BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948629

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G33330.1 | Symbols:  | Class I peptide chain release factor ...   492    1e-138


> AT1G33330.1 | Symbols:  | Class I peptide chain release factor 
| chr1:12084951-12086528 FORWARD LENGTH=1081
Length=1081

 Score =  492 bits (266),  Expect = 1e-138
 Identities = 344/381 (90%), Gaps = 7/381 (2%)
 Strand=Plus/Plus

Query  4    GCGGTGGTTCTTCTGCCATGGCGATCATGGCCGTTGCCGCTCTCTTTCACGCCCGCTTCC  63
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GCGGTGGTTCTTCTGCCATGGCGATCATGGCCGTTGCCGCTCTCTTTCACGCCCGCTTCC  60

Query  64   CTCTTCTCCTCCGTCACAGTGTCCCGTTCAC-GTTTTCTC-TGTCTTCTGTCATATACTA  121
            ||||||||||||||| |||| ||||||| || ||   ||| |  ||||||| || ||| |
Sbjct  61   CTCTTCTCCTCCGTCGCAGTATCCCGTT-ACTGTCGGCTCCTA-CTTCTGTTATTTACAA  118

Query  122  TCGCAGGACTGTTCCATCCGATGGACTCAGTACCCGATTATGCTCGATTCTCCGTTATTC  181
            || ||| ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  119  TCACAGAACTCTTCTATCCGATGGACTCAGTACTCGATTATGCTCGATTCTCCGTTATTC  178

Query  182  ATCGCCCGACGGCGGCGGCGGCGGAGGAAGTAGTAGTGGCGATTCCGGTAGCGTTAACGA  241
            |||| | ||||||| |  |||||||  | ||||  ||||||||| ||||| || ||||||
Sbjct  179  ATCGTCTGACGGCGTCAACGGCGGA--A-GTAGCGGTGGCGATTTCGGTAACGATAACGA  235

Query  242  TTCCGTTAGCGTTGTTGCAGATGTTCAGAGTCCTAATTACTTGAAATTCACCGATGATGA  301
            ||||||||| |||||| | ||||||||||||||||||||||| |||||||||||||| ||
Sbjct  236  TTCCGTTAGTGTTGTTTCGGATGTTCAGAGTCCTAATTACTTAAAATTCACCGATGAAGA  295

Query  302  ATTGATGAAGCAATGTAGATTAGAGACATTTAGAGTTTCAGGACCTGGAGGAAAACACCG  361
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  296  ATTGATGAAGCAATGTAGATTAGAGACATTTAGAGTTTCAGGACCTGGAGGACAACACCG  355

Query  362  GAACAAGCGTGACTCCGCCGT  382
            |||||||||||||||||||||
Sbjct  356  GAACAAGCGTGACTCCGCCGT  376


 Score = 93.5 bits (50),  Expect = 2e-18
 Identities = 52/53 (98%), Gaps = 0/53 (0%)
 Strand=Plus/Plus

Query  380  CGTTCACAGCACAAGAACCGTGCTTCTGCTCTGAACCGTCTTCGTACGCTCCT  432
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  426  CGTTCACAGCACAAGAACCGTGCTTCTGCTCTAAACCGTCTTCGTACGCTCCT  478



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20559509341


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5