BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948577
Length=839
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44980.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 625 2e-178
AT5G44960.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 499 2e-140
AT5G44940.1 | Symbols: | F-box/RNI-like superfamily protein | ... 479 2e-134
AT5G44970.1 | Symbols: | Protein with RNI-like/FBD-like domain... 169 5e-41
> AT5G44980.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18160290-18162264 FORWARD LENGTH=1592
Length=1592
Score = 625 bits (338), Expect = 2e-178
Identities = 638/777 (82%), Gaps = 44/777 (6%)
Strand=Plus/Plus
Query 45 GTTCCTGGACTTAAATTACGCACCAGTGAATTCCCCA-ATCCT--T-GTGAAGAAGGCTT 100
||||||||||| ||||| |||| | |||| | || ||||| | | |||||| |||
Sbjct 205 GTTCCTGGACTCGAATTATTCACCCTTCAATT-CACATATCCTGATCGCGAAGAAATCTT 263
Query 101 CGCAAGGTTTATGGACAGATTTATGGAGTTTAACTGCCA-GTCACACTTGGAAAAGTTCG 159
| |||||||||||||||||||||||||||||| || || ||||| | || ||||||||
Sbjct 264 TGTAAGGTTTATGGACAGATTTATGGAGTTTAAGTG-CAGGTCACGCCTGAAAAAGTTC- 321
Query 160 A-GATAACTTATTTCGAATGCAATGGCTATCGAGATCGATTCATGGACCTGATCGGTACA 218
| |||||| ||| |||| || || || |||||||||||||| ||||| |||||||||||
Sbjct 322 ATGATAACGTATGTCGATTGTAAAGGTTATCGAGATCGATTAATGGAGTTGATCGGTACA 381
Query 219 GTGGTTGATCGTGGAATTCAACACTTGGATGTTTTAATGTATACTTGCAACAGAAATGAT 278
||||||||| |||| |||| || ||| ||||||| ||| |||||| ||||| ||||
Sbjct 382 CTGGTTGATCATGGACTTCAGCATTTGTATGTTTTTATGCATACTTTTGACAGAGTTGAT 441
Query 279 TTCATACGTCAGAACATTTACAAGAGCAAGACATTGGTCTCTTTGAACCTTG-TAAATAT 337
|||| |||||| ||||||||||||||||||||||||||||||||||| ||| ||| |
Sbjct 442 TTCAAACGTCAAAACATTTACAAGAGCAAGACATTGGTCTCTTTGAAGCTTCATAACG-T 500
Query 338 AGAGTTAAAGAAACCAGAGTTTGTTGTTTCTCTACCTTGTCTCAAGATCATGCGTCT--A 395
|||||||||||| |||| |||||||||||||||||||||||||||||| || || |
Sbjct 501 AGAGTTAAAGAATTCAGACTTTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAACTGGA 560
Query 396 TGCAACGTTTGTTACGGTGAGGATGGTCCTATTG-TTGTGGAGAAGCTCATCTCAGGATG 454
| || ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 561 -G-AATATTTGTCACGGTGAGGATGGTCCT-TTGGTTGTGGAGAAGCTCATCTCAGGATG 617
Query 455 TCCTGTTCTTGAAGATCTTCAACTGCTTAGGCCTTTTGGTATTTTGA-ATCAAAAAGTTC 513
| ||||||||||||||||| | ||| |||||||||||| |||| || | || |||||||
Sbjct 618 TTCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTTTGATATTAGGACA-CATAAAGTTC 676
Query 514 TGCTGTTTCTGCGTATAAGGTCTCAGACACTGAAAAGCCTTCAAGTGTCTTTTACACCTT 573
| ||| |||||||| | || |||||||| ||||||||| || | ||| ||| ||
Sbjct 677 TTCTGCTTCTGCGTGTGAGCTCTCAGACTCTGAAAAGCTTT-AC----CTT--ACA--TT 727
Query 574 TT---ATCAATACG-AGGGGTACAGATTTTTCAGTTGAGATTGATACTCCACA-ACTCAA 628
|| ||| ||| | | | ||||||||||||||||||||||||| ||||| | ||||||
