BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948576
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44980.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 514 5e-145
AT5G44960.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 436 1e-121
AT5G44940.1 | Symbols: | F-box/RNI-like superfamily protein | ... 385 4e-106
> AT5G44980.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18160290-18162264 FORWARD LENGTH=1592
Length=1592
Score = 514 bits (278), Expect = 5e-145
Identities = 481/578 (83%), Gaps = 17/578 (3%)
Strand=Plus/Plus
Query 3 CCTGCAAAAGTTCAAGATAATGTATGACGAATGCAATGGTTATCGAGATCGATTCATGGA 62
|||| ||||||||| ||||| ||||| ||| || || ||||||||||||||||| |||||
Sbjct 309 CCTGAAAAAGTTCATGATAACGTATGTCGATTGTAAAGGTTATCGAGATCGATTAATGGA 368
Query 63 CCTGACCGGTACAGTGGTTGATCGTGGAATTCAACACTTGGATGTCTTTATGAATAGTTG 122
||| ||||||| ||||||||| |||| |||| || ||| |||| |||||| ||| ||
Sbjct 369 GTTGATCGGTACACTGGTTGATCATGGACTTCAGCATTTGTATGTTTTTATGCATACTTT 428
Query 123 CAAAAGA-TATAATTTCATGCGTGAGAACATTTACAAGAGCAAGACATTGGTCTCTTTGT 181
| ||| | | |||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 429 TGACAGAGT-TGATTTCAAACGTCAAAACATTTACAAGAGCAAGACATTGGTCTCTTTGA 487
Query 182 CGCTTTATAACGTAGAGTTAAAGAATCCAGAGTTTGTTGTTTCTCTAGCTTGTCTCAAGA 241
|||| |||||||||||||||||||| |||| ||||||||||||||| ||||||||||||
Sbjct 488 AGCTTCATAACGTAGAGTTAAAGAATTCAGACTTTGTTGTTTCTCTACCTTGTCTCAAGA 547
Query 242 TCATGCATCTGT-GCAACGTTTGTTACGGTGAGGATGGTCCTTTGGATGTGGAGAAGCTT 300
|| || | ||| | || ||||| ||||||||||||||||||||| ||||||||||||
Sbjct 548 TCTTGAAACTGGAG-AATATTTGTCACGGTGAGGATGGTCCTTTGGTTGTGGAGAAGCTC 606
Query 301 ATATCAGGATGTCCTGTTCTTGAAGATCTTAAGCTGGTTAGGCTTTTTAATATTTTGAGT 360
|| ||||||||| ||||||||||||||||| ||||| |||||| |||| ||||| ||
Sbjct 607 ATCTCAGGATGTTCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTTTGATATTAGGACA 666
Query 361 CA-AGATGTTCTGCTGTTTTTGCGTGTGAGCTCTCAGACTATGGAAAGCCTT-CGTTTAT 418
|| | | ||||| ||| || |||||||||||||||||||| || ||||| || | || |
Sbjct 667 CATAAA-GTTCTTCTGCTTCTGCGTGTGAGCTCTCAGACTCTGAAAAGCTTTACCTT-AC 724
Query 419 ATTTTGCCATAGATAATACAGG-TGGTACAGATTTTTCAGTTGAGATTAATGCTCCAAGA 477
||||||| || || || ||| | ||||||||||||||||||||||| |||||||||||
Sbjct 725 ATTTTGCGATC--TA-TA-AGGATCGTACAGATTTTTCAGTTGAGATTGATGCTCCAAGA 780
Query 478 CTCAAGTATATGACATGTT-ATGAGAGTCTATTTGATAGAATTATGGTAAAGAACCTGAG 536
|||||||||||||| |||| | |||||| || |||||| ||| ||||||||||||||||
Sbjct 781 CTCAAGTATATGAC-TGTTGAACAGAGTCAATCTGATAGCATTGTGGTAAAGAACCTGAG 839
Query 537 TTCTTTGTTTA-CTATCGACATCAATACCAAATATAAT 573
||| ||||| | | |||||||| ||| |||| ||||
Sbjct 840 TTCCTTGTTCAGC-ATCGACATTGGTACTAAATTTAAT 876
> AT5G44960.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18153852-18155391 FORWARD LENGTH=1251
Length=1251
Score = 436 bits (236), Expect = 1e-121
Identities = 349/403 (87%), Gaps = 10/403 (2%)
Strand=Plus/Plus
Query 3 CCTGCAAAAGTTCAAGATAATGTATGACGAATGCAATGGTTATCGAGATCGATTCATGGA 62
