BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948560
Length=302
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07600.1 | Symbols: | Heavy metal transport/detoxification ... 403 4e-112
> AT3G07600.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr3:2424117-2425022 REVERSE LENGTH=725
Length=725
Score = 403 bits (218), Expect = 4e-112
Identities = 240/251 (96%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 9 AGAAGACAAGAACATGAAGCAAAAGATCCTGCTAAGAGTTGCTATGACTGATGACACAAC 68
||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 56 AGAAGACAATAACATGAAGCAAAAGATCCTGATAAGAATTGCTATGACTGATGACACAAC 115
Query 69 TAGAGCAAAAGCAATGAAAACTGCGGTTCAGTTTAAAGGCGTGAACGCTGTGGAAATAAA 128
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 TCGAGCAAAGGCAATGAAAACTGCGGTTCAGTTTAAAGGCGTGAACGCTGTGGAAATAAA 175
Query 129 GGGAGATCACAGGAACCAGATTGAGGTGACCGGTGTTGAAGTTGATATGATCGCTCTAAT 188
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 176 GGGAGATCACAGGAACCAGATTGAGGTGACCGGTGTTGAAGTCGATATGATTGCTCTAAT 235
Query 189 CAACACACTCAGGAAAAAAGTTGCATTTGCAGAGCTTGTTAGCGTAACTAAAGTTGAACC 248
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 236 CAACACACTCAGGAAAAAAGTTGCATTTGCGGAGCTTGTTAGCGTAGCTAAAGTTGAACC 295
Query 249 ACCCAAGCATG 259
||| ||| |||
Sbjct 296 ACCTAAGGATG 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13974434222
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5