BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948643
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20360.1 | Symbols: ATRAB8D, ATRABE1B, RABE1b | RAB GTPase h... 1242 0.0
> AT4G20360.1 | Symbols: ATRAB8D, ATRABE1B, RABE1b | RAB GTPase
homolog E1B | chr4:10989952-10991709 FORWARD LENGTH=1758
Length=1758
Score = 1242 bits (672), Expect = 0.0
Identities = 1072/1265 (85%), Gaps = 28/1265 (2%)
Strand=Plus/Plus
Query 209 CGTCGCGCCTTCACCGTACGCGCCGC-CAGAGGAAAATTCGA-ACGCAAGAAACCTCACG 266
|||||| |||||||||| |||||||| | | ||||| ||||| | | ||||| ||||| |
Sbjct 265 CGTCGCTCCTTCACCGTCCGCGCCGCTC-GTGGAAAGTTCGAGA-GGAAGAAGCCTCATG 322
Query 267 TGAACATAGGAACAATAGGTCACGTCGACCATGGCAAAACAACACTAACCGCAGCGT-TA 325
| ||||| ||||| || ||||| || |||||||| ||||| || |||||||||| | ||
Sbjct 323 TCAACATCGGAACCATCGGTCATGTTGACCATGGGAAAACTACTTTAACCGCAGC-TCTA 381
Query 326 ACAATGGCTTTAGCTT-CAGTAGGAAACAGTGTAGCCAAAAAATACGACGAAATCGACGC 384
|| |||||| | |||| || | || ||| || || ||||| |||||||| || |||||
Sbjct 382 ACCATGGCTCTCGCTTCCA-TTGGTTCCAGCGTCGCTAAAAAGTACGACGAGATTGACGC 440
Query 385 AGCTCCTGAAGAAAGAGCTCGTGGTATCACAATCAACACTGCAACGGTCGAATACGAAAC 444
|| || || || ||||||||||||||||||||||||||||| || || || ||||| ||
Sbjct 441 TGCGCCGGAGGAGAGAGCTCGTGGTATCACAATCAACACTGCTACTGTTGAGTACGAGAC 500
Query 445 AGAGAATCGTCATTACGCTCATGTTGATTGTCCTGGTCATGCTGATTATGTCAAGAACAT 504
||||||||||| |||||||| ||||||||||||||||| |||||||| || ||||| ||
Sbjct 501 TGAGAATCGTCACTACGCTCACGTTGATTGTCCTGGTCACGCTGATTACGTTAAGAATAT 560
Query 505 GATTACTGGTGCTGCTCAAATGGATGGTGCGATTCTTGTTGTCTCTGGTGCTGATGGACC 564
|||||| || ||||| || ||||| || || || || ||||| || || || ||||| ||
Sbjct 561 GATTACCGGAGCTGCACAGATGGACGGAGCTATCCTCGTTGTTTCCGGCGCCGATGGTCC 620
Query 565 AATGCCACAAACTAAAGAACATAT-CTTGTTGGCGAAGCAAGTTGGTGTTCCTGATATGG 623
||||| || |||||||| ||||| ||| ||||| ||||| |||||||||||||||||||
Sbjct 621 TATGCCTCAGACTAAAGAGCATATCCTT-TTGGCTAAGCAGGTTGGTGTTCCTGATATGG 679
Query 624 TTGTGTTTCTTAATAAAGAAGATCAAGTTGATGATGCTGAGCTTT-TAGAGCTTGTTGAG 682
||||||||||||| ||||| |||||||| |||||||| ||| || ||||||| ||||||
Sbjct 680 TTGTGTTTCTTAACAAAGAGGATCAAGTAGATGATGCAGAG-TTGCTAGAGCTCGTTGAG 738
Query 683 CTTGAGGTTCGCGAGCTTTTATCGTCTTATGAGTTTAATGGCGATGATATTCCGATTATT 742
||||||||||| |||||| | ||||||||||| ||||| || |||||||||||||||||
Sbjct 739 CTTGAGGTTCGTGAGCTTCTCTCGTCTTATGAATTTAACGGTGATGATATTCCGATTATC 798
Query 743 TCCGGTTCTGCT-TTGTTAGCTGTAGAGACT-TTGACTGAGAAACCTAATGTTAAGAGAG 800
|| ||||||||| || ||||| || |||||| || |||||||| ||||| ||||||||||
Sbjct 799 TCTGGTTCTGCTCTT-TTAGCCGTTGAGACTCTT-ACTGAGAATCCTAAGGTTAAGAGAG 856
Query 801 GTGAGAATAAATGGGTTGATAAGATTTATGAG-TTGATGGATTCTGTTGAT-AGTTATAT 858
|||| || |||||||| |||||||||||||| || |||||| |||||||| | ||| ||
