BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948532
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45113.1 | Symbols: | mitochondrial transcription terminati... 1829 0.0
AT4G19650.1 | Symbols: | Mitochondrial transcription terminati... 734 0.0
> AT5G45113.1 | Symbols: | mitochondrial transcription termination
factor-related / mTERF-related | chr5:18232277-18233521
REVERSE LENGTH=1245
Length=1245
Score = 1829 bits (990), Expect = 0.0
Identities = 1163/1248 (93%), Gaps = 6/1248 (0%)
Strand=Plus/Plus
Query 168 ATGTTTGAGAACTTTCATGTTCTTTGCTATTATGGGATTCCGCGTGGCAAGATTGGCCGC 227
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||
Sbjct 1 ATGTTTGAGAACTTTCATGTTCTTTGCTATTATGGGATTCCCCGTGACAAGATTGGTCGT 60
Query 228 ATGTTTAAAGAAGCAAGAGAGATTTTTGGATACGAGAATGGGGTTTTGGCGTCGAAACTT 287
||| ||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 61 TTGTATAAGGAAGCAAGAGAGATTTTTGTATACGAGAATGGGGTTTTGGCATCGAAACTT 120
Query 288 GAAGCTTATGAGAGCTTGGTTCTTAGTAAGCCTATAGTCATTAAGCTTGTTACTTGTTGC 347
||| ||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 121 GAACCTTATGAGATCTTGGTTCTTAGAAAGGCTATAGTCATTAAGCTTGTTACTTGTTGC 180
Query 348 CCATTGCTTCTGGTTGGTGGCATTGATAGTGAGTTTGTTTCTGTGGTCAATAAGTTGAAG 407
|| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 181 CCGTTGCTTCTGGTTGGTGGCATTGATTGTGAGTTTGTTTCTGTGGTAAATAAGTTGAAG 240
Query 408 GGAGTAAACATAGGATGTGATTGGCTTGCGCGGTATTTGTCGGATAGAAAAACATATAAC 467
||| ||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||
Sbjct 241 GGATTAAACTTAGGATGCGATTGGCTTGCGCGGTATTTGTCAGTTAGAAAAACATATAAC 300
Query 468 TGGCTTCGGATTCTTGAGACAATGGAGCTCCTTGATAAGGTGGGGTTTAAGGATG-AGAG 526
|||| ||||||||||||||||||||||||||||| |||||||||||||| || | |||
Sbjct 301 TGGCGCCGGATTCTTGAGACAATGGAGCTCCTTGAGAAGGTGGGGTTTAAAGA-GAAGAA 359
Query 527 GTTGAGTAGTCTTTTGAAAGCATATCCAGATTTGGTGGGTGAGGCTTCTGGAAATAAAGC 586
|||||||| |||||| ||||| |||||||||||||| ||||| ||||||| ||||||||
Sbjct 360 GTTGAGTAATCTTTTAAAAGCGTATCCAGATTTGGTAGGTGAAACTTCTGGCAATAAAGC 419
Query 587 TTATATTATGTTTGAAAAGTTTCATAAAGTTGGACTTCAGATGAATGAAATCGATGATTT 646
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 420 TTATATTATGTTTGAAAAGTTTCATAAAGTTGGACTTCAGATGAATGAAATTGATAAATT 479
Query 647 AGTGACAGACAAC-CCAGAGATGCTATTAGAGAAATCTGTAAAAAGAATTTTAGAGACGT 705
| ||| ||||||| || |||||| |||||||||||||||||||||||||||||||| |||
Sbjct 480 ACTGATAGACAACTCC-GAGATGTTATTAGAGAAATCTGTAAAAAGAATTTTAGAGGCGT 538
Query 706 TGAAATTCTTGAAACGTATCAGAATGGAAAAGCAGTTTGTCGTAAGGTTTTTACTGTGTC 765
|||||||||||||| |||||||||| ||||||||||||||||| |||||||||| |||||
