BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948675
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44440.1 | Symbols: | FAD-binding Berberine family protein ... 2028 0.0
AT5G44417.1 | Symbols: | pseudogene, similar to CPRD2, blastp ... 1640 0.0
AT5G44410.1 | Symbols: | FAD-binding Berberine family protein ... 1037 0.0
> AT5G44440.1 | Symbols: | FAD-binding Berberine family protein
| chr5:17910557-17912312 REVERSE LENGTH=1756
Length=1756
Score = 2028 bits (1098), Expect = 0.0
Identities = 1444/1610 (90%), Gaps = 27/1610 (2%)
Strand=Plus/Plus
Query 6 CACCTATCTTACAAAAATGGAGTtctcaaactctttgctct-ctcttttactcttttcac 64
|||||||||| | ||||||||||||||| || |||| | | || |||||||||||||||
Sbjct 4 CACCTATCTT--AGAAATGGAGTTCTCAAGCTTTTTG-TTTACTATTTTACTCTTTTCAC 60
Query 65 tgtgtgtttctcctctctctgctcttgtttca--gctcATAACCACGAAGACTTTCTTAA 122
|| | |||||||||| | | || | ||| |||| ||||| ||||||||||||||
Sbjct 61 TGAATATTTCTCCTCT-TGT-TTC-AG-CTCATGGCTC-CAACCATGAAGACTTTCTTAA 115
Query 123 GTGTCTTTCTCACAGGATAAACGACAACACCGTCGTATCCAAAGTCATACACACTTCCAA 182
|||||||||| || | || |||||||||||||||| | ||||||||||||||||||||||
Sbjct 116 GTGTCTTTCTTACCGAATGAACGACAACACCGTCGAACCCAAAGTCATACACACTTCCAA 175
Query 183 AGGCTCTTCCTTTTGTTCCATCTTGGATTCTTCCATACAAAATCCAAGATTCTCTG-TTC 241
|| ||||||||||| |||||| ||||||||||| |||||||||||||||||||| | |||
Sbjct 176 AGACTCTTCCTTTTTTTCCATATTGGATTCTTCGATACAAAATCCAAGATTCTCGGTTTC 235
Query 242 CTGAAACACCTAAACCGGTCTCAATCATCACTCCGGTTAAAGCCAGTGACGTTCAAACCG 301
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 236 C-GAAACACCTAAACCGGTCTCAATCATCACTCCCGTTAAAGCCAGTGACGTTCAAACTG 294
Query 302 TCATCAGATGCGCACGGCTGCATGGTATCCATGTAAGGACTCGCAGCGCCGGTCACGGCT 361
| ||||||||||||| ||||||||| || |||||||||||||| |||||||||||| |||
Sbjct 295 TGATCAGATGCGCACAGCTGCATGGAATTCATGTAAGGACTCGGAGCGCCGGTCACTGCT 354
Query 362 GGGAAGGTCAATCTTACATCGCGTACAACAAACCATTCGTC-GTCATCGATCTT-AGGAA 419
||||||| |||||||| ||||||||||||||||||| | ||||||||| || |||||
Sbjct 355 ACGAAGGTCTCTCTTACATTGCGTACAACAAACCATTCG-CTGTCATCGAT-TTAAGGAA 412
Query 420 TCTTCGGTCTATATCATTAAACGTTGATGACCGGACTGGTTGGGTCCAAACCGGAGCAAC 479
||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||
Sbjct 413 TCTTCGGTCTATATCATTAGACGTTGATAACCGGACAGGTTGGGTCCAAACCGGAGCAAC 472
Query 480 GACTGGAGAGTTATACTT-TGAGATTGGGAAAACCACCAAATCTCTTGCTTTCCCGGCCA 538
| |||| || || || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GGCTGGGGAATTGTA-TTATGAGATTGGGAAAACCACCAAATCTCTTGCTTTCCCGGCCG 531
