BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948648

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G06830.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...   148    3e-35


> AT5G06830.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF773 (InterPro:IPR008491); 
Has 365 Blast hits to 359 proteins in 109 species: Archae 
- 9; Bacteria - 13; Metazoa - 209; Fungi - 7; Plants - 
47; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). 
| chr5:2116783-2119629 REVERSE LENGTH=1819
Length=1819

 Score =  148 bits (80),  Expect = 3e-35
 Identities = 92/98 (94%), Gaps = 0/98 (0%)
 Strand=Plus/Plus

Query  14   TCGAAGAATGGTTAGTGGATCGGAAGAGAATTCCGGCGGACTGGAGGAAGAGGGTGGCTG  73
            ||| ||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  126  TCGGAGAATGGTTGGTGGATCGGAAGAGAATTCCGGCGGATTGGAGGAAGAGGGTTGCTG  185

Query  74   CGATCAGAGTCAAAATCTTAAAAGAGTTCTCTGCTTTG  111
             ||||||||||||||||||||||||||||||| |||||
Sbjct  186  TGATCAGAGTCAAAATCTTAAAAGAGTTCTCTTCTTTG  223



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19353083365


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5