTACAC 1198
|||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 1126 CTTTTCAAGAGGATCGAAGATTCT-GGTATTGCCATAGTTGTGTTTTCGAGTAGGTACAC 1184
Query 1199 AGAATCAAAATGGTGCTTGGATGAGCTTGTTAAGATTAAAGAACGTGTGGACCAAGGCCT 1258
||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||
Sbjct 1185 AGAATCAAAATGGTGCTTGGAAGAGCTTGTGAAGATTAAAGAACGTGTGCACCAAGGCCT 1244
Query 1259 TCTCAAGG 1266
||||||||
Sbjct 1245 TCTCAAGG 1252
Score = 200 bits (108), Expect = 3e-50
Identities = 124/132 (94%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 1263 AAGGGAGAGTTTGGTGACCATTTCAGAGATATAGAATACATGTACAAGTCTGACGAACCT 1322
||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| || |||
Sbjct 1300 AAGGGAGAGTTTGGTGACCATTTCAGAGATAAAGAGTACATGTACGAGTCTGATGAGCCT 1359
Query 1323 ATGATAAAGCAATGGAAAGAGGCGATCGTGTTTGTCTCCCATAAGTTTGCCCTGACTTTG 1382
|||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1360 ATGATAAAGCGATGGAAAGAGGCGATCGTGTTTATCTCCCATAGGTTTGCCCTGACTTTG 1419
Query 1383 GATGAAAAAAGT 1394
||||||||||||
Sbjct 1420 GATGAAAAAAGT 1431
Score = 180 bits (97), Expect = 4e-44
Identities = 105/109 (96%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1400 ATTGGAGATTGATTTCGTTGAAACTATCGTCAAGGAGGTCTTGAAAATGCTACAAGCCAT 1459
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1533 ATTGGAGATTGATTTTGTTGAAACTATCGTCAAGGAGGTCTTGAAAATTCTACAAGCCAT 1592
Query 1460 ATGCAAAGTGGAAAGTGGCCAATCCTCTTTTTGTGTGGAGAAAGCCTGA 1508
|||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1593 ATGCAAAGTGGAAAGTAGCCAATCCTCTTTTTGTGCGGAGAAAGCCTGA 1641
> AT5G45060.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:18182038-18186495 FORWARD LENGTH=3926
Length=3926
Score = 276 bits (149), Expect = 5e-73
Identities = 500/661 (76%), Gaps = 58/661 (9%)
Strand=Plus/Plus
Query 51 CCACCACAACATCAAGTGTTCATTC-ATTTCCGTGGCCG-GGATTTGCGTTA-T-GGATT 106
||||||||||||||||| |||| || |||||||||| | ||||| || | | |||||
Sbjct 31 CCACCACAACATCAAGTATTCA-TCAATTTCCGTGG-AGAAGATTTACG--ACTCGGATT 86
Query 107 CGTGAGCCATCTTG-AGAAGATCTT-GAAAGATC-ATAAAATTGAGGTCTTTGTCGACAG 163
||| |||||||| | ||||| | || |||| | | |||| || | ||||| ||||||
Sbjct 87 CGTAAGCCATCTAGTAGAAGCT-TTAGAAA-A-CGATAACATAAAAGTCTTCATCGACAA 143
Query 164 CGGTGAAGACAGAGGCGAACAC-CTAGAAA-ATCTATTGACGAGGATAGAGGAATCGC-G 220
| | ||||| |||||||| | |||||| | || || || | |||| | || || |
Sbjct 144 CTACGCAGACAAAGGCGAAC-CTTTAGAAACA-CTTTTAACCAAGATACATGACTC-CAA 200
Query 221 AATCGCTCTGGCTATCTTCTCTGAGAATTACACCGAATCAGA-ATGGTGCTTGAGAGAGC 279
||||||||| ||||||||||| | ||| ||||| |||||| | |||||||||||||||||
Sbjct 201 AATCGCTCTAGCTATCTTCTCCGGGAAGTACACTGAATCA-ACATGGTGCTTGAGAGAGC 259
Query 280 TAGCGAAGATCAAGGATTGTGTGGATCAAA--AAAGACTCGTGGCTATTCCCATCTACTA 337
|||||| ||| || ||||||||||| ||| || ||| || |||||||| |||| |||
Sbjct 260 TAGCGATGATAAAAGATTGTGTGGA-GAAAGGTAA-ACTTGTTGCTATTCCTATCTTCTA 317
Query 338 CAAAGTGGATCGATACTCCG-T-GAAATACTT-GACGGAAAAGTTTGGTGATGCATTCAG 394
||| || |||| || | | | | || | || || || |||| |||||||| || ||
Sbjct 318 CAAGGTAGATCCATCCACTGTTAGAGGT-GTTAGA-GG-GCAGTTCGGTGATGCTTTTAG 374
Query 395 GGAGC-TG-GCCAA-G-GA--TGATCTGAGGAAGAAAGAGTGGAAACAAGCTCTGCAGTC 448
|| | || | || | || |||| | | |||||||||||||||||||||| || |||
Sbjct 375 AGATCTTGAG-GAACGTGATGTGAT-T-AAGAAGAAAGAGTGGAAACAAGCTTTGAAGTG 431
Query 449 AATTGTC-AACAGAATCGGCT-TCA-TGGTGGACGAGAAAAGCAAC-GAGAACGAAATTC 504
||| | | ||| || | ||| | || |||| ||||| | |||| ||||| |
Sbjct 432 GATT-CCTGGCTTAATTGG-TATCACT-GTTCACGATAAAAG-TCCTGAGAGTGAAATAC 487
Query 505 TCAACGAAATCGTCAAGGCGGTTAAGTTTGTGCTGAACAGAA-TTCCATCGGAGGGAAGC 563
||||||||||||| |||| ||||||| ||| |||| | || || ||| ||||||||||
Sbjct 488 TCAACGAAATCGTTAAGGAGGTTAAGAAAGTGTTGAAGA-AAGTTTCATTGGAGGGAAGC 546
Query 564 CAAAA-G-GCT-TATGCGGATCCATCAGAAAATAACGACACTCAAACTTC-CTCAGGAGG 619
||||| | | | | || |||||||||| ||| || ||||||| || ||| | ||||||
Sbjct 547 CAAAAGGTGGTCTCTGTGGATCCATCACAAAGTATTGACACTCTAAGTTCGGT-AGGAGG 605
Query 620 CGAAAAGGATAAGACTTTTGGAATCAAACAAAGACTGA-GTGAATTGAAAGAGAAGTTGG 678
|||||||||||||||||||||||||||||| | ||| | || ||| ||||||||||||
Sbjct 606 TGAAAAGGATAAGACTTTTGGAATCAAACAACGGTTGAAG-GAGTTGGAAGAGAAGTTGG 664
Query 679 A 679
|
Sbjct 665 A 665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75401218590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5