BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948597
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44840.1 | Symbols: | Pectin lyase-like superfamily protein... 1757 0.0
AT5G44830.1 | Symbols: | Pectin lyase-like superfamily protein... 1519 0.0
> AT5G44840.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:18104851-18107127 REVERSE LENGTH=1146
Length=1146
Score = 1757 bits (951), Expect = 0.0
Identities = 1084/1149 (94%), Gaps = 6/1149 (1%)
Strand=Plus/Plus
Query 21 ATGGAAATCATACTACGTGGTGTATTCTTCTTGACTTTACTGCATTCTGTTCTTGTAAAC 80
||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct 1 ATGGAAATCATACTACGTGGTGTGTTCTTGTTGACTTTACTGCATTCTATTCTTGTAAAC 60
Query 81 GGCCAAATCTATGATGTGCTTAAATTTGGTGCCAAGGGAAACGGTATTACCGATGATTCG 140
||||||||||||||||||||| ||||||||||| | ||||| |||||||||||||||||
Sbjct 61 GGCCAAATCTATGATGTGCTTGAATTTGGTGCCGATGGAAATGGTATTACCGATGATTCA 120
Query 141 AAGGCTTTTGTGACAGCATGGAAAGCTATGTGTGGTAGTGGTGGGAATTCAAAAACATTC 200
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGGCTTTTGTGAAAGCATGGAGCGCTATGTGTGGTAGTGGTGGGAATTCAAAAACATTC 180
Query 201 CTTATTCCTTCAAACAAAACATTCTTACTACAACCTCTTA-TGTTCCAAGGCCCTTGTAA 259
||||||| |||||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 181 ATTATTCCATCAAACAAAACATTTTTACTACAACCTCTTACT-TTCCAAGGCCCTTGTAA 239
Query 260 ATCTCCTTCCGTACAAGTTAAGTTTGACGGAAAGATTGTTGCGCCTATCAACAAAGCAGC 319
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 240 ATCTCCTTCCGTACAAGTTAAGTTTGACGGAAAGATTGTTGCACCTATAAATAAAGCAGC 299
Query 320 TTGGTCGGAAAATAAGCTATTTAGATGGGTTAGTTTTAAGGAAATAATCGGTTTAACAGT 379
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTGGTCGGACTATAAGTTATTTAGATGGGTTAGTTTTAAGGAAATAATCGGTTTAACAGT 359
Query 380 CACTGGTTCGGGAACAATTCATGGACGTGGTTCGTCTTTTTGGAAGCAATTGCATTTTAA 439
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 360 CAATGGTTCGGGAACAATTCATGGACGTGGCTCGTCTTTTTGGAAGCAATTGCATTTTCA 419
Query 440 AAGTTGCAATGATCTCAAGATAAGTGGAATAACCTCATTCAACAGTCCAAGAAACCATAT 499
||| ||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 420 AAGATGCAACGATCTCATGATAACTGGAATAACCTCATTCAACAGTCCAAAAAACCATAT 479
Query 500 ATCGATTAGCGAATGCAAAAGAGTTAAAATTACGAAGATAAAACTCGTAGCACCCCACGA 559
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 ATCGATTAGCGAATGCAAAAGAGTTAAAATAACGAAGATAAAACTCGTAGCACCCCACGA 539
Query 560 TAGTCCTAACACTGATGGAATTGATATCTCACG-ATCAAGTGATGTCGATATATACGACA 618
|||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 540 TAGTCCTAACACTGATGGAATTAATATCTCA-GAATCAAGTGATGTCGATATATACGACA 598
Query 619 CAATTATTGGAACTGGCGATGATTGTGTAGCTATAAACAACGGAAGTATGAATATCAATA 678
|| ||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 599 CAGTTATTGGAACTGGAGATGATTGTGTAGCTATTAACAGCGGAAGTATGAATATCAATA 658
