BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948592
Length=769
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44910.1 | Symbols: | Toll-Interleukin-Resistance (TIR) dom... 952 0.0
> AT5G44910.1 | Symbols: | Toll-Interleukin-Resistance (TIR) domain
family protein | chr5:18137354-18138235 FORWARD LENGTH=726
Length=726
Score = 952 bits (515), Expect = 0.0
Identities = 660/730 (90%), Gaps = 9/730 (1%)
Strand=Plus/Plus
Query 21 ATGGCAGAGCCAAGACCATACCAACGTCCTCCTCAGGTATTCATCAGTTTCCATGGAGAT 80
|||||||| ||| ||| ||||||||||||||||| |||||||| |||||| ||||| |
Sbjct 1 ATGGCAGAACCACCACCGTACCAACGTCCTCCTCAAGTATTCATTAGTTTCTATGGAAAC 60
Query 81 GAATTACGCGACAATTTCATCAGATATCTTGTGTGGGGATTGAGAGATGAAAGAGTCAAC 140
|||| |||||||||||||||| |||||||||||||||||||||||| || |||||||||
Sbjct 61 GAATCGCGCGACAATTTCATCAAATATCTTGTGTGGGGATTGAGAGACGAGAGAGTCAAC 120
Query 141 GTTTTCATAGACAGAGCAGAAGCAAATAGGAGAGACATAAGAAATATTTCCACAAAGATC 200
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 GTTTTCGTAGACAGAGCAGAAGCAAATAGGAGAGACATACGAAATATTTCCACAAAGATC 180
Query 201 GAGGAGTCTAATATCGCGGTCATAATCTTCTCCAAGAGGTATACAGAGTCAGAGATGTGT 260
|||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 181 GAGGAGTCGAATATCGCGGTCGTCATCTTCTCCAAGAGGTATACAGAGTCAGAGATGTGC 240
Query 261 TTGAACGAGCATCAAAAGATGCACGAGCACGTAAAACAAAGCAACCTCAAGGTGATACCT 320
|||||||||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||
Sbjct 241 TTGAACGAGCTTCAAAAGATGTACGAGCACGTAGAACAAAGCAACCTTAAGGTGATACCT 300
Query 321 GTCTTCTACGATGTGAGCATAAGCGATGTAAAGAACCTCGAGGGTGAATTCGGTAATCAT 380
|||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 301 GTCTTCTATGATGTGAGCATAAGCGGTGTAAAGAACCTCGAGGATGAATTCGGTAATCAT 360
Query 381 TTCGAGGAAATGA-AGATGAAATATGCAAATGATCCACTCAAGATCTTGAATTGGGAGAA 439
||||||||| ||| || |||||| ||||| |||||||||||||||||||| |||||| |
Sbjct 361 TTCGAGGAACTGAGGGA-GAAATACGCAAACGATCCACTCAAGATCTTGAAGTGGGAGGA 419
Query 440 TTCATTGAGTTCAATAGTAGAGAGGACCGGCTTAACCTCAGAAGAACACGGAACAGGTTT 499
|||||||||||||||||||||| |||||||||||||||| ||||| |||||||| |||||
Sbjct 420 TTCATTGAGTTCAATAGTAGAGCGGACCGGCTTAACCTCCGAAGACCACGGAACGGGTTT 479
Query 500 AGGTCTGGTCATGGCAATCGTTAGGGCGGTTAAGAGCGAGCTAACAGACTCTCTAGAAAG 559
|||||| || | ||||||||| | |||||||||||||||||||| || |||| |||||
Sbjct 480 AGGTCTTGTGAGGGCAATCGTCACGGCGGTTAAGAGCGAGCTAATGGA--CTCT-GAAAG 536
Query 560 A-AGAAAGATTA-TGAAAGGACAAGTGTTTGTTTTGGCTTCAGCTGCGGTTTTTATCTTT 617
| | ||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 537 ACA-AAATATTACT-AAAGGACAAGTGTTTGTTTTGGCTTCAGCTGCGGTTTTTATCTGT 594
Query 618 AGTCTCTTTGTAGCTCGTTTACTTTGCACTGATGTGAAAGTTTACAAAGCTGTTAAGTGT 677
|||||| |||||||||||||||| |||||||||||||||||| | |||||||||||||||
Sbjct 595 AGTCTCATTGTAGCTCGTTTACTATGCACTGATGTGAAAGTTAATAAAGCTGTTAAGTGT 654
Query 678 TTACTAGGTTTTCTGGTTTTGGTTGGTGTCTTGCACCAGCTTTATTGTTTACGGAAACAT 737
|||||||| |||| ||||||| |||| |||||||||||||||| ||| |||||| ||
Sbjct 655 TTACTAGGGTTTCCAGTTTTGGCTGGTATCTTGCACCAGCTTTACTGTCTACGGACCCAA 714
Query 738 CCGAACAGAT 747
|| |||||||
Sbjct 715 CCAAACAGAT 724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37374205368
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5