BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg948640 Length=527 Score E Sequences producing significant alignments: (Bits) Value AT5G44610.1 | Symbols: MAP18, PCAP2 | microtubule-associated pr... 544 4e-154 > AT5G44610.1 | Symbols: MAP18, PCAP2 | microtubule-associated protein 18 | chr5:17993565-17994676 REVERSE LENGTH=749 Length=749 Score = 544 bits (294), Expect = 4e-154 Identities = 489/571 (86%), Gaps = 62/571 (11%) Strand=Plus/Plus Query 17 aaaaGATGGGTTATTGGAAATCTAAGGTTGTTCCAAGGATGAAGAGATTGTTCGAGAAGA 76 ||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||| Sbjct 85 AAAAGATGGGTTATTGGAAGTCGAAGGTTGTTCCAAGGATGAAGAAATTGTTCGAGAAGA 144 Query 77 GTCCAGCAAAAAAGGAAGTTGTTGAGGAGGAGAAGCCACGAGAGGTGGAAGTTGTGGAGG 136 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 145 GTCCAGCAAAAAAGGAAGTTGTTGAGGAGGAGAAGCCACGAGAGGTGGAAGTCGTGGAGG 204 Query 137 AGGTCGTCGTGAAAACCGAAGAACCGGCCAAGGTAGAAGAAACCAAACCGGAGG--A-AA 193 ||||||||||||||||||||||||||||||||| || |||||| |||||||||| | || Sbjct 205 AGGTCGTCGTGAAAACCGAAGAACCGGCCAAGGAAGGAGAAACTAAACCGGAGGAAATAA 264 Query 194 TTGCAACCGgagagaaagagatagaaatagttgaagagaagaaagaagagGCTAAACCGG 253 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 TTGCAACCGGCGAGAAAGAGATAGAAATAGTTGAAGAGAAGAAAGAAGAGGCTAAACCGG 324 Query 254 TGGAGGTTCCGGTCC-Cggag--gag-a--agaagactgc--gccggtggaagag-a-a- 302 ||||||||||||||| || || | | | |||||| || |||| | |||||| | | Sbjct 325 TGGAGGTTCCGGTCCTCGCAGCTGCGGAGGAGAAGAA-GCCAGCCG-TAGAAGAGGAGAA 382 Query 303 gaagccagct--g-tggaagag--ga-g--a-------a-ga--ag------cctgccgt 338 |||| | || | |||||||| || | | | || || |||||||| Sbjct 383 GAAGACGGCGCCGGTGGAAGAGAAGAAGCCAGCTGTGGAAGAGGAGAAGAAGCCTGCCGT 442 Query 339 ggaagagaagaaacctgtggtggaggagaaaaaagaagTTGTTGCCGCGGTTCCGGTGGC 398 |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 443 GGAAGAGAAGAAACCTGTGGAGGAGGAGAAAAAAGAAGTTGTTGCCGCTGTTCCGGTGGC 502 Query 399 TGAAACTCCTTCGACCAAGGCTCCCGAAACTCCCGTGGTTGAAACTCCGGCCAAGGCTGC 458 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | Sbjct 503 TGAAACTCCTTCGACTAAGGCTCCCGAAACTCCGGTGGTTGAAACTCCGGCCAAGGCTCC 562 Query 459 GGAAACTCCGG----------A-A------TT---TT--CTTCATGGTACATTTTTCTaa 496 ||||||||||| | | || || ||||||||||||||||||||| Sbjct 563 GGAAACTCCGGCGGCTGCGCCACAAAAGGCTTGAATTTTCTTCATGGTACATTTTTCTAA 622 Query 497 aaaaaTATTGATTGTCTTTGTGTGGATAATT 527 ||||||||||||||||||||||||||||||| Sbjct 623 AAAAATATTGATTGTCTTTGTGTGGATAATT 653 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25217541794 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5