Sbjct 539 TGAAATTCTTGAAATGTATCAGAATAGAAAAGCAGTTTGTCGTTAGGTTTTTACAGTGTC 598
Query 766 ACATGAAACTTATCTGTTCATCCTCTCTGCTAGGACCTAGAGCTGTTTGGAATAGATTGA 825
||||||| | |||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 599 ACATGAAGCATATCTGTTCATCCTCTTTGCTAGTACCTAGAGCTGTTTGGAATAGATTGA 658
Query 826 AAATCGGAAGAGACCAGTTATGTCAGATCATTAAGGAAGAGCCTTTGAGATTGTTCAGTT 885
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AAATCAGAAGAGATGAGTTATGTCAGATCATTAAGGAAGAGCCTTTGAGATTGTTCAGTA 718
Query 886 TAGCTTCTAAAACTAATAATA-GTAGAATTAAACTTGATTCACTGGATTTGAGGAATGCA 944
||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct 719 TAGCTTCTAAAACTAATAA-AGGTAGAATTGAACTTGATTCACTGGATTCGAGGAATGCA 777
Query 945 GAGAAGACGGCATTCTTGTTGAAGCTAGGGTATGTAGAGAATTCCGATGAGATGGTGAGA 1004
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 778 GAGAAGACGACATTCTTGTTGAAGTTAGGGTATGTAGAGAATTCCGATGAGATGGTGAGG 837
Query 1005 GCTCTGAAAAAGTTTCAAGGGAGGGGAGATGAGCTACAGGAGAGATTTGATTGCTTTGTG 1064
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GCTCTGAAAAAGTTCCAAGGGAGGGGAGATGAGCTACAGGAGAGATTTGATTGCTTTGTG 897
Query 1065 AAGGCTGGTTTGGACTATAATGTGGTTAGCCAGCTTGTTAAGCGGGCGCCTCATATGCTT 1124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 898 AAGGCTGGTTTGGACTATAATGTGGTTAGCCAGCTTGTTAAGCGGGCGCCTCATATACTT 957
Query 1125 AACCGGCCGAAAGGTATCATAGAAAAGAAGATCAATATGCTAACAGATTATTTGGGTTAT 1184
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 958 AACCGGCCGAAAGATATCATAGAAAAGAAGATCATTATGCTAATAGATTATTTGGTTTAT 1017
Query 1185 CCAATTGAATCCGTGATAGAGTCCCCAACATATTTGTGTTATAGTATGGAGAGAATACAT 1244
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1018 CCAATAGAATCCGTGATAGAGTCCCCAACATATTTGTGTTATAGTATGAAGAGAATACAT 1077
Query 1245 CACAGATTCTCAATGTACATTTGGTTGAAAGAAAGAGATGCAGCAATGCCGAGGCTGACA 1304
|| |||||| |||||||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct 1078 CAGAGATTCACAATGTACATTTGGTTGAGGGAAAGAGATGCAGTAATACCGAGGCTGACA 1137
Query 1305 CTAGGCACTATAGTCGGTATTTCCAATACACTTTTTGTGTCATACTTTGTCAATACCCAC 1364
||||||||| | ||||||||||| ||||| ||| ||||| ||||||||||||||||||||
Sbjct 1138 CTAGGCACTGTTGTCGGTATTTCTAATACCCTTATTGTGCCATACTTTGTCAATACCCAC 1197
Query 1365 CCTGAAGGTCGAGCTACTTGGGAAAATATAAAGAAAGCATCTACCTGA 1412
|| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1198 CCGGAAGGTCCAGCTACTTGGGAAAATATAAAGAAAGCATCTACCTGA 1245
> AT4G19650.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr4:10691674-10695701 FORWARD
LENGTH=2263
Length=2263
Score = 734 bits (397), Expect = 0.0
