BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948553

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G63210.1 | Symbols: MARD1 | Protein of unknown function (DUF...   387    7e-107
  AT3G25400.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: NTP Pyrop...   167    1e-40 


> AT3G63210.1 | Symbols: MARD1 | Protein of unknown function (DUF581) 
| chr3:23353615-23355160 REVERSE LENGTH=1450
Length=1450

 Score =  387 bits (209),  Expect = 7e-107
 Identities = 291/329 (88%), Gaps = 12/329 (4%)
 Strand=Plus/Plus

Query  1    GTTTAGGGTTTTCACTTC--A-A-GATGATGACTTATTTTGACTCTGATTTCTCCCTCGT  56
            ||||||| ||||||||||  | | ||||||||||   ||||||||||||||||| |||||
Sbjct  383  GTTTAGGTTTTTCACTTCTAAGATGATGATGACTCCCTTTGACTCTGATTTCTCACTCGT  442

Query  57   CAGCCCTACGTCGATCCTAGAAGCTAACCCATCAATCTTCTCCTCCAAATACCCTAAACC  116
             ||||||||||| || || |||||||||||||| ||||||||||||||| ||||||||||
Sbjct  443  TAGCCCTACGTCTATACTCGAAGCTAACCCATCCATCTTCTCCTCCAAAAACCCTAAACC  502

Query  117  CGTTTCCTATTTCGAGCCCAGTATCTCTAATCCCCAACGTTTTCACACACCAGACGTCTT  176
            |||||||||||||||||| | |||| |||||||||| ||||||||| | |||||||||||
Sbjct  503  CGTTTCCTATTTCGAGCCAACTATCCCTAATCCCCAGCGTTTTCACTCTCCAGACGTCTT  562

Query  177  TGGCCTCGCCGATCTCGTCATATACGGAGACAGTAACAGAGACCACTCGAGAAA-CCTGT  235
            |||||| ||||||||||| | | ||||||||||||||||||||||||| ||||| |||||
Sbjct  563  TGGCCTAGCCGATCTCGTGAAAGACGGAGACAGTAACAGAGACCACTCTAGAAAACCTGT  622

Query  236  CAACGTACAAGATGGTCCTTTTCGGGTCGAAGCTCAGAGTCCAGATCCCATCAG-A--TG  292
            ||||  | | |||||||||||||||||| ||||||||||||||||||||||||  |  ||
Sbjct  623  CAAC--A-A-GATGGTCCTTTTCGGGTCAAAGCTCAGAGTCCAGATCCCATCATCAGCTG  678

Query  293  ATTTTGGAACTAAAACCGGTATGAGATAT  321
            ||||||||||||||||||| || ||||||
Sbjct  679  ATTTTGGAACTAAAACCGGCATCAGATAT  707


> AT3G25400.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase 
MazG-related, RS21-C6 (InterPro:IPR011394), 
EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative 
catalytic core (InterPro:IPR004518); Has 1123 Blast 
hits to 1121 proteins in 452 species: Archae - 22; Bacteria 
- 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other 
Eukaryotes - 181 (source: NCBI BLink). | chr3:9213156-9214281 
FORWARD LENGTH=643
Length=643

 Score =  167 bits (90),  Expect = 1e-40
 Identities = 96/99 (97%), Gaps = 0/99 (0%)
 Strand=Plus/Plus

Query  349  GTGGGTGAAGTGGGAGAGCTATTAGAGATATTCCAATGGAAAGGAGAAGTGGCAAGAGGA  408
            |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct  216  GTGGGTGAAGTGGGAGAGCTATCAGAGATATTCCAATGGAAAGGAGAAGTAGCAAGAGGA  275

Query  409  TGTCCAGATTGGAAAGAAGAAGAGAAAGTGCATCTTGGa  447
            ||||||||||||||||||||||||||||| |||||||||
Sbjct  276  TGTCCAGATTGGAAAGAAGAAGAGAAAGTCCATCTTGGA  314



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22655600297


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5