BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948527
Length=2402
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45150.1 | Symbols: RTL3 | RNAse THREE-like protein 3 | chr5... 520 3e-146
> AT5G45150.1 | Symbols: RTL3 | RNAse THREE-like protein 3 | chr5:18260441-18264346
FORWARD LENGTH=2874
Length=2874
Score = 520 bits (281), Expect = 3e-146
Identities = 751/965 (78%), Gaps = 84/965 (9%)
Strand=Plus/Plus
Query 1132 AGATTTGCGCCAAGAATAAGTGGCCATTCCCGATTTACAGAATTGAGGAAGAAAGAGGGC 1191
|||||||| |||| |||||||||||| ||||||| ||| || ||||||||| ||| |
Sbjct 941 AGATTTGCACCAAAAATAAGTGGCCAAGGCCGATTTTCAGTGTTCAGGAAGAAAAAGGAC 1000
Query 1192 CAAAAAATGAGCAGAAATTTGTTTGTTCAGTTAAGATTGAGATACCAAATATAGAAGGTT 1251
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1001 CAAAAAATGAGCCCAAATTTGTTTGTTCAGTAAAGATTGAGATACCAAATATAGAAGGAA 1060
Query 1252 CCTTTCACATGAAGGGAGATGCAAAACCAAAGAAAAAGGAAGCAGAAAACTCCTCAGCCT 1311
|||||||||||||||||||| ||| ||||||||||| ||||||||||||||| |||||
Sbjct 1061 CCTTTCACATGAAGGGAGATATTAAATCAAAGAAAAAGCAAGCAGAAAACTCCTTAGCCT 1120
Query 1312 ACCACATGATAAGAGCCTTGGAATCTTCTCTAATGAGTCTTGTCAT---TAATCCGCAAA 1368
|||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||
Sbjct 1121 ACCACATGATAAGAGCCTTGGAATCTTCTCTAGTGAGTCTTGTCATAAGTAATTTACAAA 1180
Query 1369 TGCCGAAA-GTTTTAGATGAGAAGAAGAATCCATCT-CTCGTCAGCTCAGAAATGGATTC 1426
||||||| |||| |||||||||||| ||||||| | ||| |||||||||| ||||||||
Sbjct 1181 AGCCGAAAAGTTT-AGATGAGAAGAATAATCCAT-TGCTCTTCAGCTCAGAGATGGATTC 1238
Query 1427 TGATTCAGTGAAAGCAGTGGAGAAGATCTTGAATTAC-GTTTTCACAAACAAGAATCTTC 1485
| | ||||| |||||||||||||||||||||||||| |||| | ||||||| |||||
Sbjct 1239 T--T-CAGTGGAAGCAGTGGAGAAGATCTTGAATTACAGTTT-CGTGAACAAGACTCTTC 1294
Query 1486 TGAAAGAAGC-GCT-A-AGGCAA-ACCTCTTCTCTATTCCAGAAGCTTAGGTTCGTTGGC 1541
|||||||| | ||| | | ||| | || || |||||||| ||||| |||||||||
Sbjct 1295 TGAAAGAA-CTGCTTACACACAATAATTCACCTTTATTCCAGGGGCTTATGTTCGTTGGT 1353
Query 1542 CGGG-CAGCTCTAGT-TCTCGCCATCACGAATCACATCTACCTCAGGTATCCTAATT-TC 1598
| | | ||||| | ||||||| | ||||| ||| | ||||||| || |||| | ||
Sbjct 1354 -GAGTCGGCTCTT-TCTCTCGCCTTTACGAAACACTTATACCTCACTTACCCTA-TGCTC 1410
Query 1599 GAACCCAGGGAGTTGGAACTGCTGCAACG-TG-GAAATACATGT-A--ACAAATCTTTGG 1653
||||||| ||| ||| || ||| | | || ||| ||||||| | |||||| | |
