BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948568

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45040.1 | Symbols:  | Cytochrome c | chr5:18175371-18176888...   780    0.0  
  AT5G45030.1 | Symbols:  | Trypsin family protein | chr5:1817247...   220    9e-57


> AT5G45040.1 | Symbols:  | Cytochrome c | chr5:18175371-18176888 
REVERSE LENGTH=760
Length=760

 Score =  780 bits (422),  Expect = 0.0
 Identities = 505/544 (93%), Gaps = 9/544 (2%)
 Strand=Plus/Plus

Query  19   GAGATGAGTCTTCTTCTCTCTTGTGCTTCTGCTCGCACCTCCAATCTTTTTTGTTCCTCC  78
            |||||||| ||| |||||||| |||| ||| ||  ||||||||| |||||||||||||||
Sbjct  35   GAGATGAGACTTGTTCTCTCTGGTGCCTCTTCTTTCACCTCCAACCTTTTTTGTTCCTCC  94

Query  79   CAAAAGGTCAATGGAAGA-GAAAGAGAATTGCAATACCCAA-TTCTTCCAAATCACAACA  136
            ||| |||||||||||||| |||| |||| || || |||||| ||| || ||| |||||||
Sbjct  95   CAACAGGTCAATGGAAGAGGAAA-AGAACTGAAAAACCCAATTTC-TCTAAACCACAACA  152

Query  137  AAGATTTGAACTTTCTGATAAAGAAGTTAGCTCCGCCACTCACGGCGGTTCTACTTGCTG  196
            |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct  153  AAGATTTGGACTTTCTGTTAAAGAAGTTAGCTCCGCCACTCACGGCGGTTTTACTTGCTG  212

Query  197  TTTCACCCATCATCTGTTTCCCTCCAGAATCTCTAGGGCAGACTTTGGATATACAGAGAG  256
            ||||| ||  |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  213  TTTCA-CC--CATCTGTTTCCCTCCAGAATCTCTTGGGCAGACTTTGGATATACAGAGAG  269

Query  257  GAGCAACATTGTTTAATAGAGCTTGTATCGGGTGTCACGATACAGGTGGAAACATTATTC  316
            |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  270  GAGCTACATTGTTTAATAGAGCTTGTATCGGGTGTCATGATACAGGTGGAAACATTATTC  329

Query  317  AACC-GGTCGCAACGCTTTTCACAAAAGACCTCGAAAGAAATGGAGTTGATACCGAGGAA  375
            |||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  330  AACCTGGT-GCAACGCTTTTCACAAAAGACCTCGAAAGAAATGGAGTTGATACTGAGGAA  388

Query  376  GAGATATATCGTGTTACCTACTTTGGAAAGGGAAGAATGCCGGGATTTGGAGAGAAATGC  435
            || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  389  GAAATATATCGTGTTACCTACTTTGGAAAGGGAAGAATGCCGGGATTTGGTGAGAAATGC  448

Query  436  ACACCGAGAGGACAATGTACCTTTGGACCGCGGTTGCAAGACGAAGAAATCAAGCTTCTG  495
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct  449  ACACCGAGAGGACAATGTACCTTTGGACCGCGGTTGCAGGACGAAGAAATCAAGCTTCTC  508

Query  496  GCTGAATTTGTAAAGTTTCAAGCTGACAAAGGTTGGCCAAATGTATCTACCGACTAGCGA  555
            ||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||||
Sbjct  509  GCTGAATTTGTAAAGTTTCAAGCTGACCAAGGCTGGCCAACTGTATCTACGGACTAGCGA  568

Query  556  GTAG  559
             |||
Sbjct  569  CTAG  572


> AT5G45030.1 | Symbols:  | Trypsin family protein | chr5:18172471-18176207 
FORWARD LENGTH=2816
Length=2816

 Score =  220 bits (119),  Expect = 9e-57
 Identities = 135/143 (94%), Gaps = 0/143 (0%)
 Strand=Plus/Minus

Query  417   GGGATTTGGAGAGAAATGCACACCGAGAGGACAATGTACCTTTGGACCGCGGTTGCAAGA  476
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  2424  GGGATTTGGTGAGAAATGCACACCGAGAGGACAATGTACCTTTGGACCGCGGTTGCAGGA  2365

Query  477   CGAAGAAATCAAGCTTCTGGCTGAATTTGTAAAGTTTCAAGCTGACAAAGGTTGGCCAAA  536
             |||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| 
Sbjct  2364  CGAAGAAATCAAGCTTCTCGCTGAATTTGTAAAGTTTCAAGCTGACCAAGGCTGGCCAAC  2305

Query  537   TGTATCTACCGACTAGCGAGTAG  559
             ||||||||| ||||||||| |||
Sbjct  2304  TGTATCTACGGACTAGCGACTAG  2282


 Score =  167 bits (90),  Expect = 1e-40
 Identities = 96/99 (97%), Gaps = 0/99 (0%)
 Strand=Plus/Minus

Query  222   AGAATCTCTAGGGCAGACTTTGGATATACAGAGAGGAGCAACATTGTTTAATAGAGCTTG  281
             ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  2814  AGAATCTCTTGGGCAGACTTTGGATATACAGAGAGGAGCTACATTGTTTAATAGAGCTTG  2755

Query  282   TATCGGGTGTCACGATACAGGTGGAAACATTATTCAACC  320
             |||||||||||| ||||||||||||||||||||||||||
Sbjct  2754  TATCGGGTGTCATGATACAGGTGGAAACATTATTCAACC  2716


 Score = 54.7 bits (29),  Expect = 1e-06
 Identities = 32/33 (97%), Gaps = 1/33 (3%)
 Strand=Plus/Minus

Query  321   GGTCGCAACGCTTTTCACAAAAGACCTCGAAAG  353
             ||| |||||||||||||||||||||||||||||
Sbjct  2627  GGT-GCAACGCTTTTCACAAAAGACCTCGAAAG  2596



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27578546703


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5