BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948641
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44600.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1570 0.0
AT5G44590.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 800 0.0
> AT5G44600.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:17989861-17991672
FORWARD LENGTH=1161
Length=1161
Score = 1570 bits (850), Expect = 0.0
Identities = 976/1036 (94%), Gaps = 12/1036 (1%)
Strand=Plus/Plus
Query 15 aaaaaaaTGGCAGCTTTGAGTTCTTCCA--TGACCATCTCATCGCTACATTCACTTTCTC 72
|||||||||||||||||| |||| | || ||||||||||||| ||||||||||||||||
Sbjct 1 AAAAAAATGGCAGCTTTGTGTTC-T-CATTTGACCATCTCATCTCTACATTCACTTTCTC 58
Query 73 GATACGAAAGTTGCTTCCTTTTATCCCAATTTTCAAAACCCTTGTTCATAAACCCATCTC 132
||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||
Sbjct 59 GATACGAAAATTGCTTCCTTTCATCCCAATTTTCAAAACCCTTGTTCCTAAACCAATCTC 118
Query 133 AGAACAAACCCAGATTCTCAATTTCGTTTTGCCTCAAGCAAAGTGATCGTGATGAGAGGC 192
||||||||||||||||||||||||| ||||| |||||||||||| ||| ||| |||||||
Sbjct 119 AGAACAAACCCAGATTCTCAATTTCATTTTGTCTCAAGCAAAGTAATCATGACGAGAGGC 178
Query 193 AAATTCAACAAGAATCTAG-CAAAGATGACGACGAAGAAGAAGAAGAGTATTGGGTTGTT 251
||||||||||||| ||| | |||||| || || |||||||||||||||||||||||||||
Sbjct 179 AAATTCAACAAGACTCT-GCCAAAGAAGAAGAAGAAGAAGAAGAAGAGTATTGGGTTGTT 237
Query 252 ACAGCCGTGAGAAGCAGATACAATGAGATTGTTATAGTGGAGACTGTTTCTTCCAGATAT 311
||||| || |||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 238 ACAGCAGTAAGAAGCAGATACAATGAGATTGTTATAGTGGATACTGCTTCTTCCAGATAT 297
Query 312 CTTCTTCTTGATTCAACTAAGAATGTGCATAGTGTTATCAATAAAGGAGGTCAAAATTGG 371
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 298 CTTCTCCTTGATTCAACTAAGAATGTGCATAGTGTTATCAATAAAGGAGGCCAAAATTGG 357
Query 372 ACTGGATCTTATTGGGATGAGTTTGCGAGTTTGCCGCCTATTATCCCTAATGGTCCCATT 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 358 ACTGGATCTTATTGGGATGAGTTTGCGAGTTTGCCGCCTATTATCCCTAATGGTCCCGTT 417
Query 432 GCAATCTACGGCTTGGGTGGTGGAACAGCTGCAAGATTGATGCTTGAGTTGTGGCCTACA 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GCAATCTACGGCTTGGGTGGTGGAACAGCTGCAAGATTGATGCTTGAGTTGTGGCCTACA 477
Query 492 ATGCAGCTTGAAGGTTGGGAAATTGATGAAATTTTGATTGAGAAAGCAAGAGACTATCTC 551
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ATGCAGCTGGAAGGTTGGGAAATTGATGAAATTTTGATTGAGAAAGCAAGAGACTATCTC 537
Query 552 GGGTTGTCTGAGCTAGAGAAACCAACATCGAAAGGCGGTAGACTTTGTGTTCATGTAGAT 611
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 538 GGGTTGTCTGAGCTAGAGAAACCGACATCGAAAGGCGGTAGACTTTGTGTTCATGTAGAT 597
Query 612 GATGCTCTCTCTCCTTCTCAAGATGTTTCAGGAAGATATGCTGGGATCATTGTTGATTTG 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GATGCTCTCTCTCCTTCTCAAGATGTTTCAGGAAGATATGCTGGGATCATTGTTGATTTG 657
