BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948552

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45070.1 | Symbols: AtPP2-A8, PP2-A8 | phloem protein 2-A8 |...   309    2e-83
  AT1G65390.1 | Symbols: ATPP2-A5, PP2-A5 | phloem protein 2 A5 |...  95.3    5e-19


> AT5G45070.1 | Symbols: AtPP2-A8, PP2-A8 | phloem protein 2-A8 
| chr5:18187630-18189431 REVERSE LENGTH=1403
Length=1403

 Score =  309 bits (167),  Expect = 2e-83
 Identities = 198/213 (93%), Gaps = 2/213 (1%)
 Strand=Plus/Plus

Query  13   AAAAAGCTCTC--ATGGCTGCTTCTTCTTCTGTGAGACAAACCCCAACGGGACCTCAAGT  70
            |||||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct  57   AAAAAGCTCTCTTATGGCTGCTTCTTCTTCTGTGAGACCCACCCCAACGGGACCTCAAGT  116

Query  71   GTTCATCAATTTCCGTGGAAAAGATGTGCGCAACGGCTTCATTAGCTTTCTTGAGCCTGC  130
            ||||||||| ||||| ||||||||| |||| ||||||||| | |||||||||||||||||
Sbjct  117  GTTCATCAACTTCCGAGGAAAAGATCTGCGTAACGGCTTCCTAAGCTTTCTTGAGCCTGC  176

Query  131  CATGAGAGAAGCTAGTATAAACGTCTTCATAGACAAGGACGAAGTGGTGGGCACAGATCT  190
            |||||||||||| |  |||||||| |||||||||||||||||||||||||||||||||||
Sbjct  177  CATGAGAGAAGCGAACATAAACGTTTTCATAGACAAGGACGAAGTGGTGGGCACAGATCT  236

Query  191  GGTTAACCTTTTTGTTAGGATCCAAGAGTCAAG  223
            ||||||||||||||| |||||||||||||||||
Sbjct  237  GGTTAACCTTTTTGTGAGGATCCAAGAGTCAAG  269


 Score =  257 bits (139),  Expect = 6e-68
 Identities = 200/229 (87%), Gaps = 6/229 (3%)
 Strand=Plus/Plus

Query  232  ATGAGCTGGCCCAGGTCAAGGATTGCATTTATCAAGGCGGTCTCAATGTGATTCCCATCT  291
            ||||||||||| || ||||||| |||||| |||||||||||||||||| |||||||||||
Sbjct  323  ATGAGCTGGCCGAGATCAAGGACTGCATTAATCAAGGCGGTCTCAATGCGATTCCCATCT  382

Query  292  TCTACAAACTTGCACCTTCCTCAGTGGAAGAACTCAAAGGAGGCTTTGGCGATACTTTCA  351
            |||||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||
Sbjct  383  TCTACAAACTTGCACCTTCCTCCGTGTTAGAACTCAAAGGAGGTTTTGGCGATACTTTCA  442

Query  352  GGGTTCTAAAGC-GCAAATATAAACACGA-CCATGAAAGAACTCAAAAATGGGAAGAAGC  409
            |||||||||||  | ||||||||| | || || ||||||||||||||||||| |||||||
Sbjct  443  GGGTTCTAAAGGAG-AAATATAAAAATGATCC-TGAAAGAACTCAAAAATGGCAAGAAGC  500

Query  410  TTTACAATTTATTCCTaaaa-aaaGGGGCATGACCTTTTCAGAACAAAG  457
            |||| | | ||||||||||  |||||| | |||  ||  ||||| ||||
Sbjct  501  TTTAGAGTCTATTCCTAAACTAAAGGGCC-TGAGATTGGCAGAAAAAAG  548


> AT1G65390.1 | Symbols: ATPP2-A5, PP2-A5 | phloem protein 2 A5 
| chr1:24292478-24294631 FORWARD LENGTH=1389
Length=1389

 Score = 95.3 bits (51),  Expect = 5e-19
 Identities = 69/78 (88%), Gaps = 0/78 (0%)
 Strand=Plus/Plus

Query  53   CCCAACGGGACCTCAAGTGTTCATCAATTTCCGTGGAAAAGATGTGCGCAACGGCTTCAT  112
            ||| ||||||||||||||||||||||||||||| || |||||| | || || ||||||||
Sbjct  142  CCCTACGGGACCTCAAGTGTTCATCAATTTCCGGGGGAAAGATTTACGAAAAGGCTTCAT  201

Query  113  TAGCTTTCTTGAGCCTGC  130
             ||||||||| |||||||
Sbjct  202  GAGCTTTCTTAAGCCTGC  219



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25619414970


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5