BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948593
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44900.1 | Symbols: | Toll-Interleukin-Resistance (TIR) dom... 1175 0.0
> AT5G44900.1 | Symbols: | Toll-Interleukin-Resistance (TIR) domain
family protein | chr5:18135446-18136438 FORWARD LENGTH=863
Length=863
Score = 1175 bits (636), Expect = 0.0
Identities = 747/801 (93%), Gaps = 6/801 (1%)
Strand=Plus/Plus
Query 4 AAACACCATCT-CCTTCCATGGGCTCCTCCTTCTCCCTCTTTACCGATGTTGGACCGATC 62
||| ||||| | |||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 33 AAAAACCAT-TACCTTCCATGGGCGCCTCCTTCTCCCTCTTTACCGACGTTGGACCGATC 91
Query 63 CCGCCTCAGTATCAAGTGTTCATCAACTTCCGAGGCGAAAAACTTCGTGATGGGTTCCTA 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 CCGCCTCAGTATCAAGTGTTCATCAACTTCCGAGGCGAAAAACTTCGTGATGGGTTCCTA 151
Query 123 GGGTTTCTTGTAGATGCTCTTTTAAAAGAGAATGTCAACGTCTTTATAGATGATCATGAG 182
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 152 GGGTTTCTTGTGGATGCTCTTTTAAAAGAGAATGTCAACGTTTTTATAGATGATCATGAG 211
Query 183 CTTAGAGGGAGAGATCTTGATCATCTCTTCAGTAGGATCGAGGAATCGAGAGTCGCATTG 242
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 CTTAGAGGCAGAGATCTTGATCATCTCTTCAGTAGGATCGAGGAATCGAGAGTCGCATTG 271
Query 243 ACAATCTTCTCCAAGAACTTCACCGAGTCAAGATGGTGCTTAGATGAGCTTGCTAAGATC 302
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 272 ACAATCTTCTCCAAGAACTTCACCAACTCAAGATGGTGCTTAGATGAGCTTGCTAAGATC 331
Query 303 AGAGAATGCGTGGACCAAGGAAGTCTTACAGTGATTCCTATCTTCTTTAAGATGAAAACA 362
| |||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 332 AAAGAATGTGTGGATCAAGAAAGTCTTACAGTGATTCCTATCTTCTTTAAGATGAAAACA 391
Query 363 GACGATGTGAAGAAACTAAAAGGAAAGTTCGGAGACAATTTCCGGGACCTGAAGTCAACG 422
||||||||||||||||| || || || || |||||||| |||||||||||||||| ||||
Sbjct 392 GACGATGTGAAGAAACTGAAGGGGAATTTTGGAGACAACTTCCGGGACCTGAAGTTAACG 451
Query 423 CATCGCGGCGAGCCAGAAAATTTTCGGAGATGGAAGGAAGCTTTGA-TTTTTGTTTCAGA 481
|||||||||||||| |||| || |||||||||||| || ||| | | | | |||||| |
Sbjct 452 CATCGCGGCGAGCCTGAAACTTATCGGAGATGGAAAGATGCTAT-ACTGTATGTTTC-TA 509
Query 482 A-AAAGCTGGCTTGTCTTCATCACGATACAGTCGTCAAAATGATTTGGTGAGCACAATCG 540
| ||| ||||||||||||| |||||||||||||| || ||||||||||| | ||||||||
Sbjct 510 AGAAAACTGGCTTGTCTTCGTCACGATACAGTCGCCAGAATGATTTGGTCAACACAATCG 569
Query 541 TTGAGGAGGTTAAGAAAGTTTTAAACGATATCGCCGAGATGGAACGACAAATCGTTGACG 600
| |||||||||||||||||| ||||||||||||||||||| ||||||||||| | ||| |
Sbjct 570 TCGAGGAGGTTAAGAAAGTTCTAAACGATATCGCCGAGATCGAACGACAAATTGCTGAAG 629
Query 601 TGAAACGCAAGAATTTGGCGGCAAGAACAGATGAATTGATTAGATTTGTTGTCCGTTTCC 660
||| ||||| |||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 630 AGAAGCGCAACCATTTGGCGGCAAGAACAGATGAATTGATTAGACTTGTTGTCCGGTTCC 689
Query 661 TAAGTCTGtttcttctttttacaatagtttttggtccttatgttttaggccttctcactt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 TAAGTCTGTTTCTTCTTTTTACAATAGTTTTTGGTCCTTATGTTTTAGGCCTTCTCACTT 749
Query 721 ttttctcttttcttGTGGGTCGGTTGATAATCAATCGAGCTGTGGAAAGTGAGTGGTGAA 780
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 750 TTTTCTCTTTTCTTGTGGGTCGTTTGATAATCAATCGAGCTGTGGAAAGTGAGTGGTGAA 809
Query 781 TGGTTACGTTTGCGTTTCTAT 801
|||| ||||||||||||||||
Sbjct 810 TGGTAACGTTTGCGTTTCTAT 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5