Query 672 TTTGCTGATGGAAAGGTCTTAGATCAGCTGCAACAGGTCCCTATTTGGTTGGAGCTTGCT 731
||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||| |||
Sbjct 658 TTTGCTGATGGGAAGGTCTTAGATCAGCTGCAAGAGGTCCCGATTTGGTTAGAGCTGGCT 717
Query 732 AGTAGGCTGATGCCTAACGGTCGCATTATGGTGAATTGTGCGGGAATCGAAACAGAA-TT 790
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 718 AGTAGGCTAATGCCTAACGGTCGCATTATGGTGAACTGTGCGGGAATCGAAACAGAACTT 777
Query 791 GCAGAATGGAAAGCCTCAGTTGTTGTTAGATGATTCAGCCGGGATGTTGAATTCCACTGT 850
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 778 -CAGAATGGAAAGCCTCAGTTGTTGTTAGATGACTCAGCCGGGATGTTGAATTCCACCGT 836
Query 851 CAAGATCTTGGCAGAAGCATTTCCTGGACAAGTTTGCTGGAAGAGAACACCGGATACACA 910
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct 837 CAAGATCTTGTCAGAAGCATTTCCTGGACAAGTTTGCTGGAAGAGAACACCAGATTCGGA 896
Query 911 AGGTCTCAACTTTCTAGCCTTAACCGGAGGCTTACCTGATCTTAGTGACTGGTCTAATAA 970
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 897 AGGTCTCAACTTTCTTGCCTTAACCGGAGGCTTACCTGATCTTAGTGACTGGTCTAGTAA 956
Query 971 AGTTCCAATTCGTTTGAGCGAAGTAGTGAAGCAATGGAAGCTTTGTGAGT-AG-ACG-AA 1027
|||||| ||||||| | ||||||||||||||||||||||||||||||| || || ||
Sbjct 957 GGTTCCAGTTCGTTTTTGTGAAGTAGTGAAGCAATGGAAGCTTTGTGAGTGAGTACACAA 1016
Query 1028 -GAAGCTGAAGTCTTT 1042
| ||||||||| |||
Sbjct 1017 AGTAGCTGAAGTTTTT 1032
> AT5G44590.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:17987591-17989227
FORWARD LENGTH=1050
Length=1050
Score = 800 bits (433), Expect = 0.0
Identities = 569/636 (89%), Gaps = 4/636 (1%)
Strand=Plus/Plus
Query 386 GGATGAGTTTGCGAGTTTGCCGCCTATTATCCCTAATGGTCCCATTGCAATCTACGGCTT 445
||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 GGACGAGTCTGCGTGTTTGCCGCCTATTATCCCTAATGGTCCCATTGCAATCTACGGCTT 437
Query 446 GGGTGGTGGAACAGCTGCAAGATTGATGCTTGAGTTGTGGCCTACAATGCAGCTTGAAGG 505
||||||||||||||||||||||||||| ||||||||||||||| ||| | ||||||||||
Sbjct 438 GGGTGGTGGAACAGCTGCAAGATTGATTCTTGAGTTGTGGCCTTCAACGGAGCTTGAAGG 497
Query 506 TTGGGAAATTGATGAAATTTTGATTGAGAAAGCAAGAGACTATCTCGGGTTGTCTGAGCT 565
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 498 TTGGGAAATCGATGAAATTTTGATTGAGAAAGCAAGAGACTATCTCGGGCTGTCTGAGCT 557
Query 566 AGAGAAACCAACATCGAAAGGCGGTAGACTTTGTGTTCATGTAGATGATGCTCTCTCTCC 625
||||| ||| ||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 558 AGAGATACCGACATCAAAAGGCGGTAGACTTTGTATTCATGTAGATGATGCTCTCTCTCC 617
Query 626 TTCTCAAGATGTTTCAGGAAGATATGCTGGGATCATTGTTGATTTGTTTGCTGATGGAAA 685
|| |||||||| |||| |||||||||||||||||| ||||||||||| || ||||||||
Sbjct 618 TTGTCAAGATGATTCAAAAAGATATGCTGGGATCATCGTTGATTTGTTCGCGGATGGAAA 677
