BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948591
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44860.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1655 0.0
AT4G19950.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 941 0.0
AT1G31130.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 479 2e-134
> AT5G44860.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G19950.1);
Has 233 Blast hits to 227 proteins in 25 species: Archae -
0; Bacteria - 13; Metazoa - 1; Fungi - 0; Plants - 216; Viruses
- 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr5:18110458-18111812
REVERSE LENGTH=1355
Length=1355
Score = 1655 bits (896), Expect = 0.0
Identities = 972/1009 (96%), Gaps = 3/1009 (0%)
Strand=Plus/Plus
Query 2 ACAAACCCTAATCTCAGCCATGGATCTCGCTGCAGAAGAGCTTCAATTTCTCAACATTCA 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 ACAAACCCTAATCTCAGCCATGGATCTCGCTGCAGAAGAGCTTCAATTTCTCAACATTCA 200
Query 62 AGGTATACTACGTGAATCCACAACAATCCCCAAATTTTCCCCAAAAACCTTTTACCTCAT 121
||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 201 AGGCATATTACGTGAATCCACAACAATCCCCAAATTTTCCCCAAAAACCTTCTACCTCAT 260
Query 122 AACCCTAACCCTAATTTTCCCTCTTTCCTTCGCAATCCTCGCTCATTCTCTCTTTACCCA 181
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 261 AACCCTAACCCTAATTTTCCCTCTCTCCTTCGCAATCCTCGCTCATTCCCTCTTTACCCA 320
Query 182 ACCAATCTTAGCTCAGCTTGATTCAACTCCTCCTTCAGATCAATCTAAAACCAATCATGA 241
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 321 ACCAATCTTAGCTCAGCTAGATGCAACTCCTCCTTCAGATCAATCTAAAACCAATCACGA 380
Query 242 ATGGACCCTTCTTCTTGTTTATCAATTCATCTATGTTATCTTCCTCTTCGCCTTCTCTCT 301
||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||
Sbjct 381 ATGGACCCTTCTTCTCATTTATCAATTCATCTACGTCATCTTCCTCTTCGCCTTCTCTCT 440
Query 302 TCTCTCCACAGCCGCCGTCGTCTTCACCGTCGCTTCGCTTTACACGGGAAAGCCTGTTTC 361
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 441 TCTCTCAACAGCCGCCGTCGTCTTCACCGTCGCTTCGCTTTACACGGGAAAGCCAGTTTC 500
Query 362 TTTCTCTTCCACAATGTCAGCGATTCCTCTAGTTTTGAAGCGTTTGTTCATTACCTTCCT 421
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 501 TTTCTCTTCAACAATGTCAGCGATTCCTCTGGTTTTGAAGCGTTTGTTCATTACCTTCCT 560
Query 422 TTGGGTTTCTTTAATGATGCTTGTGTACAACTCTGTTTTCTTGTTGTTTCTTGTTGTTTT 481
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 561 TTGGGTTTCTTTAATGATGCTTGTGTACAACTCTGTCTTCTTGTTGTTTCTCGTTGTTTT 620
Query 482 GATCGTAGCTATCGATTTACAAAGCGTGATTCTCGCTGTTTTCTCGATGGTTGTGATCTT 541
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 621 GATCGTAGCTATCGATTTACAAAGCGTGATTCTCGCTGTCTTCTCGATGGTTGTGAT-TT 679
Query 542 T-GTTCTGTTTTTGGGTGTTCATGTTTATATGACTGCTTGGTGGCATTTAGCTAGTGTTG 600
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 680 TCGTTCTGTTTTTGGGTGTTCATGTTTACATGACTGCTTGGTGGCATTTAGCTAGTGTAG 739
Query 601 TCTCTGTTCTTGAACCGATTTACGGGATTGCCGCGATGAAGAAGAGTTATGAGTTGCTTA 660
||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 740 TCTCTGTTCTTGAACCGATTTACGGTATCGCCGCGATGAAGAAGAGTTACGAGTTGCTTA 799
