BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948543
Length=1778
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45030.1 | Symbols: | Trypsin family protein | chr5:1817247... 2340 0.0
AT2G35155.1 | Symbols: | Trypsin family protein | chr2:1481899... 608 5e-173
> AT5G45030.1 | Symbols: | Trypsin family protein | chr5:18172471-18176207
FORWARD LENGTH=2816
Length=2816
Score = 2340 bits (1267), Expect = 0.0
Identities = 1396/1460 (96%), Gaps = 2/1460 (0%)
Strand=Plus/Plus
Query 320 TGTTTTGACAAATATAGCGGCTATTCTTGTTTTTGTTGCTCGGAAAGTTCACAAGCAATG 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGTTTTGACAAATATAGCGGCTATTCTTGTTTTTGTTGCTCGGAAAGTTCACAAGCAATG 598
Query 380 GCTTAATCCTCCTCAGTGTTTACCTACAGCCTTGGAGGGTCCTGGAGGAGTTTGGTGTGA 439
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GCTTAATCCTCTTCAGTGTTTACCTACAGCCTTGGAGGGTCCTGGAGGAGTTTGGTGTGA 658
Query 440 TGTAGATGTTGTTGAGTTTCAATATTATGGTGCACCTGCGCAAACGCCCAAAGAGCAGGT 499
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 659 TGTAGATGTTGTTGAGTTTCAATATTATGGTGCACCTGCGCAAACACCTAAAGAGCAGGT 718
Query 500 GTATACAGAGCTTGTTGATGATCTGAGAGGCAGTGGTTCGTCCATCGGATCTGGTTCACA 559
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 719 GTATACAGAGCTTGTTGATGATCTGAGAGGCAGTGGTTCGTCCATAGGATCTGGTTCACA 778
Query 560 GGTGGCTAGCCAAGAGACATATGGAACCTTGGGAGCTATTGTAAAGAGTAAAACCGGAAT 619
|||||||||||||||||||||||||||||| || || ||||||||||||||||| || ||
Sbjct 779 GGTGGCTAGCCAAGAGACATATGGAACCTTAGGTGCAATTGTAAAGAGTAAAACTGGTAT 838
Query 620 CAGACAAGTTGGCTTCCTTACAAACCGTCATGTTGCAGTTGATTTAGACTACCCAAGCCA 679
|||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 839 CAGACAGGTTGGTTTCCTAACAAACCGGCATGTTGCAGTTGATTTAGACTACCCAAGCCA 898
Query 680 GAAGATGTTTCATCCTTTGCCACCTAGCCTCGGACCCGGAGTCTACTTAGGTGCAGTGGA 739
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GAAGATGTTTCATCCATTGCCACCTAGCCTCGGACCCGGAGTCTACTTAGGTGCAGTGGA 958
Query 740 AAGAGCAACTTCATTCATTACCGATGACCTTTGGTATGGCATTTTCGCTGGAACTAACCC 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAGAGCAACTTCATTCATTACCGATGACCTTTGGTATGGCATTTTCGCTGGAACTAACCC 1018
Query 800 AGAAACATTTGTTCGAGCTGATGGAGCCTTCATACCATTTGCGGAGGACTTCAACATGAA 859
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | |||
Sbjct 1019 AGAAACATTTGTTCGAGCTGATGGAGCCTTCATTCCATTTGCCGAGGACTTCAATACGAA 1078
Query 860 TAATGTAACCACAACTGTCAAAGGTATTGGTGAGATCGGTAATATCCATGCTACTGATCT 919
||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||
Sbjct 1079 CAATGTAACCACAACTGTCAAAGGGATTGGTGAGATTGGTGATATCCATGCTACTGATCT 1138
Query 920 ACAGTCACCAATCAACAGTCTAATAGGAAGGAAAGTTGTCAAAGTTGGAAGAAGCTCTGG 979
