BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948624
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44680.1 | Symbols: | DNA glycosylase superfamily protein |... 1744 0.0
AT3G12710.1 | Symbols: | DNA glycosylase superfamily protein |... 143 4e-33
> AT5G44680.1 | Symbols: | DNA glycosylase superfamily protein
| chr5:18024215-18025991 REVERSE LENGTH=1406
Length=1406
Score = 1744 bits (944), Expect = 0.0
Identities = 1056/1109 (95%), Gaps = 11/1109 (1%)
Strand=Plus/Plus
Query 1 CAAAGATAGACAG---aaaaaaaaTGTGTTCCTCAAAATTAAAGAACCTGACCCAAGAAA 57
||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||
Sbjct 76 CAAAGCTAGACAGAAAAAAAAAAATGTGTTCCTCAAAATTAAAAAATCTGACCCAAGAAA 135
Query 58 ACATTTCCCAGATCAACGGTCGTCCGGTTCTTCAACCGAAATCGAACCAAGTTCCAACAT 117
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 136 ACATTTCTCAGATCAACGGCCGTCCGGTTCTTCAACCGAAGTCGAACCAAGTTCCGACAT 195
Query 118 TAGACCGACGTAACTCACTCAAGAAATCTCCTCCTAAGCCTTTGAATCCAATTGCATCAT 177
||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||
Sbjct 196 TAGACCGACGTAACTCACTAAAAAAATCGCCTCCTAAGCCTTTGAATCCAATTG---CAT 252
Query 178 CAAAGATACCATCACCAAGACCAATTTCTCTAAACTCTCCTCCTTTGTCTCCCAACTCAA 237
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 253 CAAAGATACCCTCACCAAGACCAATTTCTCTAATCTCTCCTCCTTTGTCTCCCAACACAA 312
Query 238 AATCCTTAAGACAACCGCCCGGTTCTTGCAAGGAGCTACTTAGGTCTAGCTCTGA-AAAA 296
||||||||||| ||||| |||||||||||||||| || ||||||||||||||| | ||||
Sbjct 313 AATCCTTAAGAAAACCGGCCGGTTCTTGCAAGGAACTTCTTAGGTCTAGCTCT-ACAAAA 371
Query 297 TC-AAAGCCAGTGAAATCACCAGAGAATAGTGATGGTGGCTACAAAGAAGTTATGTCTAT 355
|| ||| ||||||| |||||||||||| |||||||||||||||||||| |||||| ||||
Sbjct 372 TCGAAA-CCAGTGATATCACCAGAGAACAGTGATGGTGGCTACAAAGAGGTTATGCCTAT 430
Query 356 GGTGATTGTTCAAAAACAACCTGGAAGTATAGCAGCTGCaagaagagaagaggttgcaat 415
||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 431 GGTGATTGTTCAAAAGCAGCCTGGAAGTATAGCAGCTGCCAGAAGAGAAGAGGTTGCAAT 490
Query 416 gaaacaagaagagagaaagaagaaaaTTTCTCATTACGGTAGAATCAAATCCGTAAAATC 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 GAAACAAGAAGAGAGAAAGAAGAAAATTTCTCATTACGGTAGAATCAAATCCGTAAAATC 550
Query 476 GAACGAAAAGAACTTAAATGTTGAGCATGAGAAGAAAAAGAGGTGCAGTTTCATCACTAC 535
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 551 GAATGAAAAGAACTTAAATGTTGAGCATGAGAAGAAGAAGAGATGCAGTTTCATCACTAC 610
Query 536 AAGTACAGATCCAATATATGTCGCTTACCATGACAAAGAATGGGGAGTTCCAGTTCATGA 595
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 AAGTTCAGATCCAATATATGTCGCTTACCATGACAAAGAATGGGGAGTTCCAGTTCATGA 670
Query 596 TGACAAGCTACTATTTGAGCTTCTGGTGTTAACCGGTGCTCAGGTCGGATCAGATTGGAC 655
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 671 TGACAATCTACTATTTGAGCTTCTGGTGTTAACCGGAGCTCAGGTCGGATCAGATTGGAC 730
