BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948572
Length=348
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64740.1 | Symbols: TUA1 | alpha-1 tubulin | chr1:24050006-2... 302 2e-81
> AT1G64740.1 | Symbols: TUA1 | alpha-1 tubulin | chr1:24050006-24052487
FORWARD LENGTH=1652
Length=1652
Score = 302 bits (163), Expect = 2e-81
Identities = 235/266 (88%), Gaps = 19/266 (7%)
Strand=Plus/Plus
Query 95 GGTGACCTGGCAAAGGTTCAACGAGCGGTTTGCATGATCAGCAACAATACTGCAGTGGCT 154
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1204 GGTGACCTGGCTAAGGTTCAACGAGCGGTTTGCATGATCAGCAATAATACTGCAGTTGCT 1263
Query 155 GAAGTGTTCTTACGTATAGACCATAAGTTTGATTTGATGTACTCCACAAGAGCCTTTGTC 214
|||||||||| |||||||||||||||||||||| | |||||||||| |||||||||||||
Sbjct 1264 GAAGTGTTCTCACGTATAGACCATAAGTTTGATCTCATGTACTCCAAAAGAGCCTTTGTC 1323
Query 215 CATTGGTATGTAGGAGAGGGCATGGAAGAAGGAGAGTTCTCTG-GCC-CTGTGAGGAT-T 271
|||||||||||||||||||| |||||||||||||||||||||| | | | |||||||| |
Sbjct 1324 CATTGGTATGTAGGAGAGGGTATGGAAGAAGGAGAGTTCTCTGAGGCTC-GTGAGGATCT 1382
Query 272 --CTGCCCTC-AG---GA--A-G------TTGGTGCAGAAGGAGCAGAGGACGAAGACGA 316
|||||||| || || | | |||||| ||||||||| |||||||| |||||
Sbjct 1383 TGCTGCCCTCGAGAAAGATTATGAGGAAGTTGGTGGAGAAGGAGCGGAGGACGACGACGA 1442
Query 317 AGAAGGCGATGAGTATTAGAAAGACA 342
||||||||||||||||||||||||||
Sbjct 1443 AGAAGGCGATGAGTATTAGAAAGACA 1468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16286750676
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5