Query 539 GTATCCACCCAACCGTCGGAGTCGGTGGACAGTTTAGCGGCGGAGGTTACGGCACGTTGC 598
|||| ||||||||||| || || || ||||| |||||||| || ||||| ||||| ||||
Sbjct 532 GTATTCACCCAACCGTTGGTGTAGGCGGACAATTTAGCGGTGGTGGTTATGGCACATTGC 591
Query 599 TTAGAAAATACGGTTTAGCGGCGGATAACATAATCGATGCACTTGTGGTTGACGCGCGTG 658
| || |||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 592 TAAGGAAATACGGTTTAGCTGCGGATAACATAATCGATGCACTTGTGGTTGACGCGAGTG 651
Query 659 GGAGGATTCTTGACCGACAAGCAATGGGTGAGGATTACTTTTGGGCGATTCGTGGAGGTG 718
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 652 GGAGGATTCTTGACCGACAAGCAATGGGCGAGGATTACTTTTGGGCTATTCGTGGAGGGG 711
Query 719 GCGGATCAAGCTTTGGTGTTGTACTATCGTGGAAGATTAAGTTAGTCGATGTTCCGTCCA 778
||||||||||||| |||||| |||||||||||||| |||| |||||||||||||| ||||
Sbjct 712 GCGGATCAAGCTTCGGTGTTATACTATCGTGGAAGGTTAAATTAGTCGATGTTCCATCCA 771
Query 779 CGGTCACCGTGTTTAAAGTCCAGAAAACATCGGAGAAAGAGGCTGTTAGGATCATCAACA 838
| | ||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
Sbjct 772 CAATTACCGTGTTTAAAGTCCAGAAAACATCGAAGAAAGAGGCCGTTAGGATCATCAAGA 831
Query 839 AGTGGCAGTATGTTGCAGCTAAGGTTCCTAATGATCTTTTCATCAGCG-CAACGTTGGAG 897
| ||||| |||| ||||| |||||||||| ||||||||||||| || | |||| ||||||
Sbjct 832 AATGGCAATATGCTGCAGATAAGGTTCCTGATGATCTTTTCATTAG-GACAACATTGGAG 890
Query 898 AGATCAGACAAAAACTTAGTGCACGCTTTGTTTACGGGACTTTATCTTGGTCCGGTGAAC 957
|||||| |||| ||| ||| ||||||||||| || ||||| ||| ||||||||||||||
Sbjct 891 AGATCAAACAAGAACGCAGTACACGCTTTGTTCACTGGACTATATATTGGTCCGGTGAAC 950
Query 958 GATCTGTTGGCCTTGATGGAAGAAAAGTTTCCGGAGTTAAATCTTGAGATGGAAGATTG- 1016
|||| ||||| ||||||||||||||||||||||| || |||||||| |||| |||
Sbjct 951 AATCTATTGGCGTTGATGGAAGAAAAGTTTCCGGAACTAGGTCTTGAGAAAGAAGGTTGT 1010
Query 1017 CACAGAGATGAGTTGGGTTGAGTCTGTACTCTGGTTTGCTGATTTCCCAAAAGGAGAGTC 1076
| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1011 GA-AGAGATGAGTTGGATTGAGTCTGTACTCTGGTTTGCTGATTTCCCTAAAGGAGAATC 1069
Query 1077 GCTTGGTGTTCTCGCGAATCG-GAAGCGTACATCTCTGTCTTTCAAGGGTAAAGATGATT 1135
|||||||||||| ||||||| | ||||||||||||| |||||||| || ||||||||||
Sbjct 1070 TCTTGGTGTTCTCACGAATCGTG-AGCGTACATCTCTATCTTTCAAAGGCAAAGATGATT 1128
Query 1136 TTGTCCAAGAACCGATACCCGAGGCTGCAATTCAAGAGCTATGGAGGCGATTAGAGGCGC 1195
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct 1129 TTGTCCAAGAACCGATACCCGAGGCTGCAATTCAAGAGATATGGAGGCGATTAGAAGCCC 1188
Query 1196 CTGAGGCTCGGCTTGCAAAGGTCATATTGACTCCATTTGGTGGGAAAATGAGTGAAATCG 1255
| ||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 1189 CCGAGGCTCGGCTTGGAAAGATCATATTAACTCCATTTGGTGGGAAAATGAGTGAAATGG 1248