|||||| ||| | ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1139 ACAGTCTCCAGTTAACAGTCTAATAGGAAGAAAAGTTGTCAAAGTTGGAAGAAGCTCGGG 1198
Query 980 TTTGACCACTGGGACCATAATGGCATATGCGTTGGAATACAATGACGAGAAAGGGATTTG 1039
|||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 1199 TTTGACCACTGGGACCATAATGGCTTACGCGTTGGAATACAATGACGAGAAAGGAATTTG 1258
Query 1040 TTTCCTAACTGATTTTCTTGTTGTTGGTGAAAACCAGCAGACTTTTGATCTTGAGGGTGA 1099
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTTCCTAACCGATTTTCTTGTTGTTGGTGAAAACCAGCAGACTTTTGATCTTGAGGGTGA 1318
Query 1100 CAGTGGAAGCCTTATTCTGTTGGCTGCGGGCGATGAGAAGAATGAGAAACCGCGACCTGT 1159
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1319 TAGTGGAAGCCTTATTCTGTTGGCTGCGGGCGATGAGAAGAACGAGAAACCGCGACCTGT 1378
Query 1160 TGGAATTATTTGGGGAGGAACAGCAAACAGGGGACGGTTGAAGCTAAAAGTGGGGGAACA 1219
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TGGAATCATATGGGGAGGAACAGCAAACAGGGGACGGTTGAAGCTAAAAGTGGGGGAACA 1438
Query 1220 ACCTGAGAATTGGACAAGTGGAGTTGATCTTGGAAGAGTTCTTAATCTTCTTGAGCTTGA 1279
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1439 ACCTGAGAATTGGACAAGTGGAGTTGATCTTGGCAGAGTTCTTAATCTTCTTGAGCTTGA 1498
Query 1280 TCTCATTACTTCCAATGAGGGTCTTCAAGCGGCGGTGCTGGAACAGAGAAACAGTATTAT 1339
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1499 TCTCATTACTTCCAATGAGGGTCTTCAAGCTGCGGTGCTGGAACAGAGAAACGGTATTAT 1558
Query 1340 GTGTGCTG-GAATTGATTCCACCGTTGTGGAATCATCTCCTGGTGTGTGCAATATTTCGA 1398
|||||||| | ||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1559 GTGTGCTGCGG-TTGATTCCACCGTCGTGGAATCATCTCCTGGTGTGTGCAATATTTCCA 1617
Query 1399 GGTGTAAAACGGGTGAGAACTTTGAGCCTATTAACTTGAATGTCCAGCAAGTTCTTAGAG 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1618 GGTGTAAAACGGGTGAGAACTTTGAGCCTATTAACTTGAATGTCCAGCAAGTTCTTATAG 1677
Query 1459 AAGAAGACAGCTCAAACATTCATCCAGAGTTCCAAATAGAAGATGTGTTAGAATCAGCAG 1518
|||| |||| |||||||||||| |||||||||||||||||||| ||||||||||||| |
Sbjct 1678 AAGACGACAACTCAAACATTCACCCAGAGTTCCAAATAGAAGACGTGTTAGAATCAGTGG 1737
Query 1519 CTATGATCGAAGAACACCAGTTCATTCCAAGTTCAAGTAACAACGGATACTCACTCCATC 1578
|| |||||||||||||||||||||||||||||||||| |||||||||| | |||| ||||
Sbjct 1738 CTGTGATCGAAGAACACCAGTTCATTCCAAGTTCAAGCAACAACGGATCCGCACTTCATC 1797
Query 1579 AGAAAATTAATGGACCAGAGAATCTCGAATCCAAGAACCTGTCTTCTCTTAAGACTAATA 1638
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1798 AGAAACCTAATGGACCAGAGAATCTCGAATCCAAGAACCTGTCTTCGCTTAAGACTAGTA 1857
Query 1639 GCTCGGGTGATGAGATTGGCTTTTCTTTGCAGTTAGGTGAGTCAGATACAAAGAAAAGAA 1698
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GCTCAGGTGATGAGATAGGCTTTTCTTTGCAGTTAGGTGAGTCAGATACAAAGAAAAGAA 1917
Query 1699 AGCGAACTGATTCACCAGATGGTTCTCAAGAACATGAAGAGTCAAGGTTATGCTCATGAG 1758
