BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948672
Length=1474
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44440.1 | Symbols: | FAD-binding Berberine family protein ... 1567 0.0
AT5G44417.1 | Symbols: | pseudogene, similar to CPRD2, blastp ... 1164 0.0
> AT5G44440.1 | Symbols: | FAD-binding Berberine family protein
| chr5:17910557-17912312 REVERSE LENGTH=1756
Length=1756
Score = 1567 bits (848), Expect = 0.0
Identities = 976/1038 (94%), Gaps = 8/1038 (1%)
Strand=Plus/Plus
Query 438 GCTGCGGATAACATAATCGATGCACTTGTGGTCGATGCGAGTGGGAGGATTCTTGACCGA 497
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 609 GCTGCGGATAACATAATCGATGCACTTGTGGTTGACGCGAGTGGGAGGATTCTTGACCGA 668
Query 498 CAAGCAATGGGCGAGGAGTACTACTTTTGGGCGATTTGTGGAGGGGGCGGATCAAGCTTT 557
||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||
Sbjct 669 CAAGCAATGGGCGAGGA-T--TACTTTTGGGCTATTCGTGGAGGGGGCGGATCAAGCTTC 725
Query 558 GGCATTATACTATCGTGGAAGATTAAATTAGTCGATGTTCCATCTACAATAACCGTGTTT 617
|| ||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 726 GGTGTTATACTATCGTGGAAGGTTAAATTAGTCGATGTTCCATCCACAATTACCGTGTTT 785
Query 618 AAAGTCAAGAGAACATCAAAGAAAGAGGCCGTTAGGATCATCAACAAATGGCAATATGTT 677
|||||| ||| |||||| |||||||||||||||||||||||||| ||||||||||||| |
Sbjct 786 AAAGTCCAGAAAACATCGAAGAAAGAGGCCGTTAGGATCATCAAGAAATGGCAATATGCT 845
Query 678 GCAGATAAGGTTCCTGATGATCTTTTCATTAGGACAACATTGGAGAGATCAAACAAAAAC 737
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 846 GCAGATAAGGTTCCTGATGATCTTTTCATTAGGACAACATTGGAGAGATCAAACAAGAAC 905
Query 738 GCAGTACACGCTTTGTTCACTGGTCTTTATCTCGGTCCCGCGAACAATCTTTTGGCGTTG 797
||||||||||||||||||||||| || ||| | ||||| | ||||||||| |||||||||
Sbjct 906 GCAGTACACGCTTTGTTCACTGGACTATATATTGGTCCGGTGAACAATCTATTGGCGTTG 965
Query 798 ATGGAAGAAAAGTTTCCGGAATTAGGTCTTGAGAAAGATGGTTG-CACAGAGATGAGTTG 856
||||||||||||||||||||| |||||||||||||||| ||||| | ||||||||||||
Sbjct 966 ATGGAAGAAAAGTTTCCGGAACTAGGTCTTGAGAAAGAAGGTTGTGA-AGAGATGAGTTG 1024
Query 857 GGTTGAGTCTGTACTCTGGTTTGCTGATTTCCATAAAGGAGAATCTCTTGATGATGTTCT 916
| |||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 1025 GATTGAGTCTGTACTCTGGTTTGCTGATTTCCCTAAAGGAGAATCTCTTG--G-TGTTCT 1081
Query 917 CACGAATCGAGAGCGTACATCTCTATCTTACAAGGGAAAAGATGATTTTGTCCAAGAACC 976
||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct 1082 CACGAATCGTGAGCGTACATCTCTATCTTTCAAAGGCAAAGATGATTTTGTCCAAGAACC 1141
Query 977 GATACCCGAGGCTGCAATTCAAGAGCTATGGAGGCGATTAGACGCCCCCGAGGCTCGACT 1036
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||
Sbjct 1142 GATACCCGAGGCTGCAATTCAAGAGATATGGAGGCGATTAGAAGCCCCCGAGGCTCGGCT 1201
Query 1037 TGCAAAGATCATATTAACTCCATTTGGTGGGAAAATGAGTGAAATTGCAGAGCACGAAAC 1096
|| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1202 TGGAAAGATCATATTAACTCCATTTGGTGGGAAAATGAGTGAAATGGCAGAGTACGAAAC 1261