Query 656 TTCGGTTTTAAAGAAAAGAAACACTTTTAGAGAGGCTTTCTCTGGTTTCGAAGCAGAGTT 715
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TTCGGTTTTAAAGAGAAGAAACACTTTTAGAGAGGCTTTCTCTGGTTTCGAAGCAGAGTT 790
Query 716 GGTCGCAGACTTCAACGAGAAGAAGATACACTCAATAGTCAACGACTATGGCATTAACCT 775
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 791 GGTCGCAGACTTCAACGAGAAGAAGATACAATCAATAGTCAACGACTATGGCATTAACCT 850
Query 776 TAGCCAAGTCCTTGCAATTGTTGACAACTCTAAACAAATTCTCAAGGTGAAAAGAGATTT 835
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 851 TAGCCAAGTCCTTGCAGTTGTTGACAACGCTAAACAAATTCTCAAGGTGAAAAGAGATTT 910
Query 836 TGGGTCATTCAACAAATACATTTGGGGGTTTATGAAATACAAACCGGTCACCACAAAATA 895
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 911 GGGGTCATTCAACAAATACATTTGGGGGTTTATGAAACACAAACCGGTCACCACAAAATA 970
Query 896 CACATCATGCCAAAAGATACCGGTTAAGACATCGAAATCGGAGACTATAAGCAAAGACAT 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 CACATCATGCCAAAAGATACCGGTTAAGACATCGAAATCGGAGACTATAAGCAAAGACAT 1030
Query 956 GGTTCGTCGTGGGTTTAGATTCGTTGGTCCAACGGTTCTACATTCGTTAATGCAAGCCGC 1015
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1031 GGTTCGTCGTGGGTTTAGATTCGTTGGTCCGACGGTTATACATTCGTTAATGCAAGCCGC 1090
Query 1016 CGGTTTAACCAACGACCACTTGATCACATGTCCAAGGCATCTTGAGTGTACGGCCATGGC 1075
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1091 CGGTTTAACCAACGACCACTTGATCACATGTCCGAGGCATCTCGAGTGTACGGCCATGGC 1150
Query 1076 GGCTTTATAGGCAAAAAGATTATTGTTGT 1104
|||||||||||||||| ||| || |||||
Sbjct 1151 GGCTTTATAGGCAAAAGGATCAT-GTTGT 1178
> AT3G12710.1 | Symbols: | DNA glycosylase superfamily protein
| chr3:4040324-4041982 REVERSE LENGTH=1341
Length=1341
Score = 143 bits (77), Expect = 4e-33
Identities = 169/213 (79%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 834 TTTGGGTCATTCA-ACAAATACATTTGGGGGTTTATGAAATACAAACCGGTCACCACAAA 892
|||| |||||| | | |||||| ||||||| ||| |||| ||||||| || |||| ||
Sbjct 839 TTTGTGTCATT-AGAGAAATACCTTTGGGGATTTGTGAACCACAAACCAATCTCCACGAA 897
Query 893 ATACACATCATGC-CAAAAGATACCGGTTAAGACATCGAAATCGGAGA-CTATAAGCAAA 950
|||| | | || || ||||| ||||| ||||||||||| ||||||| | || ||||||
Sbjct 898 CTACA-AGCTTGGACACAAGATTCCGGTCAAGACATCGAAGTCGGAGAGC-ATCAGCAAA 955
Query 951 GACATGGTTCGTCGTGGGTTTAGATTCGTTGGTCCAACGGTTCTACATTCGTTAATGCAA 1010
|||||||||||||| || || | ||||| ||||| || || | || || || ||||||
Sbjct 956 GACATGGTTCGTCGAGGCTTCCGGTTCGTGGGTCCCACTGTGGTTCACTCATTCATGCAA 1015
Query 1011 GCCGCCGGT-TTAACCAACGACCACTTGATCAC 1042
||||| ||| ||| | |||||||||||||||||
Sbjct 1016 GCCGCTGGTCTTA-CAAACGACCACTTGATCAC 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54166388055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5