Sbjct 1411 GAACCCAAGGATTTGTCTGTGTTGCGA-GATGCGAA-TACATGTCATGACAAATAT--G- 1465
Query 1654 CTCGCGTTGCCGTGAAACATAAT--ATTCACCAATTCTTTATAGGCCAAT-TC--AA-GT 1707
|| | || ||||| ||| | || ||| |||||| |||||||||| | | || || |
Sbjct 1466 CTTGTGTCGCCGTCAAA-A-AAGGCATTTACCAATCCTTTATAGGC-AGTGTCCCAAAGC 1522
Query 1708 CGGAGAAAAA-GATTGA-AGCGTTC-TCAGAGGTGGTGGGCAAAGAGGATGACCCAGTTC 1764
| || ||||| || | | || ||| | |||| || |||||||||| ||||| ||| | |
Sbjct 1523 CAGA-AAAAATGACT-ACAGATTTCAT-AGAGTTGATGGGCAAAGAAGATGATCCA-TAC 1578
Query 1765 CTTCAGATGGCCGATCGGAGAGAGCCAC-AAA-TGTACTC-TCTGACCTTTTAGA-GTCT 1820
||| | | | | | | |||| | ||| | | ||| | | | ||| ||| | |
Sbjct 1579 ----AGA-GTT-G-T-G-A-A-AGCCCCCAAAAT-T-CTCGT-TAATCTTCTAGCTGG-T 1623
Query 1821 GTAGCTGGAGCTGTTTATATTGATATGAATTTTGATGTTAAAA-GACTGTGGGAGAGCTT 1879
|||||||||||||||||||||||| |||| | | | || | || |||| | ||||| |||
Sbjct 1624 GTAGCTGGAGCTGTTTATATTGATGTGAAATATAACGT-ACAACGACTCTTGGAGATCTT 1682
Query 1880 CAGGGGTCTTTTCGAGCCATTATATACATTGGATGATTTGCGGCTGCGACCT---CAACC 1936
||||| |||||| |||||| |||||||| |||||||||| ||| ||| || | |||||
Sbjct 1683 CAGGGTTCTTTTGGAGCCAATATATACACTGGATGATTTACGGATGCAACTTAAACAACC 1742
Query 1937 AATTCGTACCCTTTCTT-GTTTGGGTGATAAAGACGGCAAGCGTTTCGACTTCAGGTATG 1995
| ||| || |||| || |||||| ||||||| ||||||||| ||||||||||||||
Sbjct 1743 ATTTCTTATGCTTT-TTCGTTTGGCTGATAAACACGGCAAGCAAATCGACTTCAGGTATT 1801
Query 1996 AGGAAA-A-GG-G-CAGCA-ATAGGTATAAAGCTC-GCGTATATCTTGATGATAAGTTAA 2049
| ||| | || | ||||| | | ||| |||| | |||||| | ||||||| ||| |
Sbjct 1802 CG-AAAGATGGTGGCAGCAGAAAAA-ATATTGCTCAG-GTATATATGGATGATATGTTTA 1858
Query 2050 TAGCT 2054
|||||
Sbjct 1859 TAGCT 1863
Score = 351 bits (190), Expect = 1e-95
Identities = 258/289 (89%), Gaps = 11/289 (4%)
Strand=Plus/Plus
Query 1115 GAAAGGGAAGTTACAT-AAGATTTGCGCCAAGAATAAGTGGCC-ATTCCCGATTTACAGA 1172
|||||||||||| | || ||||||||||||||||||||||| | |||||||| |||
Sbjct 2514 GAAAGGGAAGTTGTTTGAA-ATTTGCGCCAAGAATAAGTGGCCGA-ACCCGATTTTCAGT 2571
Query 1173 ATTGAGGAAGAAAGAGGGCCAA-AAAATGAGCAGAAATTTGTTTGTTCAGTTAAGATTGA 1231
||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||
Sbjct 2572 GTTGAGGAAGAAAGAGGG-CAACAAAACGAGCAGAAAATTGTTTGTTCAGTTAAGATTGA 2630
Query 1232 GATACCAAATATAGAAGGTTCCTTTCACATGAAGGGAGATGCAAAACCAAAGAAAAAGGA 1291
||||||||||||||||||| |||||||||| || |||||||||||||||| |||||||||