Sbjct 728 TTGCGATCTATAAGGATCG-TACAGATTTTTCAGTTGAGATTGATGCTCCA-AGACTCAA 785
Query 629 GTATATGACTGTTGAACAGTGTCACTCGGATAGCATTATGGTAAAGAAACTTAGTTCCTT 688
||||||||||||||||||| |||| || ||||||||| |||||||||| || ||||||||
Sbjct 786 GTATATGACTGTTGAACAGAGTCAATCTGATAGCATTGTGGTAAAGAACCTGAGTTCCTT 845
Query 689 GTTCAGGATCGACATTGGTTCCAAATTGCATCCTTTGAGACATTTTGAT-T-----T--- 739
|||||| |||||||||||| | ||||| |||||||||||||| ||| | |
Sbjct 846 GTTCAGCATCGACATTGGTACTAAATTTAATCCTTTGAGACATGAGGATCTAAGGATGCG 905
Query 740 TAATATTTTCCGTGATTTTTTAACCGGGATATCTAGTGTAAGACATATGATCATCTG 796
|||| ||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 906 TAATGTTTTCTACGATTTTTTAACCGGGATATCTAGTGTAAAACATATGATCATCTG 962
> AT5G44960.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18153852-18155391 FORWARD LENGTH=1251
Length=1251
Score = 499 bits (270), Expect = 2e-140
Identities = 424/496 (85%), Gaps = 19/496 (4%)
Strand=Plus/Plus
Query 45 GTTCCTGGACTTAAATTACGCA-CCAGTGAATTCCCCAATCCT--T-GTGAAGAAGGCTT 100
|||||||||||| | ||| || || | ||||| | |||||| | ||||||||||||
Sbjct 130 GTTCCTGGACTTGACTTATTCAGCC-TTCAATTCACAAATCCTCATCATGAAGAAGGCTT 188
Query 101 CG-CAAGGTTTATGGACAGATTTATGGAGTTTAACTGCCA-GTCACACTTGGAAAAGTTC 158
| || ||||||||||||||||||||||| |||||| || ||||| | || ||||||||
Sbjct 189 -GATAAAGTTTATGGACAGATTTATGGAGTCTAACTG-CAGGTCACGCCTGCAAAAGTTC 246
Query 159 GA-GATAACTTATTTCGAATGCAATGGCTATCGAGATCGATTCATGGACCTGATCGGTAC 217
| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 247 -ATGATAAGGTATTTCGAATGCAATGGTTATCGAGATCGATTCATGGAGTTGATCGGTAC 305
Query 218 AGTGGTTGATCGTGGAATTCAACACTTGGATGTTTTA-ATGTATACTTGCAACAGAAATG 276
|||||||||| ||||||||||||| ||| ||| |||| ||| ||||||| || ||| ||
Sbjct 306 AGTGGTTGATTGTGGAATTCAACATTTGTATG-TTTATATGCATACTTGTAATAGAGTTG 364
Query 277 ATTTCATACGTCAGAACATTTACAAGAGCAAGACATTGGTCTCTTTGAACCTTGTA-AAT 335
||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 365 ATTTCATACGTCAAAACATTTACAAGAGCAAGACATTGGTCTCTTTGAAGCTT-TATAAC 423
Query 336 ATAGAGTTAAAGAAACCAGAGTTTGTTGTTTCTCTACCTTGTCTCAAGATCATGCGTCT- 394
||||||| ||||| ||||| |||||||||||||||||||||||||||||| || ||
Sbjct 424 GTAGAGTTGAAGAATCCAGACTTTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAACTG 483
Query 395 ATGCAACGTTTGTTACGGTGAGGATGGTCCTATT-GTTGTGGAGAAGCTCATCTCAGGAT 453
||| || ||||||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct 484 ATG-AAAATTTGTTACGGTGAGGATGGCCCT-TTGGTTGTGGAGAAGCTCATCTCAGGAT 541
Query 454 GTCCTGTTCTTGAAGATCTTCAACTGCTTAGGCCTTTTGGTATTTTGAATCAAAAAGTTC 513
|||||||||||||||||||| | ||| ||| |||||||| |||||||| ||| | |||
Sbjct 542 GTCCTGTTCTTGAAGATCTTGAGCTGATTAAGCCTTTTGATATTTTGACTCAGGACGTTA 601
Query 514 TGCTGTTTCTGCGTAT 529
| ||||||||||||||
Sbjct 602 TACTGTTTCTGCGTAT 617
> AT5G44940.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:18149369-18150892 FORWARD LENGTH=1134
