BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948513
Length=2182
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17890.1 | Symbols: CHS3, DAR4 | DA1-related protein 4 | chr... 156 1e-36
AT5G45050.1 | Symbols: TTR1, ATWRKY16, WRKY16 | Disease resista... 113 6e-24
AT5G45260.1 | Symbols: RRS1, ATWRKY52, SLH1 | Disease resistanc... 99.0 2e-19
> AT5G17890.1 | Symbols: CHS3, DAR4 | DA1-related protein 4 | chr5:5916970-5923355
FORWARD LENGTH=5082
Length=5082
Score = 156 bits (84), Expect = 1e-36
Identities = 200/255 (78%), Gaps = 11/255 (4%)
Strand=Plus/Plus
Query 456 AGAGATGTTTATGAGAAGATCTT-TCC-AAAGGAACGAATAGGAATCTACTCAAGGATGC 513
||||||||||||| |||| | || ||| | |||||| | ||||| ||| | || ||
Sbjct 514 AGAGATGTTTATGGGAAGCT-TTATCCTGCA-GAACGAGTTGGAATTTACGC---GAGGC 568
Query 514 TGCCAGCTATAGAAAACTTGCTATGCAAGCAACCATGGGGA-GTTAAAAGCATAGGGATT 572
| | || |||||||| ||||| | ||||||| ||| |||| | ||||||||| |||
Sbjct 569 TACTAGAGATAGAAAAGTTGCTTTACAAGCAA-CATAGGGACATCCGAAGCATAGGAATT 627
Query 573 TGTGGTATGCCAGGCATAGGCAAGACGACGCTTGCTAAAGCAGTCTTTGACCAAATGTCT 632
|| |||||||| |||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 628 TGGGGTATGCCTGGCATAGGCAAGACGACGCTTGCTAAAGCAGTCTTTAATCACATGTCC 687
Query 633 GGTGGCTATGAAG-TCACTTGCTTCGTCGAAAATTTTCATGAAGCCTTTCACAAGAAGGG 691
|| ||||| | | |||||||| |||| || ||| ||||||| ||||| ||| ||||
Sbjct 688 ACTGATTATGATGCTT-CTTGCTTCATCGAGAACTTTGATGAAGCTTTTCATAAGGAGGG 746
Query 692 ACTTTACGGTTTGCT 706
||| || |||||||
Sbjct 747 ACTCCACCGTTTGCT 761
> AT5G45050.1 | Symbols: TTR1, ATWRKY16, WRKY16 | Disease resistance
protein (TIR-NBS-LRR class) | chr5:18176914-18181805 REVERSE
LENGTH=4221
Length=4221
Score = 113 bits (61), Expect = 6e-24
Identities = 207/274 (76%), Gaps = 24/274 (9%)
Strand=Plus/Plus
Query 456 AGAGATGTTTATGAGAAGATCTTTCCA-AAGGAACGAATAGGAATCTACTC-AAGGATGC 513
|||||||| ||||||||| ||||| | | ||||||||| ||||| || || || | |||
Sbjct 391 AGAGATGTGTATGAGAAGCTCTTT-TATATGGAACGAATTGGAATATATTCGAA-GCTGC 448
Query 514 TGCCAGCTAT-AGAAAACTTG-CTATGCAAGCAACC-ATGGGGAGTTAAAAGCATAGGGA 570
|| || | | |||||| || || ||||||||| ||| | | | | || |
Sbjct 449 TG-GAGAT-TGAGAAAA--TGATTA-ACAAGCAACCGTTGGACA-TCCGTTGTGTTGGAA 502
Query 571 TTTGTGGTATGCCAGGCATAGGCAAGACGACGCTTGCTAAAGCAGTCTTTGACCAAATGT 630
|||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 503 TTTGGGGTATGCCTGGCATAGGCAAGACTACACTTGCTAAAGCAGTCTTTGACCAAATGT 562
Query 631 CTGGTG-GCTATGAAG-TCACTTGCTTCGTCGAAAATTTTCATGAA-GCCT-TTCACA-A 685
|||||| | | ||| | ||| |||||| | ||| | | || || || | |||| | |
Sbjct 563 CTGGTGAGTT-TGATGCTCA-TTGCTTTATTGAAGACTA-CACCAAAGC-TATTCA-AGA 617
Query 686 GAAGGGACTTTACGGTTTGCTGCAGGAACA-TTT 718
|||||| |||| |||||||| ||||||| |||
Sbjct 618 GAAGGGTGTTTATTGTTTGCTGGAGGAACAGTTT 651
> AT5G45260.1 | Symbols: RRS1, ATWRKY52, SLH1 | Disease resistance
protein (TIR-NBS-LRR class) | chr5:18326203-18332609 FORWARD
LENGTH=4321
Length=4321
Score = 99.0 bits (53), Expect = 2e-19
Identities = 116/147 (79%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 570 ATTTGTGGTATGCCAGGCATAGGCAAGACGACGCTTGCTAAAGCAGTCTTTGACCAAATG 629
||||| |||||||| |||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 603 ATTTGGGGTATGCCTGGCATAGGAAAGACAACACTTGCTAAAGCAGTCTTTGACCAAATG 662
Query 630 TCTGGTGGCTATGAAG-TCACTTGCTTCGTCGAAAATTTTCATGAAGCCTTTCACAAGAA 688
||| | | || ||| | | |||| || ||||| | | | | || | |||| ||||
Sbjct 663 TCTAGCGCCTTTGATGCTT-CTTGTTTTATCGAAGACTATGACAAATCAATTCATGAGAA 721
Query 689 GGGACTTTACGGTTTGCTGCAGGAACA 715
||| ||||| |||||||| |||||||
Sbjct 722 GGGTCTTTATTGTTTGCTGGAGGAACA 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108232375020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5