|||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||
Sbjct 1918 AGCGAACTGATTCACCAGATGGTTCTCAAGAAGATGAAGAGTGAGGGTTATGCTCATGAG 1977
Query 1759 ACTTCATAACATACCAGAGG 1778
||||||||||||||||||||
Sbjct 1978 ACTTCATAACATACCAGAGG 1997
Score = 468 bits (253), Expect = 9e-131
Identities = 293/311 (94%), Gaps = 7/311 (2%)
Strand=Plus/Plus
Query 7 TAGTAGAA-G-TAAAGATGGAAGGGAAA-AGATTGGATCTTAGGTTTCATCACTCTGTAT 63
|||||||| | ||||||||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct 122 TAGTAGAAGGTTAAAGATGGAA-GGAAAGAGATTGGATCTTAGATTTCATCACTC--TA- 177
Query 64 CATCATCACAATCTGTGGAATCTGCTGCATTGGATTTGGATAAAAACGGCTACAATCATA 123
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 178 CATCATCACAATCTGTGGAATCTGCTGCATTGGATTTGGATAAAAATGTTTACAATCATA 237
Query 124 TTAAATTGGCTTCTTCATCGCCGCTTCAACCGTTTCCATCAGGCGGTCAGCATCCTGAAA 183
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 238 TTAAATTGGCGTCTTCATCGCCGCTTCAACCGTTTCCATCAGGCGCTCAGCATCCTGAAA 297
Query 184 CTAGTGCTGCTGCTGCTTACTTCTCTTGGCCTACTTCAAGTCGATTGAACGATTCAGCAG 243
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
Sbjct 298 CTAGTGCTGCTGCTGCTTACTTCTCTTGGCCTACTTCAAGTAGATTGAATGATTCAGCGG 357
Query 244 AAGACAGAGCAAACTATTTTGCAAATCTTCAGAAAGGTGTTTTGCCTGAAACTTTTGATG 303
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 358 AAGACAGAGCAAACTATTTTGCAAATCTTCAAAAAGGTGTTTTGCCTGAAAGTTTTGATG 417
Query 304 GTTTACCTACT 314
|||||||||||
Sbjct 418 GTTTACCTACT 428
> AT2G35155.1 | Symbols: | Trypsin family protein | chr2:14818994-14821965
REVERSE LENGTH=2263
Length=2263
Score = 608 bits (329), Expect = 5e-173
Identities = 764/970 (79%), Gaps = 46/970 (5%)
Strand=Plus/Plus
Query 345 CTTGTTTTTGTTGCTCGGAAAGTTCACAAGCAATGGCTTAATCCTCCT-CAGTG-TTTAC 402
||||| ||||||||| ||||||| || | ||||||||| ||||| | ||||| || |
Sbjct 741 CTTGTCTTTGTTGCTAGGAAAGTCCATAGGCAATGGCTAAATCC-AATGCAGTGCCTT-C 798
Query 403 CTACAG-CCTTGGAGGGTCCTGGAGGAGTTTGGTGTGATGTAGATGTTGTTGAGTTTCAA 461
|| | | |||| |||||||||||||| || ||||| |||||||||||||| || || |||
Sbjct 799 CTTCTGCCCTT-GAGGGTCCTGGAGGGGTATGGTGCGATGTAGATGTTGTGGAATTCCAA 857
Query 462 TATTATGGTGCACCTGC-GCAAACGCCCAAA-GAGCAGGTGTATACA-GAGCTTGTTGAT 518
|| || ||||| ||||| || ||| ||||| || || || |||| | || ||||| |||
Sbjct 858 TACTACGGTGCTCCTGCTGC-AAC-ACCAAAGGAACAAGTTTATA-ATGAACTTGTAGAT 914
Query 519 GATCTGAGAGGCAGTGGTTCGTCCATCGGATCTGGTTCACAGGTGGCTAGCCAAGAGACA 578
| | ||||||| |||| | | | ||| || |||||||| ||||| || |||||||| |||
Sbjct 915 GGTTTGAGAGGAAGTGATCCCTGCATTGGCTCTGGTTCTCAGGTTGCAAGCCAAGAAACA 974
Query 579 TATGGAACCTTGGGAGCTATTGT-AAAGAGTAAAACCGG-AATCAGACAAGTTGGCTTCC 636
|||||||||||||||||||| || ||| || | ||| || || || || ||||| ||||