Query 679 TCACAAGGATGAATTGTGGACCTGGCCATGGAATAAGTGTGGGAAGTCTAGGAAGAGATG 738
|| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 659 TCGCAAGGATGAATTGTGGACCTGGTCATGGAATAAGTGTGGGAAGTGTAGGAAGAGATG 718
Query 739 GAGAAGAATCTATAGTTGAGAATGTCCAAGTGACTAATTGCACTTTCTTTAGGACGGATA 798
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 719 GAGAAGAATCTATAGTTGAGAATGTCCAAGTAACTAATTGCACTTTCATTAGGACGGATA 778
Query 799 ATGGAGCTAGGATTAAGACATGGCCGAATGGAAAGGGATACGCAAAAAATATACTTTTTC 858
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATGGAGCTAGAATTAAGACATGGCCGAATGGAAAGGGATACGCAAAAAATATACTTTTT- 837
Query 859 AAG-GCCTTACGTTCAGAGAAACCAAAAATCCAATTATAATCGACCAAAACTATGTCGAT 917
||| | ||||| || ||||||||||||||||| || |||||||||||||| ||||| |||
Sbjct 838 AAGAGTCTTACATTTAGAGAAACCAAAAATCCGATAATAATCGACCAAAATTATGTTGAT 897
Query 918 AAGGGTCGCCTAGACGTGGAGGAATCAGCAGTGGCAATTAGTAACGTGACATTCACCGAT 977
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 898 AAGGGTCGCCTAGACGTGGAGGAATCAGCAGTGGCAATCAGTAACGTGACATTTACAGAT 957
Query 978 ATTCGTGGAACGTCACAAGTCGATGAGATTATAAAGATAGATTGCAGCAAAGTCACATAT 1037
| || ||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CTCCGAGGAACATCAAAACTCGATGAGATTATAAAGATAGATTGCAGCAAAGTCACATAT 1017
Query 1038 TGCAAAGACATTGTTCTTGATAAAATCGATATTGCTACGGTCGATGGAAATAAGCCAGTT 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1018 TGCAAAGACATTGTTCTTGATAAAATCGATATTGCTACGGTCGATGGAAATAAGCCAATC 1077
Query 1098 GTTGAATGCAGTAACGTGTATGGAAAGTCTATCAATGCTAACGAGGCCAATGGTTGTTTC 1157
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GTTGAATGCAGTAACGTATATGGAAAGTCTATCAATGCTAACGAGGCCAATGGTTGTTTC 1137
Query 1158 AAAACATAG 1166
|||||||||
Sbjct 1138 AAAACATAG 1146
> AT5G44830.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:18100128-18101885 REVERSE LENGTH=999
Length=999
Score = 1519 bits (822), Expect = 0.0
Identities = 936/992 (94%), Gaps = 4/992 (0%)
Strand=Plus/Plus
Query 168 ATGTGTGGTAGTGGTGGGAATTCAAAAACATTCCTTATTCCTTCAAACAAAACATTCTTA 227
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGTGTGGTAGTGGTGGGAATTCAAAAACATTCCTTATTCCTTCAAACCAAACATTCTTA 60
Query 228 CTACAACCTCTTA-TGTTCCAAGGCCCTTGTAAATCTCCTTCCGTACAAGTTAAGTTTGA 286
||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 CTACAACCTCTTACT-TTCCAAGGCCCTTGTAAATCTCCTTCAGTACAAGTTAAGTTTGA 119
Query 287 CGGAAAGATTGTTGCGCCTATCAACAAAGCAGCTTGGTCGGAAAATAAGCTATTTAGATG 346
||||||||||||||| ||||| |||||||||||||||||||| | |||| ||||||||||
Sbjct 120 CGGAAAGATTGTTGCACCTATTAACAAAGCAGCTTGGTCGGAGAGTAAGTTATTTAGATG 179
Query 347 GGTTAGTTTTAAGGAAATAATCGGTTTAACAGTCACTGGTTCGGGAACAATTCATGGACG 406
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 180 GGTTAGTTTTAAGGAAATAATCGGTTTAACAGTCAATGGTTCGGGAACAATTCATGGACG 239