Query 661 AAGGGAGAACTAATATGGCGTGTTCGATGGTTTTTATGTATCTTGCTCTTTGTGGAATCA 720
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 ATGGAAGAACTAATATGGCGTGTTCGATGGTTTTTATGTATCTTGCTCTTTGTGGAATCA 859
Query 721 CTGCTGGTGTTTTCGGTGGTGTTGTGGTTCATGGAGGTGATGATTTCGGGTTGTTTACGA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 CTGCTGGTGTTTTCGGTGGTGTTGTGGTTCATGGAGGTGATGATTTCGGGTTGTTTACGA 919
Query 781 AGATTGTTGTTGGTGGTTTCTTGGTTGGGATTCTAGTGATTGTGAATCTAGTGGGGTTGC 840
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 920 AGATTGTTGTTGGTGGTTTCTTGGTTGGGATTCTAGTGATTGTGAATCTAGTTGGGCTGC 979
Query 841 TTGTGCAGAGTGTGTTTTACTATGTTTGTAAGAGTTTTCATCATCAGCCGATTGATAAAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 TTGTGCAGAGTGTGTTTTACTATGTTTGTAAGAGTTTTCATCATCAGCCGATTGATAAAT 1039
Query 901 CCGCGTTGCACGATCATCTTGGTGGGTATCTTGGTGATTATGTGCCTTTAAAGAGCAGCA 960
| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |
Sbjct 1040 CTGCGTTGCACGATCATCTTGGTGGATATCTTGGTGACTATGTGCCGTTAAAGAGCAGTA 1099
Query 961 TTCAGATGGAGAACTTTGATATTTAATCGTTAA-TGGATCGGATGATGA 1008
||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1100 TTCAGATGGAGAACTTTGATATTTAATCGTTAAATGGATTGGATGATGA 1148
> AT4G19950.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G44860.1);
Has 338 Blast hits to 330 proteins in 72 species: Archae -
2; Bacteria - 94; Metazoa - 7; Fungi - 0; Plants - 232; Viruses
- 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr4:10809877-10811084
FORWARD LENGTH=1208
Length=1208
Score = 941 bits (509), Expect = 0.0
Identities = 829/980 (85%), Gaps = 36/980 (4%)
Strand=Plus/Plus
Query 18 GCCATGGATCTCGCTGCAGAAGAGCTTCAATTTCTCAACATTCA-AGGTATACTACGTGA 76
||||||||||| || |||| ||||||||||||||||||| | ||| || ||||||||
Sbjct 98 GCCATGGATCTTGCCCCAGAGGAGCTTCAATTTCTCAACA-AAAGAGGAATTCTACGTGA 156
Query 77 ATCCACAACAATCCCCA-AATTTTCCCCAAAAACCTTTTACCTCATAACCCTAACCCTAA 135
||| ||| |||| |||| ||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 157 ATCAACATCAAT-CCCACAATATTCTCTAAAAACCTTTTACCTCATAACCCTAACCCTAA 215
Query 136 TTTTCCCTCTTTCCTTCGCAATCCTCGCTCATTCTCTCTTTACCCAACCAATCTTAGCTC 195
|||||||||| |||||||||||||| || ||||||||||| || ||||||||||||||||
Sbjct 216 TTTTCCCTCTCTCCTTCGCAATCCTAGCCCATTCTCTCTTCACACAACCAATCTTAGCTC 275
Query 196 AGCTTGATTCA-ACTCCTCCTTCAGATCAATCTAAAA-CCAATCATGAATGGACCCTTCT 253
|| | ||| || || || | | ||||||||| || |||| |||||||||||| | ||
Sbjct 276 AGATCGATACATAC-CCACAAGCCGATCAATCTCAACTCCAA-CATGAATGGACCGTCCT 333
Query 254 TCTTGTTTATC-AATTCAT-CTATGTTATCTTCCTCTTCGCCTTCTCTCTTCTCTCCACA 311
|| |||| || ||||| | ||| | |||||||||||||||||||||||||||||||||
Sbjct 334 CCTCGTTT-TCCAATTC-TGCTACATCATCTTCCTCTTCGCCTTCTCTCTTCTCTCCACA 391
Query 312 GCCGCCGTCGTCTTCACCGTCGCTTCGCTTTACACGGGAAAGCCTGTTTCTTTCTCTTCC 371
|||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 392 GCCGCCGTTGTCTTCACCGTCGCTTCTCTTTACACCGGAAAGCCTGTTTCTTTCTCCTCC 451
Query 372 ACAATGTCAGCGATTCCTCTAGTTTTGAAGCGTTTGTTCATTACCTTCCTTTGGGT-T-T 429