Sbjct 975 TATGGAACCTTGGGAGCTATAGTGAAA-AGCAGAACAGGTAACCA-CCAGGTTGGTTTCC 1032
Query 637 TTACAAACCGTCATGTTGCAGTTGATTTAGACTACCCAAGCCAGAAGATGTTTCATCCTT 696
|||| || || ||||| ||||||||||| || || ||||||||||| |||||||||||||
Sbjct 1033 TTACCAATCGGCATGTCGCAGTTGATTTGGATTATCCAAGCCAGAAAATGTTTCATCCTT 1092
Query 697 TGCCACCTAGCCTCGGACCCGGAGTCTACTTAGGTGCAGTGGAAAGAGCAACTTCATTCA 756
| || || ||||| ||||| || |||||| | |||||||| || |||||||| || || |
Sbjct 1093 TACCTCCAAGCCTTGGACCGGGTGTCTACCTCGGTGCAGTTGAGAGAGCAACATCGTTTA 1152
Query 757 TTACCGATGACCTTTGGTATGGCAT-TTTCGCTGGAACTAACCCAGAAACATTTGTTCGA 815
| || ||||| | ||||||||||| ||| ||||| || || |||||||| ||||| ||
Sbjct 1153 TCACAGATGATCAGTGGTATGGCATATTT-GCTGGCACAAATCCAGAAACGTTTGTGAGA 1211
Query 816 GCTGATGGAGCCTTCATACCATTTGCGGAGGACTTCAACATGAATAATGTAACCACAACT 875
|| ||||| ||||| || || ||||| || || ||||||| || |||||||| || |
Sbjct 1212 GCGGATGGTGCCTTTATTCCTTTTGCAGAAGATTTCAACACGAGCAATGTAACTAC-GTT 1270
Query 876 G-TCAAA-GGTATTGGTGAGATCGGTA-ATATCCATGCTACT-GATC-TACAGTCACCAA 930
| | ||| || ||||||||||| || | || | || | || | || | | || || ||||
Sbjct 1271 GAT-AAAGGGCATTGGTGAGATAGG-AGATGTGCACGTTA-TAGA-CTTGCAATCCCCAA 1326
Query 931 TCAACAGTC-TAATAGGAAGGA-AAGTTGTCAAAGTTGGAAGAAGCTCTGGTT-TGACCA 987
| | || | || | |||| | |||||||||||||||||||||||||||| | | ||||
Sbjct 1327 TTGATAGCCTTATTGGGAA--ACAAGTTGTCAAAGTTGGAAGAAGCTCTGGATAT-ACCA 1383
Query 988 CTGGGACCATAATGGCATATGCGTTGGAATACAATGACGAGAAAGGGATTTGTTTCCTAA 1047
| || ||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| |
Sbjct 1384 CCGGAACCATAATGGCTTATGCATTGGAATACAACGACGAGAAAGGGATCTGTTTCCTCA 1443
Query 1048 CTGATTTTCTTGTTGTTGGTGAAAACCAGCAGACTTTTGATCTTGAGGGTGACAGTGGAA 1107
| |||||||| || |||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1444 CGGATTTTCTGGTCATTGGTGAAAACCAGCAAACTTTTGACCTTGAAGGTGACAGTGGAA 1503
Query 1108 GCCTTATTCTGTTGGCTGCGGGCGATGAGAAGAATGAGAAACCGCGACCTGTTGGAATTA 1167
|||| || || || | | || | | | | | | |||| || ||||| ||||| || |
Sbjct 1504 GCCTAATACTCTTAAC-G-GGTCCA--A-ATGG-TCAGAAGCCACGACCAGTTGGGATCA 1557
Query 1168 TTTGGGGAGGAACAGCAAACAGGGGACGG-TTGAAGCTAAAAGTGGGGGAACAACCTGAG 1226
|||||||||||||||| ||| | ||| | || || |||| || || || |||| |||
Sbjct 1558 TTTGGGGAGGAACAGCCAACCGAGGAAGACTTAAA-CTAATAGCCGGTCAAGAACCCGAG 1616
Query 1227 AATTGGACAAGTGGAGTTGATCTTGGAAGAGTTCTTA-ATCTTCTTG-AGCTTGATCTCA 1284
|| |||||||| |||||||||||||| | || || |||| |||| ||||||||||||
Sbjct 1617 AACTGGACAAGCGGAGTTGATCTTGGTCGCCTT-TTGGATCT-CTTGGAGCTTGATCTCA 1674
Query 1285 TTACTTCCAA 1294
| || |||||
Sbjct 1675 TCACATCCAA 1684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87951354840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5