Query 1097 ACTATTCCCACATCGAGAAGGGAATCTCTATGAGATTCAGTATGTGGCTTACTGGAGAGA 1156
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 ACCATTCCCACATCGAGGAGGGAATCTCTATGAGATTCAGTATGTGGCTTACTGGAGAGA 1321
Query 1157 AGAGGAAGACAAGAACATGACGGGGACAAATAAATATCTGAAATGGGTCGATAGCGTTTA 1216
||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1322 AGAGGAAGACAAGAACAAGACGGAGACAGATAAATATCTGAAATGGGTCGATAGCGTTTA 1381
Query 1217 CGAACTTATGACTCCATATGTTTCGAAATCTCCAAGAGGAGCTTATGTCAATTTCGTGGA 1276
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1382 CGAATTTATGACTCCATATGTTTCGAAATCTCCAAGAGGAGCTTATGTCAATTTCAAGGA 1441
Query 1277 TATGGATTTGGGTATGTATCTTGGAAAGAAGAAGACAAAGTACGAGGAAGGAAAGAGTTG 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 TATGGATTTGGGTATGTATCTTGGAAAGAAGAAGACAAAGTACGAGGAAGGAAAGAGTTG 1501
Query 1337 GGGAGTGAAGTACTTCAAGAACAATTTCGAGAGATTGGTGAGAGTTAAAACGAGTGTTGA 1396
|||||||||||| |||||||||||||||||||||||||||||||| || || || |||||
Sbjct 1502 GGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGAGTGAAGACTAGGGTTGA 1561
Query 1397 TCCAACAGATTTCTTCTGCGATGAACAGAGCATTCCCCTGCTGAACAAAGTTACCTAAAG 1456
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||
Sbjct 1562 TCCAACAGATTTCTTCTGCGATGAACAGAGCATTCCTCTGGTGAACAAAGTTACCTGAAG 1621
Query 1457 ATATCATTTGAAGTTTTT 1474
||||||||||||||||||
Sbjct 1622 ATATCATTTGAAGTTTTT 1639
Score = 676 bits (366), Expect = 0.0
Identities = 410/432 (95%), Gaps = 0/432 (0%)
Strand=Plus/Plus
Query 2 TAAGTGTCTTTCTTACCGGATGAACCACAACACCGTCGAATCCAAAGTCATACACACTTC 61
|||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||
Sbjct 113 TAAGTGTCTTTCTTACCGAATGAACGACAACACCGTCGAACCCAAAGTCATACACACTTC 172
Query 62 CAAAGACTCTTCCTTTTTCTCCATTTTGGATTCTTCCATACAAAATCCAAGATTCTCGGT 121
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 173 CAAAGACTCTTCCTTTTTTTCCATATTGGATTCTTCGATACAAAATCCAAGATTCTCGGT 232
Query 122 TTCTGAAACACCTAAACCGGTCTCAATCATAACTCCGGTTAAAGCCAGTGACGTTCAAAC 181
||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 233 TTCCGAAACACCTAAACCGGTCTCAATCATCACTCCCGTTAAAGCCAGTGACGTTCAAAC 292
Query 182 CGTGATCAGATGCGCACGGTTGCATGGAATTCATGTAAGGACTCGGAGCGCCGGTCACTG 241
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 293 TGTGATCAGATGCGCACAGCTGCATGGAATTCATGTAAGGACTCGGAGCGCCGGTCACTG 352
Query 242 CTACGAAGGTCTATCGTACATTGCGTACAACAAACCATTCGTTGTCATCGATATACGGAA 301
|||||||||||| || ||||||||||||||||||||||||| |||||||||| || ||||
Sbjct 353 CTACGAAGGTCTCTCTTACATTGCGTACAACAAACCATTCGCTGTCATCGATTTAAGGAA 412
Query 302 TCTTCAGTCTATATCATTAGACGTCGATAACCGGACCGGTTGGGTCCAAACCGGAGCAAC 361
||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 413 TCTTCGGTCTATATCATTAGACGTTGATAACCGGACAGGTTGGGTCCAAACCGGAGCAAC 472
Query 362 GGCTGGGGAATTGTATTATGAGATTGGGAAAACCCCCAAAACTCTTGCTTTCCCGGCCGG 421