Sbjct 857 GTGATAACAAATGGGTAGATAAGATTTATGAACTT-ATGGATGCTGTTGATGA-TTACAT 914
Query 859 CCCGATTCCGACTAG-G-CAGACGGAGTTGCCGTTTTTGTTGGCGGTTGAGGATGTTTTT 916
||| || || | || | || || || ||||| || ||||| || ||||||||||| ||
Sbjct 915 CCCTATCCCT-C-AGAGACAAACTGAATTGCCATTCTTGTTAGCTGTTGAGGATGTGTTC 972
Query 917 TCGATTACTGGTCGTGGTACGGTTGCTACGGGGCGTGTCGAAAGAGGTT-GTGTTAAGGT 975
|| || ||||| ||||||||||| ||||| ||||||||||| |||||| | ||||||||
Sbjct 973 TCTATCACTGGACGTGGTACGGTGGCTACAGGGCGTGTCGAGAGAGGTACG-GTTAAGGT 1031
Query 976 TGGGGAGACTGTTGATTTGGTGGGATTGAGAGAGACTAGGAATTATACGGTTACCGGGGT 1035
|| |||||||| ||||| ||||| ||||| |||||||||| ||| || || || |||||
Sbjct 1032 AGGAGAGACTGTAGATTTAGTGGGTTTGAGGGAGACTAGGAGTTACACTGTCACTGGGGT 1091
Query 1036 GGAAATGTTTCAGAAGATTCTTGATGAAGCTATGGCTGGTGATAATGTAGGATTGTTGCT 1095
|||||||||||||||||||||||||| ||| | |||||||| |||||||| ||||||||
Sbjct 1092 TGAAATGTTTCAGAAGATTCTTGATGAGGCTTTAGCTGGTGACAATGTAGGGTTGTTGCT 1151
Query 1096 TAGAGGTATACAAAAGGCGGATATTCAGAGAGGTATGGTTTTGGCTAAGCCGGGTTCGAT 1155
||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1152 TAGGGGTATTCAAAAGGCTGATATTCAGAGAGGTATGGTTTTAGCTAAGCCGGGATCGAT 1211
Query 1156 TACTCCACATACTAAGTTTGAAGCGATTGTTTATGTGTTGAAGAAAGAAGAAGGTGGAAG 1215
|||||||||||| ||||||||||| ||| | ||||||||||||||||| |||||||||||
Sbjct 1212 TACTCCACATACCAAGTTTGAAGCAATTATCTATGTGTTGAAGAAAGAGGAAGGTGGAAG 1271
Query 1216 ACATTCGCCGTT-TTTCGCTGGGTATAGACCTCAGTTTTACATGAGGACTACGGATGTTA 1274
||||| || || ||| || ||||| || |||||||| ||||||||||| || |||||||
Sbjct 1272 GCATTCTCCATTCTTT-GCAGGGTACAGGCCTCAGTTCTACATGAGGACGACTGATGTTA 1330
Query 1275 CGGGTAAAGTGACTAAGATTATGAATGATAAAGACGAGGAATCGAAGATGGTTATGCCTG 1334
||||||||||||| ||||| ||||| || ||||| || || ||||||||||||||||| |
Sbjct 1331 CGGGTAAAGTGACGAAGATCATGAACGACAAAGATGAAGAGTCGAAGATGGTTATGCCCG 1390
Query 1335 GTGATCGTGTTAAGATTGTTGTTGAGCTTATTGTGCCTGTTGCTTGTGAACAAGGGATGA 1394
||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1391 GTGATCGAGTGAAGATTGTTGTTGAGCTTATTGTGCCGGTGGCTTGTGAACAAGGGATGA 1450
Query 1395 GGTTTGCTATTAGAGAAGGAGGAAAGACTGTTGGTGCTGGAGTGATTCAGTCGATTATCG 1454
|||||||||| |||||||||||||||||||||||||||||||| ||| | |||| |||
Sbjct 1451 GGTTTGCTATCAGAGAAGGAGGAAAGACTGTTGGTGCTGGAGTTATTGGGACGATCCTCG 1510
Query 1455 AATGA 1459
|||||
Sbjct 1511 AATGA 1515
Score = 62.1 bits (33), Expect = 2e-08
Identities = 38/40 (95%), Gaps = 2/40 (5%)
Strand=Plus/Plus
Query 103 TAAAC-CAAAATCCCTAACTCTCTCTTCCTCCTTCCTCCC 141
||||| ||||| ||||||||||||||||||||||||||||
Sbjct 186 TAAACTCAAAA-CCCTAACTCTCTCTTCCTCCTTCCTCCC 224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72941391885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5