|||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 234 CCTGCAAAAGTTCATGATAAGGTATTTCGAATGCAATGGTTATCGAGATCGATTCATGGA 293
Query 63 CCTGACCGGTACAGTGGTTGATCGTGGAATTCAACACTTGGATGTCTT-TATGAATAGTT 121
||| |||||||||||||||| ||||||||||||| ||| |||| || |||| ||| ||
Sbjct 294 GTTGATCGGTACAGTGGTTGATTGTGGAATTCAACATTTGTATGT-TTATATGCATACTT 352
Query 122 GCAAAAGA-TATAATTTCATGCGTGAGAACATTTACAAGAGCAAGACATTGGTCTCTTTG 180
| || ||| | | ||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 353 GTAATAGAGT-TGATTTCATACGTCAAAACATTTACAAGAGCAAGACATTGGTCTCTTTG 411
Query 181 TCGCTTTATAACGTAGAGTTAAAGAATCCAGAGTTTGTTGTTTCTCTAGCTTGTCTCAAG 240
|||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||
Sbjct 412 AAGCTTTATAACGTAGAGTTGAAGAATCCAGACTTTGTTGTTTCTCTACCTTGTCTCAAG 471
Query 241 ATCATGCATCTG-TGCAACGTTTGTTACGGTGAGGATGGTCCTTTGGATGTGGAGAAGCT 299
||| || | ||| || || ||||||||||||||||||| ||||||| ||||||||||||
Sbjct 472 ATCTTGAAACTGATGAAAA-TTTGTTACGGTGAGGATGGCCCTTTGGTTGTGGAGAAGCT 530
Query 300 TATATCAGGATGTCCTGTTCTTGAAGATCTTAAGCTGGTTAGGCTTTTTAATATTTTGAG 359
|| ||||||||||||||||||||||||||| ||||| ||| || |||| |||||||||
Sbjct 531 CATCTCAGGATGTCCTGTTCTTGAAGATCTTGAGCTGATTAAGCCTTTTGATATTTTGAC 590
Query 360 TCAAGATGTTCTGCTGTTTTTGCGTGT-GA-GCTCTCA-GACT 399
||| || ||| | |||||| ||||| | || |||| || ||||
Sbjct 591 TCAGGACGTTATACTGTTTCTGCGTATTGATGCTC-CACGACT 632
> AT5G44940.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:18149369-18150892 FORWARD LENGTH=1134
Length=1134
Score = 385 bits (208), Expect = 4e-106
Identities = 305/351 (87%), Gaps = 10/351 (3%)
Strand=Plus/Plus
Query 3 CCTGCAAAAGTTCAAGATAATGTATGACGAATGCAATGGTTATCGAGATCGATTCATGGA 62
|||||||||||||| ||||| |||| |||| ||||||||||||||||||||| |||||
Sbjct 240 CCTGCAAAAGTTCATGATAACGTATTTCGAACACAATGGTTATCGAGATCGATTAATGGA 299
Query 63 CCTGACCGGTACAGTGGTTGATCGTGGAATTCAACACTTGGATGTCTT-TATGAATAGTT 121
||| ||||||| |||||||||||||||||||||| ||| |||| || |||| ||| ||
Sbjct 300 GTTGATCGGTACACTGGTTGATCGTGGAATTCAACATTTGTATGT-TTATATGCATACTT 358
Query 122 GCAAAAGA-TATAATTTCATGCGTGAGAACATTTACAAGAGCAAGACATTGGTCTCTTTG 180
| || ||| | | ||||||| ||| | |||||||||||||| ||||||||||||||||||
Sbjct 359 GTAACAGAGT-TGATTTCATACGTCAAAACATTTACAAGAGTAAGACATTGGTCTCTTTG 417
Query 181 TCGCTTTATAACGTAGAGTTAAAGAATCCAGAGTTTGTTGTTTCTCTAGCTTGTCTCAAG 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 418 AAGCTTTATAACGTAGAGTTAAAGAATCCAGAGTTTGTTGTTTCTCTACCTTGTCTCAAG 477
Query 241 ATCATGCATCTGT-GCAACGTTTGTT-ACGGTGAGGATGGTCCTTTGGAT-GTGGAGAAG 297
||| || | ||| | || ||| || ||||||||||||||||||||| | |||||||||
Sbjct 478 ATCTTGAAACTGGAG-AATATTT-TTCACGGTGAGGATGGTCCTTTGG-TCGTGGAGAAG 534
Query 298 CTTATATCAGGATGTCCTGTTCTTGAAGATCTTAAGCTGGTTAGGCTTTTT 348
|| || ||||||||||||||||||||||||||| ||||| |||||| ||||
Sbjct 535 CTCATCTCAGGATGTCCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTTT 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34912732165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5