Identities = 1061/1370 (77%), Gaps = 91/1370 (7%)
Strand=Plus/Plus
Query 93 AGTTTGGGTTTGCGTCCATCTGAGATT-CCGCGTTTCCTTCAACGGGA-CTTGGT-TCTT 149
|||||||||||| |||| | |||| || ||||| |||| |||| | | | | | ||
Sbjct 406 AGTTTGGGTTTGTGTCCTTATGAGTTTGAAACGTTT-CTTCCACGGAAGC-TAATGT-TT 462
Query 150 TTGAGTGATGATGGTATCATGTTTGAGAACTTTCATGTTCTTTGCTATTATGGGATTCCG 209
||||||||||||||||||||||||||||||||||||| ||||||| | |||||||| |||
Sbjct 463 TTGAGTGATGATGGTATCATGTTTGAGAACTTTCATGCTCTTTGCAACTATGGGATCCCG 522
Query 210 CGTGGCAAGATTGGCCGCATGTTTAAAGAAGCAAGAGAGATTTTTGGATACGAGAA-TGG 268
||||| ||||||||||| |||| ||||||||| |||||||||||| |||| || | |||
Sbjct 523 CGTGGTAAGATTGGCCGTATGTATAAAGAAGCGAGAGAGATTTTTAGATATGA-ATCTGG 581
Query 269 GGTTTTGGCG-TCGAAACTT-GAAGCTTATGAGAGCTTGGTTCTTAGTAAGCCTATAGTC 326
| | |||||| | ||| || | | |||||||| |||| |||||||||| ||| |||
Sbjct 582 GATGTTGGCGAT-GAAGCTAAGGGG-TTATGAGAATTTGGGTCTTAGTAAGGCTACAGTT 639
Query 327 ATTAAGCTT-GTTACTTGTTGCCCATTGCTTCTGGTTGGTGGCATTGATAG-TGAGTTTG 384
|||||| || |||||| ||||||| ||||| ||||||||||| |||||| | |||||||
Sbjct 640 ATTAAG-TTAGTTACTAGTTGCCCTTTGCTACTGGTTGGTGGGATTGAT-GCTGAGTTT- 696
Query 385 T-TTCTGTGGTCAATAAGTTGAAGGGAGT-A-AACATAGGATGTGATTGGCTTGCGCGGT 441
| |||||| || |||||||||| || || | || |||||||||||||||||| |||||
Sbjct 697 TCTTCTGTAGTTGATAAGTTGAAAGG-GTTACAAG-TAGGATGTGATTGGCTTGGGCGGT 754
Query 442 ATTTGTCGGATAGAAAAACATATAACTGGCTTCGGA-TTCTTGAGACAATGGAGCTCCTT 500
| ||||| || | |||||||||| ||||| | || |||| |||||||| ||| | |||
Sbjct 755 ACTTGTCTGACCGGAAAACATATAGCTGGCG-CAGAATTCTGGAGACAATAGAGTTTCTT 813
Query 501 GATAAGGTGGGGTTTAAGGATGAGAGGTTGAGTAGTCTTTTGAAAGCATATCCAGATTTG 560
||||| ||||| | ||| || |||| ||||||||||||||||||| | ||||||| ||||
Sbjct 814 GATAAAGTGGGATGTAAAGAGGAGAAGTTGAGTAGTCTTTTGAAAACGTATCCAGCTTTG 873
Query 561 GTGGGT-GA-GGCTTCTGGAAATAAAG-CTTATATTATGTTTGAAAAGTT-TCATAAAGT 616
|| | || |||| | ||||| ||| || || || |||||| | ||| | |||||
Sbjct 874 GTAA-TCGAAGGCTCC-GGAAAGAAATTCT-ATGTTCTGTTTGGTAGGTTGTT-TAAAGC 929
Query 617 TGGACTTCA-GATGAATGAAATCGAT-GATTTAGTGACAGACAACCCAGAGATGCTATTA 674
|| ||||| | ||||||| || || | | | | | |||||| ||||||||| | | |
Sbjct 930 GGGGCTTCAAG-TGAATGAGATTTATAGGCT-ATTTATAGACAATCCAGAGATGTTGTCA 987
Query 675 GAGAAAT-C-TGTAAAAAGAATTTTAGA-GACGTTGAAATTCTTGAAA-CGTATCAGAAT 730
|| |||| | || ||||| | || ||| ||||||| | ||||||| | ||| |||||
Sbjct 988 GACAAATGCGTG-AAAAATA-TTC-AGAAGACGTTGGATTTCTTGATTGC-TATTAGAAT 1043
Query 731 GGAAAAGCAGTTTGTC--GTAAGGTTTTTACTGTGTCACATGAAACTTATCTG-TTCATC 787
||||| ||||||| || | ||| |||| ||| |||| ||| | ||||| || |||||
