BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948554

Length=262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08740.1 | Symbols: NDC1 | NAD(P)H dehydrogenase C1 | chr5:2...   148    2e-35
  AT3G62440.1 | Symbols:  | F-box/RNI-like superfamily protein | ...   124    3e-28


> AT5G08740.1 | Symbols: NDC1 | NAD(P)H dehydrogenase C1 | chr5:2848506-2851428 
REVERSE LENGTH=1911
Length=1911

 Score =  148 bits (80),  Expect = 2e-35
 Identities = 90/95 (95%), Gaps = 0/95 (0%)
 Strand=Plus/Plus

Query  94   GGTTGGTTCTTGCCCTCGGCGCTGAATCTAAACTTGATGTTGTTCCCGGCGCAATGGAGT  153
            ||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct  689  GGTTGGTTCTTGCTCTTGGCGCTGAATCTAAACTCGATGTTGTTCCCGGTGCAATGGAGT  748

Query  154  TGGCTTTCCCATTCTACACTCTTGAAGATGCTATT  188
            ||||||||||||||||||||||||||||||| |||
Sbjct  749  TGGCTTTCCCATTCTACACTCTTGAAGATGCCATT  783


> AT3G62440.1 | Symbols:  | F-box/RNI-like superfamily protein 
| chr3:23096104-23097726 REVERSE LENGTH=1374
Length=1374

 Score =  124 bits (67),  Expect = 3e-28
 Identities = 78/83 (94%), Gaps = 2/83 (2%)
 Strand=Plus/Plus

Query  1    TTTGTCCGGAAGAAAATTATATGTGGGGTGAAGAAGATGAAAAACG-TTTCAATCCAATG  59
            ||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||||| 
Sbjct  824  TTTGTCCGGAAGAAAATTATATGTGGGGTAAAGGAGATGAAAAACGATTT-AATCCAATA  882

Query  60   AATCTGCTTCATGGGCTaaaaaa  82
            |||||||||||||||||||||||
Sbjct  883  AATCTGCTTCATGGGCTAAAAAA  905



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11963724262


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5