Length=1134
Score = 479 bits (259), Expect = 2e-134
Identities = 373/426 (88%), Gaps = 16/426 (4%)
Strand=Plus/Plus
Query 75 TTCCCCAATCCTTGTGAAGAAGGCTTCGCAAGGTTTATGGACAGATTTATGGAGTTTAAC 134
|||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 169 TTCCCCTATCCTTATGAAGAAGGCTTCGTAAGGTTTATGGACAGATTTATGGAGTTTAAG 228
Query 135 TGCCA-GTCACACTTGGAAAAGTTCGA-GATAACTTATTTCGAATGCAATGGCTATCGAG 192
|| || ||||| | || |||||||| | |||||| ||||||||| |||||| |||||||
Sbjct 229 TG-CAGGTCACGCCTGCAAAAGTTC-ATGATAACGTATTTCGAACACAATGGTTATCGAG 286
Query 193 ATCGATTCATGGACCTGATCGGTACAGTGGTTGATCGTGGAATTCAACACTTGGATGTTT 252
||||||| ||||| ||||||||||| |||||||||||||||||||||| ||| ||| ||
Sbjct 287 ATCGATTAATGGAGTTGATCGGTACACTGGTTGATCGTGGAATTCAACATTTGTATG-TT 345
Query 253 TA-ATGTATACTTGCAACAGAAATGATTTCATACGTCAGAACATTTACAAGAGCAAGACA 311
|| ||| ||||||| |||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct 346 TATATGCATACTTGTAACAGAGTTGATTTCATACGTCAAAACATTTACAAGAGTAAGACA 405
Query 312 TTGGTCTCTTTGAACCTTGTA-AATATAGAGTTAAAGAAACCAGAGTTTGTTGTTTCTCT 370
|||||||||||||| ||| || || ||||||||||||| ||||||||||||||||||||
Sbjct 406 TTGGTCTCTTTGAAGCTT-TATAACGTAGAGTTAAAGAATCCAGAGTTTGTTGTTTCTCT 464
Query 371 ACCTTGTCTCAAGATCATGCGTCT--ATGCAACGTTTGTT-ACGGTGAGGATGGTCCTAT 427
|||||||||||||||| || || | | || ||| || ||||||||||||||||| |
Sbjct 465 ACCTTGTCTCAAGATCTTGAAACTGGA-G-AATATTT-TTCACGGTGAGGATGGTCCT-T 520
Query 428 TGTT-GTGGAGAAGCTCATCTCAGGATGTCCTGTTCTTGAAGATCTTCAACTGCTTAGGC 486
|| | |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 521 TGGTCGTGGAGAAGCTCATCTCAGGATGTCCTGTTCTTGAAGATCTTGAGCTGATTAGGC 580
Query 487 CTTTTG 492
||||||
Sbjct 581 CTTTTG 586
> AT5G44970.1 | Symbols: | Protein with RNI-like/FBD-like domains
| chr5:18155837-18157340 FORWARD LENGTH=1170
Length=1170
Score = 169 bits (91), Expect = 5e-41
Identities = 157/188 (84%), Gaps = 8/188 (4%)
Strand=Plus/Plus
Query 290 GAACATTTACAAGAGCAAGACATTGGTCTCTTTGAACCTTGTAAATATAGAG-TTAAAGA 348
||||||||| ||||| ||||||||||| ||||| || |||||| ||||| || |||
Sbjct 225 GAACATTTATAAGAGTAAGACATTGGTGTCTTTAAAGCTTGTATGCGTAGAGCTT-GAGA 283
Query 349 AACCAGAGTTTGTTGTTTCTCTACCTTGTCTCAAGATCATGCGTCTATGCAACGT--TTG 406
| ||| |||||||||||||||||||||||||||||||||||| |||| | || | |||
Sbjct 284 ATCCAAAGTTTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTA-GAAAA-TAATTG 341
Query 407 TTACGGTGAGGATGGTCCTATTG-TTGTGGAGAAGCTCATCTCAGGATGTCCTGTTCTTG 465
|||||| | |||| |||| ||| |||||||||| |||||| |||| |||| ||||||||
Sbjct 342 GTACGGTTATGATGCTCCT-TTGGTTGTGGAGAAACTCATCGCAGGGTGTCTTGTTCTTG 400
Query 466 AAGATCTT 473
||||||||
Sbjct 401 AAGATCTT 408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40890595658
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5