Sbjct 2631 GATACCAAATATAGAAGGTACCTTTCACATAAAAGGAGATGCAAAACCAACGAAAAAGGA 2690
Query 1292 AGCAGAAAACTCCTCAGCCTACCACATGATAAGAGCCTTGGAATCTTCTCTAATGAGTCT 1351
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 2691 AGCAGAAAACTCCTCAGCCGACCACATGATAAGAGCCTTGGAATCTTCTGTAATGAGTCT 2750
Query 1352 TGTCATTA--A-TCCGCAAATGCC-GAAAGTTTTAGATGAGAAGAAGAA 1396
|||||| | | || |||||||| |||| ||| ||||| |||||||||
Sbjct 2751 TGTCATAACGAATCTGCAAATGCATGAAAATTT-AGATGGGAAGAAGAA 2798
Score = 322 bits (174), Expect = 1e-86
Identities = 362/450 (80%), Gaps = 24/450 (5%)
Strand=Plus/Plus
Query 546 TTGCAGATCTTCAGGGGTCTTTTGGAGCCAATATATACACTTGATGATTTACGGATGCAA 605
||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1672 TTGGAGATCTTCAGGGTTCTTTTGGAGCCAATATATACACTGGATGATTTACGGATGCAA 1731
Query 606 CCTAAACCACCATTTCTTACGCTTTTTCGTTTGGCTGATAAACACGGCAAGCGAATTGAC 665
| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 1732 CTTAAACAACCATTTCTTATGCTTTTTCGTTTGGCTGATAAACACGGCAAGCAAATCGAC 1791
Query 666 TTCAGGTATTCGAAAGATGATCACAGTA-AAGAAAATATTGCTGAGGTTTATCTTGATGG 724
||||||||||||||||||| | ||| | || ||||||||||| |||| ||| | ||||
Sbjct 1792 TTCAGGTATTCGAAAGATGGTGGCAGCAGAA-AAAATATTGCTCAGGTATATATGGATGA 1850
Query 725 TATATTTATTGCCTCCGGGTGTACTAAAAGTTTA-AGTGTCGCAAAGGTGCTTGCTGCTG 783
||| ||||| || ||||| ||| ||||| || || | | ||||||| ||||||||||||
Sbjct 1851 TATGTTTATAGCTTCCGGTTGTGCTAAACGTATAGA-TACCGCAAAGTTGCTTGCTGCTG 1909
Query 784 AGGAAGCGGTACAGAAGCTGTCAGAATATGATGTTGAAATTGAAAATGTGAAACGGAAGT 843
|||||||| |||||||||| ||||||| | ||| | | ||||| | | | |
Sbjct 1910 AGGAAGCGATACAGAAGCTCTCAGAATGT-ATGCCCA--TCGAAAA-G--ATT---A--T 1958
Query 844 TGATTGAGATT-TGCTCCACTGAAAAACTCCGGTTACCGATTG-AGTCATTTTCTTTGCC 901
| || |||| | || || | | | || | || || | |||| ||||||||
Sbjct 1959 TCATCAAGATAAT-CTAGACGGTGAGG-TAA--TT-CAGACTGGA-TCATCTTCTTTGCT 2012
Query 902 TACTGCCTCTGAGAACCCTGTAACCGATGAAATGACGCAAGAACAAATGGTTATTGATGA 961
|||||||| |||||||||| ||||||| |||||||| ||||||||||||||||| |||||
Sbjct 2013 TACTGCCTTTGAGAACCCTTTAACCGAAGAAATGACACAAGAACAAATGGTTATCGATGA 2072
Query 962 GGATTGTCCACATGTTGAACTTGAAGATGT 991
|||| ||| | |||| ||| | |||| |||
Sbjct 2073 GGATAGTCTAGATGTGGAA-TGGAAGTTGT 2101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119276494920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5