|||||||||||||| ||||| || | || | |||||||| || ||||| ||||| | |
Sbjct 452 ACAATGTCAGCGATACCTCTCGTCCTCAAAAGATTGTTCATAACATTCCTCTGGGTCTCT 511
Query 430 CTTTAATGATGCTTGTGTACAACTCTGTTTTCTTGTTGTTTCTTGTTGTT-TTGATCGTA 488
|||| ||||||||| ||||||| | || |||||| | || |||| | || ||||||
Sbjct 512 CTTT--TGATGCTTGCGTACAACACCGTGTTCTTGATCTT-CTTGGTCACGTTAATCGTA 568
Query 489 GCTATCGATTTACA-AAGCGTGATTCTCGCTGT-TTTCTCGATGGTTGTGATCTTTGTTC 546
||| | |||||||| || |||| || | ||||| ||| ||| |||| |||||||||||||
Sbjct 569 GCTGTTGATTTACAGAA-CGTGGTTTTAGCTGTGTTT-TCGTTGGTAGTGATCTTTGTTC 626
Query 547 TGTTT-TTGGGTGTTCATGTTTATATGACTGCTTGGTGGCATTTAGCTAGTGTTGTCTCT 605
||||| ||| ||||||||||||||||| |||| |||||||||||||||||| ||||||
Sbjct 627 TGTTTCTTGTA-GTTCATGTTTATATGACAGCTTTGTGGCATTTAGCTAGTGTAGTCTCT 685
Query 606 GTTCTTGAACCGATTTACGGGATTGCC-GCGATGAAGAAGAGTTATGAGTTGCTTAAAGG 664
|||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 686 GTTCTTGAACCGATTTACGGT-TTGGCTGCGATGAAGAAGAGTTATGAGTTGCTTAAAGG 744
Query 665 GA-GAACTAATATGGCGTGTTCGATGGTTTTTATGTATCTTGCTCTTTGTGGAATCACTG 723
|| || || |||||| |||||||||||||| || ||||||| || ||||||| ||| ||
Sbjct 745 GAAGA-CTCTTATGGCTTGTTCGATGGTTTTCATCTATCTTGTTCATTGTGGATTCATTG 803
Query 724 CTGGTGTTTTCGGTGGTGTTGTGGTTCATGGAGGTGATGATTTCGGGTTGTTTACGA-AG 782
|||| ||||| || | || ||||||| ||| |||||||||| ||| | ||| || ||
Sbjct 804 CTGGAGTTTTTGGAGCAGTGGTGGTTCGTGGTGGTGATGATTACGGAAT-TTT-CGCTAG 861
Query 783 ATT-GTTGTTGGTGGTTTCTTGGTTGG-GATTCTAGTGATTGTGAATCTAGTGGGGTTGC 840
| | || | |||||| ||||||||||| | |||| ||||| ||||||||| | || |||
Sbjct 862 AATCGTCGCTGGTGGATTCTTGGTTGGTG-TTCTTGTGATAGTGAATCTAATTGGACTGC 920
Query 841 TTGTGCAGAGTGTGTTTTACTATGTTTGTAAGAGTTTTCATCATCAGCCGATTGATAAAT 900
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 921 TTGTGCAGAGTGTGTTTTACTATGTTTGCAAGAGTTTTCATCATCAGGAGATTGATAAAT 980
Query 901 CCGCGTTGCACGATCATCTTGGTGGGTATCTTGGTGATTATGTGCCT-TTAAAGAGCAGC 959
|||| |||||||||||||| ||||||||||| ||||| ||||||||| |||| ||||| |
Sbjct 981 CCGCTTTGCACGATCATCTCGGTGGGTATCTCGGTGAATATGTGCCTCTTAA-GAGCAAC 1039
Query 960 ATTCAGATGGAGAACTTTGA 979
||||| ||||||||||||||
Sbjct 1040 ATTCAAATGGAGAACTTTGA 1059
> AT1G31130.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1);
Has 246 Blast hits to 244 proteins in 29 species:
Archae - 2; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants
- 222; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
| chr1:11114701-11116195 REVERSE LENGTH=1495
Length=1495
Score = 479 bits (259), Expect = 2e-134
Identities = 709/917 (77%), Gaps = 68/917 (7%)
Strand=Plus/Plus
Query 102 CCAAAAACCTTTTACCTCATAACCCTAACCCTAATTTTCCCTCTTTCCTTCGCAATCCTC 161
|||| |||||| |||||||||||||| || | || |||||||| |||||||| ||||||
Sbjct 349 CCAAGAACCTTCTACCTCATAACCCTCTCCTTCATCTTCCCTCTCTCCTTCGCTATCCTC 408
Query 162 GCTCATTCTCTCTTTACCCAACCAATCTTAGCTC-AGCTTGATTCAACTCC--TCCTTCA 218
||||| || ||||| || |||||||||||||| | | || || ||| ||| || ||
Sbjct 409 GCTCACTCACTCTTCACTCAACCAATCTTAGC-CAAACTCGA--CAAATCCGACCCACCA 465
