BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948670
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44460.1 | Symbols: CML43 | calmodulin like 43 | chr5:179172... 876 0.0
> AT5G44460.1 | Symbols: CML43 | calmodulin like 43 | chr5:17917226-17917983
FORWARD LENGTH=758
Length=758
Score = 876 bits (474), Expect = 0.0
Identities = 535/565 (95%), Gaps = 2/565 (0%)
Strand=Plus/Plus
Query 1 AACTACGAAGAAGAGTAACAATGGAGTTCAATAACGAGAAGAAGAAACTCTCGAGACAAT 60
||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 41 AACTAAGAAGAAGAGTAACAATGGAGATCAATAACGAGAAGAAGAAACTCTCAAGACAAT 100
Query 61 CTTCTTCCTTTAGACTCCGAAGTCCAAGTCTAAACGCTCTCCGTCTCCACCGAGT-TTTC 119
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 101 CTTCTTCCTTCAGACTACGAAGTCCAAGTCTAAACGCTCTTCGTCTCCACCGAGTCTTT- 159
Query 120 GACCTATTCGACAAAAACAACGACGGATTCATCACCGTCGAAGAACTAAGCCAAGCACTC 179
||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 160 GACCTATTCGACAAAAATAACGATGGATTCATAACCGTCGAAGAACTAAGTCAAGCACTC 219
Query 180 TCACGACTCGGTCTCGAAGCTGATTTCTCCGATCTCAAATCAACGGTTGACTCTTTCATC 239
||| ||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 220 TCAAGACTCGGTCTCGACGCTGATTTCTCCGATCTCAAGTCAACAGTTGATTCTTTCATC 279
Query 240 AAACCAGACAAAACCGGACTCCGGTTCGATGACTTTGCTGCACTCCACAAAACCCTAGAC 299
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 280 AAACCGGACAAAACCGGACTCCGGTTCGATGACTTTGCTGCACTCCACAAAACCTTAGAC 339
Query 300 GAATCTTTCTTTGGAGGAGAAGGAAGTTGCTGCGACGGGTCTCCGGAATCAGATCTTGAA 359
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 340 GAATCTTTCTTTGGAGGAGAAGGAAGTTGCTGTGATGGGTCTCCGGAATCAGATCTTGAA 399
Query 360 GAAGCTTTCAATGTATTTGATGAAGACGGAGATGGATTTATCTCCGCCGTGGAATTACAA 419
|||||||| ||||| || ||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 400 GAAGCTTTTAATGTGTTCGATGAAGACGGAGATGGTTTTATCTCCGCTGTGGAATTGCAA 459
Query 420 AAGGTTTTGAAGAAGCTTGGACTACCTGAAGCAGGAGAGATTGAACAAGTGAAGAAGATG 479
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 460 AAGGTTTTGAAGAAGCTTGGATTACCTGAAGCAGGAGAGATTGAACAAGTGGAGAAGATG 519
Query 480 ATTGTATCTGTTGATAGTAATCATGATGGTCGCGTTGACTTTTTCGAATTCAAGAACATG 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 ATTGTCTCTGTTGATAGTAATCATGATGGTCGCGTTGACTTTTTCGAATTCAAGAACATG 579
Query 540 ATGCAAACTGTTGTTGTTCCTTCTT 564
|||||||||||||||||||||||||
Sbjct 580 ATGCAAACTGTTGTTGTTCCTTCTT 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28332058908
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5