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 473 GGCTGGGGAATTGTATTATGAGATTGGGAAAACCACCAAATCTCTTGCTTTCCCGGCCGG 532
Query 422 TATTCACCCAAC 433
||||||||||||
Sbjct 533 TATTCACCCAAC 544
> AT5G44417.1 | Symbols: | pseudogene, similar to CPRD2, blastp
match of 42% identity and 7.0e-94 P-value to GP|13161397|dbj|BAB33033.1||AB056448
CPRD2 {Vigna unguiculata} | chr5:17901832-17903346
REVERSE LENGTH=1515
Length=1515
Score = 1164 bits (630), Expect = 0.0
Identities = 873/989 (88%), Gaps = 21/989 (2%)
Strand=Plus/Plus
Query 441 GCGGATAACATAATCGATGCACTTGTGGTCGATGCGA-GTGGGAGGATTCTTGACCGACA 499
||||||||||||||||||||||||||||| || || | ||||||||||||||||||||||
Sbjct 541 GCGGATAACATAATCGATGCACTTGTGGTTGACGC-ACGTGGGAGGATTCTTGACCGACA 599
Query 500 AGCAATGGGCGAGGAGTACTACTTTTGGGCGATTTGTGGAGGGGGCGGATCAAGCTTTGG 559
||||||||| ||||| | ||||||||||||||| ||||||| || ||||| ||||||||
Sbjct 600 AGCAATGGGTGAGGA-T--TACTTTTGGGCGATTCGTGGAGGCGGTGGATCGAGCTTTGG 656
Query 560 CATTATACTATCGTGGAAGATTAAATTAGTCGATGTTCCATCTACAATAACCGTGTTTAA 619
|| ||||||| ||||||||||| |||||||||||||| || || | |||||||||||
Sbjct 657 TGTTGTACTATCATGGAAGATTAAGTTAGTCGATGTTCCGTCCACGGTCACCGTGTTTAA 716
Query 620 AGTCAAGAGAACATCAAAGAAAGAGGCCGTTAGGATCATCAACAAATGGCAATATGTTGC 679
|||| ||| |||||| |||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 717 AGTCCAGA-AACATCGGAGAAAGAGGCCGTTAGGATCATCAACAAGTGGCAGTATGTTGC 775
Query 680 AGATAAGGTTCCTGATGATCTTTTCATTAG-GACAACATTGGAGAGATCAAACAAAAACG 738
|||||||| ||||| ||||||||||| || | |||| ||||||||||||||| |||||
Sbjct 776 GGATAAGGTCCCTGAAGATCTTTTCATCAGCG-CAACGTTGGAGAGATCAAACGAAAACT 834
Query 739 CAGTACACGCTTTGTTCACTGGTCTTTATCTCGGTCCCGCGAACAATCTTTTGGCGTTGA 798
| || || |||||||| ||||| || ||||| ||||| | ||| ||||| ||||| ||||
Sbjct 835 CTGTGCAGGCTTTGTTTACTGGACTCTATCTTGGTCCGGTGAATAATCTCTTGGCCTTGA 894
Query 799 TGGAAGAAAAGTTTCCGGAATTAGGTCTTGAGAAAGATGGTTGCACAGAGATGAGTTGGG 858
|||||||||||||||| |||||||||||||| | | | |||||||||||||||||||
Sbjct 895 TGGAAGAAAAGTTTCCAGAATTAGGTCTTGATATCCAAGACTGCACAGAGATGAGTTGGG 954
Query 859 TTGAGTCTGTACTCTGGTTTGCTGATTTC-CATAAAGGAGAATCTCTTGATGATGTTCTC 917
|||| |||| ||||||||||||||||||| | ||||||||| ||||||| | |||||||
Sbjct 955 TTGAATCTGCACTCTGGTTTGCTGATTTCTC-TAAAGGAGAGTCTCTTG--G-TGTTCTC 1010
Query 918 ACGAATC-GAGAGCGTACATCTCTATCTTACAAGGGAAAAGATGATTTTGTCCAAGAACC 976
|||||| || ||||||||||||| |||| |||||| ||||| || ||||||||||||||
Sbjct 1011 GCGAATCGGA-AGCGTACATCTCTGTCTTTCAAGGGTAAAGACGACTTTGTCCAAGAACC 1069
Query 977 GATACCCGAGGCTGCAATTCAAGAGCTATGGAGGCGATTAGACGCCCCCGAGGCTCGACT 1036
||||||||||||||||||||||| |||||||||||||||||| || || |||||||| ||
Sbjct 1070 GATACCCGAGGCTGCAATTCAAGCGCTATGGAGGCGATTAGAGGCGCCTGAGGCTCGGCT 1129
Query 1037 TGCAAAGATCATATTAACTCCATTTGGTGGGAAAATGAGTGAAATTGCAGAGCACGAAAC 1096
||||||| | ||||||||||||| |||||| |||||||||||||| ||||||||||||||