Query 219 GA-TCA-ATC-TAAAACCAATCATGAATGGACCCTTCTTCTTGT-TTATCAATTCA-TCT 273
| ||| ||| | | | |||||| ||||| ||||||| | || || |||| | |
Sbjct 466 AACTCAGATCGT-TCA-C-GTCATGATTGGACTGTTCTTCTAATCTT-CCAGTTCAGT-T 520
Query 274 ATGTT-ATCTTCCTCTTCGCCTTCTCTCTTCTCTCCACAGCCGCCGTCGTCTTCACCGTC 332
| || ||||||||||| ||||||||||||||||| || || || || ||||||||||||
Sbjct 521 A-CTTGATCTTCCTCTTTGCCTTCTCTCTTCTCTCAACCGCTGCTGTTGTCTTCACCGTC 579
Query 333 GCTTCGCTTTACACGGGAAAGCCTGTTTCTTTCTCTTCCACAATGTCAGCGATTCCTC-T 391
||||| |||||||| |||||||||||||||||||| || || | || |||||||| |
Sbjct 580 GCTTCTCTTTACACCGGAAAGCCTGTTTCTTTCTCGTCAACTCTCTCTGCGATTCC-CAA 638
Query 392 AGT-TTTGAAGCGTTTGTTCATTACCTTCCTTTGGGTTTCTTTAATGATGCTTG-TGTAC 449
||| ||| || || | || || || |||||||||||| || | ||||| ||| | ||
Sbjct 639 AGTCTTT-AAACGACTCTTTATAACTTTCCTTTGGGTTGCTCTGTTGATGTTTGCT-TAT 696
Query 450 AACTCTGTTTTCTTGTTGT-TT-CT--TGTTGTTTTGATCGTAGCTATCGATTTACAA-A 504
||| | || ||| | |||| || || || || || |||||||| | ||||| || |
Sbjct 697 AACGCAGTCTTC-T-TTGTCTTCCTCGTGATG-CTT-CTCGTAGCTCTTGATTT-GAATA 751
Query 505 GCGT-GATTCTCGCTGTT-T-TCTCGATGGTTGTGATCTTTGTTCTGT-TTTTGGGTGTT 560
| | | || | ||| || | | || |||| | |||| |||||| | ||| ||||||
Sbjct 752 GTTTAGGTT-TAGCTATTGTAGC-CG-GGGTTATAATCTCTGTTCTATACTTT-GGTGTT 807
Query 561 CATGTTTATATGACTGCTTGGTGGCATTTAGCTAGTGTTGTCTCTGTTCTTGAACCGATT 620
||||||||| | ||||||| |||||||||| |||||| ||||||||||||||||| ||
Sbjct 808 CATGTTTATTTCACTGCTTTATGGCATTTAGGTAGTGTAATCTCTGTTCTTGAACCGGTT 867
Query 621 TACGGGATTGCCGCGATGAAGAAGAG-TTATGAGTTGCTTAAAGGG-AGAACTAATATGG 678
||||| || ||||| ||| |||| || ||||||||||||||||||| || ||||| ||||
Sbjct 868 TACGGAATCGCCGCTATG-AGAAAAGCTTATGAGTTGCTTAAAGGGAAG-ACTAAGATGG 925
Query 679 CGTGT-TCGATGGTTTTTATGTATC-TTGCTCTTTGTGGAATCACTGCTGGTGTTTTCGG 736
| | | | | | ||| | |||| || | || |||||| | | || | |||||| ||
Sbjct 926 C-TATGGGGTTAATCTTTGTTTATCTTTTC-CTCTGTGGATTGATTGGAGTTGTTTTTGG 983
Query 737 TGGTGTTGTGGTTCATGGAGGT--GATGATTTCGG-GTTGTTTACGAAGA-TTGTTGTTG 792
|| ||||||||||||||| ||| || | | | || | ||||| | || || | ||||
Sbjct 984 TGCTGTTGTGGTTCATGGTGGTGGGAAG-TAT-GGAACT-TTTACTAGGACTT-TGGTTG 1039
Query 793 GTGGTTTCTTGGTTGG-GATTCTAGTGATTGTGAATCTAGTGGGGTTGCTT-GTGCAGAG 850
|||| || || ||||| | |||| ||||| || ||||| ||||| ||| || || |||||
Sbjct 1040 GTGGATTGTTAGTTGGTG-TTCTTGTGATGGTTAATCTTGTGGGTTTG-TTGGTTCAGAG 1097
Query 851 TGTGTTTTACTATGTTTGTAAGAGTTTTCATCATCAGCCGATTGATAA-ATCCGCGTTGC 909
|||||||||||||||||||||||||| |||||||||| | |||||||| | |||| |||
Sbjct 1098 TGTGTTTTACTATGTTTGTAAGAGTTATCATCATCAGACTATTGATAAGA-CCGCTTTGT 1156
Query 910 ACGATCATCTTGGTGGGTATCTTGGTGATTATGTGCCT-TTAAAGAGCAGCATTCAGATG 968
| ||||| ||||||||||||||||| |||||||||||| |||| ||||| ||||||| ||
Sbjct 1157 ATGATCAACTTGGTGGGTATCTTGGAGATTATGTGCCTCTTAA-GAGCAACATTCAGTTG 1215
Query 969 GAGAACTTT-GATATTT 984
||| | ||| |||||||
Sbjct 1216 GAGGA-TTTAGATATTT 1231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49480634795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5