Sbjct 1044 GGAAACGCAGTTTATCACG-AAGATTTTG-CTGAGTCATATGGAGCTTAT-TGGTTCATG 1100
Query 788 CTCTCTGCTAGGACCTAGAGCTGTTTGGAATAGATTGAAAATCGGAAGA-GACCAGTTAT 846
|||||||| || ||||||| ||| ||| ||| ||||| | || | ||| || |||
Sbjct 1101 CTCTCTGCCAGCACCTAGAACTGCTTGTCTTAGTTTGAATGTTA-AACAAGACGAGCTAT 1159
Query 847 GTCAGATCATTAAGGAA-GAGCCTTTGAGATTGTTCAGTTTAGCTTCTAAAACTAATAAT 905
|| ||||| |||| ||| ||||||||||||||||| |||| | ||||| ||| || ||
Sbjct 1160 GTAAGATC-TTAAAGAAAGAGCCTTTGAGATTGTTTTGTTTTGTTTCTACAACGAAGAAG 1218
Query 906 AGTAGAATTAAACTTGATTCACTGGATTTGAGGAA-TGC--AGAGAAGACGGCA-TTCTT 961
|| | || |||| | ||| || | |||||| | | ||||||||| | | || ||
Sbjct 1219 AGAAAAAGCAAACCTCTTTCGGAAGACTCGAGGAAATACTTAGAGAAGACAG-AGTTTTT 1277
Query 962 GTTGAAGCTAGGGTATGTAGAGAATTCCGATGAGATGGTGAGAG-CTCTGAAAA-AGTTT 1019
||||| ||||||||||||||| || || ||||||||||||| || |||| |||| |||||
Sbjct 1278 GTTGAGGCTAGGGTATGTAGAAAACTCGGATGAGATGGTGA-AGGCTCT-AAAACAGTTT 1335
Query 1020 CAAGGGAGGGGAGATGAGCTACAGGAGAGATTTGATTGCTTTGTGAAGGCTGGTTTGGAC 1079
| ||||||||||||| ||||||||||||||||||||||| ||||||| || ||||| ||
Sbjct 1336 CGAGGGAGGGGAGATCAGCTACAGGAGAGATTTGATTGCCTTGTGAAAGCCGGTTTAAAC 1395
Query 1080 TATAATGTGGTTAGCC-AGCTTGTTAAGCGGGCGCCTCAT-ATGCTTAACCGGCCGAAAG 1137
||||||||||||| | || | | | || || || || || ||||||| | | ||||
Sbjct 1396 TATAATGTGGTTA-CTGAGATCATCAGGCATGCTCCG-ATGATACTTAACCTGTCTAAAG 1453
Query 1138 GTATCATAGA-AAAGAAGAT-CAATATGCT-AACAGA--TTATTTGGGTTATCCAATTGA 1192
| ||||||| ||| ||||| || | | || ||| || || || || | ||||||||||
Sbjct 1454 ATGTCATAGAGAAA-AAGATACA-T-TCCTTAACCGAACTTCTT-GGCT-ATCCAATTGA 1508
Query 1193 ATCCGTGATAGAG-TCCCCAACATATTTGTGTTAT-AGTATGGAGAGAATACATCACAGA 1250
||| || || || | ||| ||||| |||||||| | |||| |||| ||||||||||||
Sbjct 1509 ATCATTGGTA-AGGTTCCCGGCATATCTGTGTTATGA-TATGCAGAGGATACATCACAGA 1566
Query 1251 TTCTCAATGTACATT-TGGTTGAAAGAAAGAGATGCAGCAATGCCGAGGCTGACACTAGG 1309
||||||||||| || ||||||| |||||||||||||||| ||| | |||| ||| | |
Sbjct 1567 TTCTCAATGTAT-TTATGGTTGAGGGAAAGAGATGCAGCAAAGCCAATGCTGTCACCAAG 1625
Query 1310 CACTATAGTCGGTATTTCCAAT-A--CACTTTTTGTGTCA-TACTTTGTCAATACCCACC 1365
|||||| || | || | | | | | |||||| | || ||||||||| |||||
Sbjct 1626 CACTATTCTC---ACTTGCGGTGATGCCCGGTTTGTGA-AGTATTTTGTCAATGTCCACC 1681
Query 1366 CTGAAGGTCGAGCTACTTGGGAAAATATAAAGAAAGCATCTACCTGAAGT 1415
||||||||| ||| | |||||||| |||||| || ||||||||||||||
Sbjct 1682 CTGAAGGTCCAGCCATTTGGGAAAGTATAAACCAATCATCTACCTGAAGT 1731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581966270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5