Sbjct 1130 TGCAAAGGTTATATTAACTCCATATGGTGGAAAAATGAGTGAAATCGCAGAGCACGAAAC 1189
Query 1097 A-CTATTCCCACATCGAGAAGGGAATCTCTATGAGATTCAGTATGTGGCTTACTGGAGAG 1155
| ||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct 1190 GTC-ATTCCCACATCGAAAAGGGAATCTCTATGAGATTCAGTATCTGGCTTTTTGGAGAG 1248
Query 1156 AAGAGGAAGACAAGAACATGACGGGGACAAATAAATATCTGAAATGGGTCGATAGCGTTT 1215
|||||||||||||||||| || || ||| | || |||||||||||||| || |||||||
Sbjct 1249 AAGAGGAAGACAAGAACAAGATGGAAACAGAGAAGTATCTGAAATGGGTTGAGAGCGTTT 1308
Query 1216 ACGAA-CTTATGACTCCATATGTTTCGAAATCTCCAAGAGGAGCTTATGTCAATTTCGTG 1274
|| || ||||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||
Sbjct 1309 AC-AATCTTATGACTCCTTATGTTTCGAAATCTCCAAGAAGAGCTTATGTCAACTTCATG 1367
Query 1275 GATATGGATTTGGGTATGTATCTTGGAAAG-AAGAAGACAAAGTACGAGGAAGGAAAGAG 1333
||| | |||||||| ||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 1368 GATCTTGATTTGGGAATGTATCTTGGAAAGGAAGA-GACAAAGTACGAGGAAGGGAAGAG 1426
Query 1334 TTGGGGAGTGAAGTACTTCAAGAACAATTTCGAGAGATTGGTGAGAGTTAAAACGAGTGT 1393
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 1427 TTGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGAGTGAAAACAAGCGT 1486
Query 1394 TGATCCAACAGATTTCTTCTGCGATGAAC 1422
||||||||||||||||||||| |||||||
Sbjct 1487 TGATCCAACAGATTTCTTCTGTGATGAAC 1515
Score = 438 bits (237), Expect = 6e-122
Identities = 312/348 (90%), Gaps = 6/348 (2%)
Strand=Plus/Plus
Query 2 TAAGTGTCTTTCTTACCGGATGAACCACAACACCGTCGAATCCAAAGTCATACACACTTC 61
||||||||||||| ||||||| ||| |||||||| ||| ||||||| |||||||||||||
Sbjct 93 TAAGTGTCTTTCTCACCGGATTAACGACAACACCATCGTATCCAAAATCATACACACTTC 152
Query 62 CAAAGACTC-TTCCTTTTTCTCCATTTTGGATTCTTCCATACAAAATCCAAGATTCTCGG 120
||||||||| | ||||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 153 CAAAGACTCATCCCTTTTT-TCCATCTTGGATTCTTCCATACAAAACCCAAGATTCTCGG 211
Query 121 TTTCTGAAACACCTAAACCGGTCTCAATCATAACTCCGGTTAAAGCCAGTGACGTTCAAA 180
|| | |||||||||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct 212 TTCCCGAAACACCTAAACCGGTCTCAATCGTCACTCCGGTTAGAGCCAGTGACGTTCAAA 271
Query 181 CCGTGATCAGATGCGCACGG-TTGCATGGAATTCATGTAAGGACTCGGAGCGCCGGTCAC 239
|||||||||||||||||| | || || ||||| || ||||||||||| ||||||||||||
Sbjct 272 CCGTGATCAGATGCGCACTGCTT-CACGGAATCCACGTAAGGACTCGCAGCGCCGGTCAC 330
Query 240 TGCTACGAAGGTCTATCGTACATTGCGTACAACAAACCATTCGTTGTCATCGATAT-ACG 298
||| ||||||| ||| |||||||||||||||||||||| ||| ||||||||| | | |
Sbjct 331 GGCTGGGAAGGTCAATCTTACATTGCGTACAACAAACCATACGTCGTCATCGATCTGA-G 389
Query 299 GAATCTTCAGTCTATATCATTAGACGTCGATAACCGGACCGGTTGGGT 346
|||||||| ||||||||||||||||||||| |||||||| ||||||||
Sbjct 390 GAATCTTCGGTCTATATCATTAGACGTCGAAAACCGGACTGGTTGGGT 437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72690389160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5