Query 686 GGT-CTTAGATCAGCTGCAACAGGTCCCTATTTGGTTGGAGCTTGCTAGTAGGCTGATGC 744
|| ||| |||||||||||| || | || || ||| | || || ||||||||| | ||||
Sbjct 678 AGTGCTT-GATCAGCTGCAAGAGATTCCAATGTGGCTAGAACTGGCTAGTAGGTTAATGC 736
Query 745 CTAACGGTCGCATTATGGTGAATTGTGCGGGAATCGAAACAGAATTGCAGAATGGAAAGC 804
||||||||||| |||||||||||||||||||||||||||||||| | |||||||||| |
Sbjct 737 CTAACGGTCGCCTTATGGTGAATTGTGCGGGAATCGAAACAGAAGTAAAGAATGGAAAAC 796
Query 805 CTCAGTTGTTGTTAGATGATTCAGCCGGGATGTTGAATTCCACTGTCAAGATCTTGGCAG 864
| ||||| |||||||||||| || ||||||||||||| |||||||||||||| |||
Sbjct 797 CAGAGTTGGTGTTAGATGATTTGGCTTGGATGTTGAATTCTACTGTCAAGATCTTATCAG 856
Query 865 AAGCATTTCCTGGACAAGTTTGCTGGAAGAGAACACCGGATACACAAGGTCTCAACTTTC 924
|||||||||||||||||||| | |||||||||||||| ||| || ||||||||||||||
Sbjct 857 AAGCATTTCCTGGACAAGTTAGTTGGAAGAGAACACCAGATTCAGAAGGTCTCAACTTTG 916
Query 925 TAGCCTTAACCGGAGGCTTACCTGATCTTAGTGACTGGTCTAATAAAGTTCCAATTCGTT 984
| || ||||| ||||||||||||||||||||||||||||||| ||| |||||| | ||||
Sbjct 917 TGGCATTAACAGGAGGCTTACCTGATCTTAGTGACTGGTCTAGTAAGGTTCCAGTCCGTT 976
Query 985 TGAGCGAAGT-AGTGAAGCAATGGAAGCTTTGTGAG 1019
| |||||| | |||||||| |||||||||||| |||
Sbjct 977 TAAGCGAA-TCAGTGAAGCTATGGAAGCTTTGCGAG 1011
Score = 281 bits (152), Expect = 7e-75
Identities = 288/349 (83%), Gaps = 27/349 (8%)
Strand=Plus/Plus
Query 42 ATGACCATCTCATCGCTACATTCACTTTCTCG-ATACGAAAGTTGCTTCCTTTTATCCCA 100
||||||||||||| ||||||||||||||| | | || |||||||||| ||| ||| ||
Sbjct 1 ATGACCATCTCATATCTACATTCACTTTCTTGCA-ACAAAAGTTGCTTGCTTACATCTCA 59
Query 101 ATTTTCAAAACCCTTGTTCATAAACCCATCTCAGAACAAACCCAGATTCTCAATTTCGTT 160
|||||||||||||||||| ||||||| | ||||||| |||| ||||||||| ||||| ||
Sbjct 60 ATTTTCAAAACCCTTGTTTATAAACCAAACTCAGAAGAAACTCAGATTCTCGATTTCCTT 119
Query 161 TTGCCTCAAGCAAAGTGATCGTGATGAGAGGCAAATTCAACAAGAATCTAGCAAAGATGA 220
|||||||||||||| | || || || ||| |||||| || | | | ||
Sbjct 120 TTGCCTCAAGCAAA---A-CG-AAT--CTGG--TATTGAACAAG--TC--G---A-A-GA 161
Query 221 CGACGAAGAAGAAGAAGAGTATT-GGGTTGTTACAGCCGTGAGAAGCAGATACAATGAGA 279
| |||||||||||||| | || ||||| || ||||| | |||||||||||||||||
Sbjct 162 --A-GAAGAAGAAGAAGAAT-TTACCGTTGTGACGGCCGTAAAAAGCAGATACAATGAGA 217
Query 280 TTGTTATAGTGGAGACTGTTT-CTTCCAGATATCTTCTTCTTGATTCAACTAAGAATGTG 338
||||||||||||| ||| ||| |||| |||||||||||||||||||| |||| |||||||
Sbjct 218 TTGTTATAGTGGATACT-TTTGCTTCTAGATATCTTCTTCTTGATTCCACTAGGAATGTG 276
Query 339 CATAGTGTTATCAATAAAGGAGGTCAAAATTGGACTGGATCTTATTGGG 387
||||||||||||||||||||||| || |||||||||||| |||||||||
Sbjct 277 CATAGTGTTATCAATAAAGGAGGCCAGAATTGGACTGGAGCTTATTGGG 325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51088127499
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5