BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948640

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G44610.1 | Symbols: MAP18, PCAP2 | microtubule-associated pr...   544    4e-154


> AT5G44610.1 | Symbols: MAP18, PCAP2 | microtubule-associated 
protein 18 | chr5:17993565-17994676 REVERSE LENGTH=749
Length=749

 Score =  544 bits (294),  Expect = 4e-154
 Identities = 489/571 (86%), Gaps = 62/571 (11%)
 Strand=Plus/Plus

Query  17   aaaaGATGGGTTATTGGAAATCTAAGGTTGTTCCAAGGATGAAGAGATTGTTCGAGAAGA  76
            ||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||
Sbjct  85   AAAAGATGGGTTATTGGAAGTCGAAGGTTGTTCCAAGGATGAAGAAATTGTTCGAGAAGA  144

Query  77   GTCCAGCAAAAAAGGAAGTTGTTGAGGAGGAGAAGCCACGAGAGGTGGAAGTTGTGGAGG  136
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  145  GTCCAGCAAAAAAGGAAGTTGTTGAGGAGGAGAAGCCACGAGAGGTGGAAGTCGTGGAGG  204

Query  137  AGGTCGTCGTGAAAACCGAAGAACCGGCCAAGGTAGAAGAAACCAAACCGGAGG--A-AA  193
            ||||||||||||||||||||||||||||||||| || |||||| ||||||||||  | ||
Sbjct  205  AGGTCGTCGTGAAAACCGAAGAACCGGCCAAGGAAGGAGAAACTAAACCGGAGGAAATAA  264

Query  194  TTGCAACCGgagagaaagagatagaaatagttgaagagaagaaagaagagGCTAAACCGG  253
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  265  TTGCAACCGGCGAGAAAGAGATAGAAATAGTTGAAGAGAAGAAAGAAGAGGCTAAACCGG  324

Query  254  TGGAGGTTCCGGTCC-Cggag--gag-a--agaagactgc--gccggtggaagag-a-a-  302
            ||||||||||||||| || ||  | | |  ||||||  ||  |||| | |||||| | | 
Sbjct  325  TGGAGGTTCCGGTCCTCGCAGCTGCGGAGGAGAAGAA-GCCAGCCG-TAGAAGAGGAGAA  382

Query  303  gaagccagct--g-tggaagag--ga-g--a-------a-ga--ag------cctgccgt  338
            |||| | ||   | ||||||||  || |  |       | ||  ||      ||||||||
Sbjct  383  GAAGACGGCGCCGGTGGAAGAGAAGAAGCCAGCTGTGGAAGAGGAGAAGAAGCCTGCCGT  442

Query  339  ggaagagaagaaacctgtggtggaggagaaaaaagaagTTGTTGCCGCGGTTCCGGTGGC  398
            |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct  443  GGAAGAGAAGAAACCTGTGGAGGAGGAGAAAAAAGAAGTTGTTGCCGCTGTTCCGGTGGC  502

Query  399  TGAAACTCCTTCGACCAAGGCTCCCGAAACTCCCGTGGTTGAAACTCCGGCCAAGGCTGC  458
            ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
Sbjct  503  TGAAACTCCTTCGACTAAGGCTCCCGAAACTCCGGTGGTTGAAACTCCGGCCAAGGCTCC  562

Query  459  GGAAACTCCGG----------A-A------TT---TT--CTTCATGGTACATTTTTCTaa  496
            |||||||||||          | |      ||   ||  |||||||||||||||||||||
Sbjct  563  GGAAACTCCGGCGGCTGCGCCACAAAAGGCTTGAATTTTCTTCATGGTACATTTTTCTAA  622

Query  497  aaaaaTATTGATTGTCTTTGTGTGGATAATT  527
            |||||||||||||||||||||||||||||||
Sbjct  623  AAAAATATTGATTGTCTTTGTGTGGATAATT  653



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25217541794


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5