Query 407 TGGTTCGTCTTTTTGGAAGCAATTGCATTTTAAAAGTTGCAATGATCTCAAGATAAGTGG 466
||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||||| |||
Sbjct 240 TGGCTCGTCTTTTTGGAAGCAATTGCATTTTCAAAGATGCAACGATCTCAAGATAATTGG 299
Query 467 AATAACCTCATTCAACAGTCCAAGAAACCATATATCGATTAGCGAATGCAAAAGAGTTAA 526
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 300 AATAACCTCATTCAACAGTCCAAGAAACCATATATCAATTAGCGAATGCAAAAGAGTTCA 359
Query 527 AATTACGAAGATAAAACTCGTAGCACCCCACGATAGTCCTAACACTGATGGAATTGATAT 586
| | |||||||||||||||||||||||| | |||||||||||||||||||| ||| ||||
Sbjct 360 ACTAACGAAGATAAAACTCGTAGCACCCGAGGATAGTCCTAACACTGATGGGATTAATAT 419
Query 587 CTCACGATCAAGTGATGTCGATATATACGACACAATTATTGGAACTGGCGATGATTGTGT 646
||| ||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||
Sbjct 420 ATCAGGATCAAGTGATGTCGATGTATACGACACATTTATTGGAACTGGAGATGATTGTGT 479
Query 647 AGCTATAAACAACGGAAGTATGAATATCAATATCACAAGGATGAATTGTGGACCTGGCCA 706
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 AGCTATAAACAACGGAAGTGTGAATATCAATATTACAAGGATGAATTGTGGACCTGGCCA 539
Query 707 TGGAATAAGTGTGGGAAGTCTAGGAAGAGATGGAGAAGAATCTATAGTTGAGAATGTCCA 766
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGGAATAAGTGTGGGGAGCCTAGGAAGAGATGGAGAAGAATCTATAGTTGAGAATGTCCA 599
Query 767 AGTGACTAATTGCACTTTCTTTAGGACGGATAATGGAGCTAGGATTAAGACATGGCCGAA 826
||| |||||||| |||||||||||||| |||||||||| ||| |||||||||||||||||
Sbjct 600 AGTAACTAATTGTACTTTCTTTAGGACAGATAATGGAGTTAGAATTAAGACATGGCCGAA 659
Query 827 TGGAAAGGGATACGCAAAAAATATACTTTTTCAAGGCCTTACGTTCAGAGAAACCAAAAA 886
|||||| |||||||||| ||||||||||||| ||| |||||| ||||||||| |||||||
Sbjct 660 TGGAAAAGGATACGCAAGAAATATACTTTTTAAAGACCTTACATTCAGAGAATCCAAAAA 719
Query 887 TCCAATTATAATCGACCAAAACTATGTCGATAAGGGTCGCCTAGACGTGGAGGAATCAGC 946
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCCGATTATAATCGACCAAAATTATGTCGATAAGGGTCGCCTAGACGTGGAGGAATCAGC 779
Query 947 AGTGGCAATTAGTAACGTGACATTCACCGATATTCGTGGAACGTCACAA-GTCGATGAGA 1005
||||||||||||||| ||||||||||| ||||||||||||||||||||| | | ||||||
Sbjct 780 AGTGGCAATTAGTAATGTGACATTCACAGATATTCGTGGAACGTCACAACG-CAATGAGA 838
Query 1006 TTATAAAGATAGATTGCAGCAAAGTCACATATTGCAAAGACATTGTTCTTGATAAAATCG 1065
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 839 TTATAAAGATAGATTGCAGCGAAGTCACATATTGCAAAGACATTGTTCTTGATAAAATTG 898
Query 1066 ATATTGCTACGGTCGATGGAAATAAGCCAGTTGTTGAATGCAGTAACGTGTATGGAAAGT 1125
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 899 ATATTGCTACGGTCGATGGAAATAAACCAGTTGTTGAATGCAGTAACGTGTATGGAAAGT 958
Query 1126 CTATCAATGCTAACGAGGCCAATGGTTGTTTC 1157
|||||||| ||||||| || ||||||||||||
Sbjct 959 CTATCAATACTAACGATGCTAATGGTTGTTTC 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58232632200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5