Query 1256 CAGAGCACGAAACACCGTTCCCACATCGAGAAGGGAATCTCTATGAGATTCAGTATTTGG 1315
||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1249 CAGAGTACGAAACACCATTCCCACATCGAGGAGGGAATCTCTATGAGATTCAGTATGTGG 1308
Query 1316 CTTTTTGGAGAGAAGAGGAAGACAAGAACAAGATGGAAACAGAGAAGTATCTGAAATGGG 1375
||| |||||||||||||||||||||||||||| ||| ||||| || |||||||||||||
Sbjct 1309 CTTACTGGAGAGAAGAGGAAGACAAGAACAAGACGGAGACAGATAAATATCTGAAATGGG 1368
Query 1376 TCGAGAGCGTTTAC-AATCTTATGACTCCTTATGTTTCGAAATCTCCAAGAGGAGCTTAT 1434
|||| ||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1369 TCGATAGCGTTTACGAAT-TTATGACTCCATATGTTTCGAAATCTCCAAGAGGAGCTTAT 1427
Query 1435 GTCAATTTCATGGATCTTGATTTGGGAATGTATCTTGGAAAGGAGGAGACAAAGTACGAG 1494
|||||||||| |||| | |||||||| ||||||||||||||| || ||||||||||||||
Sbjct 1428 GTCAATTTCAAGGATATGGATTTGGGTATGTATCTTGGAAAGAAGAAGACAAAGTACGAG 1487
Query 1495 GAAGGAAAGAGTTGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGGGTG 1554
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1488 GAAGGAAAGAGTTGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGAGTG 1547
Query 1555 AAAACGAGTGTTGATCCAACAGATTTCTTCTGCGATGAACAGAGCATTCC 1604
|| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 AAGACTAGGGTTGATCCAACAGATTTCTTCTGCGATGAACAGAGCATTCC 1597
> AT5G44417.1 | Symbols: | pseudogene, similar to CPRD2, blastp
match of 42% identity and 7.0e-94 P-value to GP|13161397|dbj|BAB33033.1||AB056448
CPRD2 {Vigna unguiculata} | chr5:17901832-17903346
REVERSE LENGTH=1515
Length=1515
Score = 1640 bits (888), Expect = 0.0
Identities = 1015/1077 (94%), Gaps = 5/1077 (0%)
Strand=Plus/Plus
Query 520 TCTCTTGCTTTCCCGGCCAGTATCCACCCAACCGTCGGAGTCGGTGGACAGTTTAGCGGC 579
|||||||||||||| |||||||||||||||||||| || ||||| || ||||||||||||
Sbjct 442 TCTCTTGCTTTCCCAGCCAGTATCCACCCAACCGTTGGCGTCGGAGGCCAGTTTAGCGGC 501
Query 580 GGAGGTTACGGCACGTTGCTTAGAAAATACGGTTTAGCGGCGGATAACATAATCGATGCA 639
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 502 GGAGGTTACGGCACGTTGCTTAGAAAATACGGTTTAGCAGCGGATAACATAATCGATGCA 561
Query 640 CTTGTGGTTGACGCGCGTGGGAGGATTCTTGACCGACAAGCAATGGGTGAGGATTACTTT 699
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 CTTGTGGTTGACGCACGTGGGAGGATTCTTGACCGACAAGCAATGGGTGAGGATTACTTT 621
Query 700 TGGGCGATTCGTGGAGGTGGCGGATCAAGCTTTGGTGTTGTACTATCGTGGAAGATTAAG 759
||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||
Sbjct 622 TGGGCGATTCGTGGAGGCGGTGGATCGAGCTTTGGTGTTGTACTATCATGGAAGATTAAG 681
Query 760 TTAGTCGATGTTCCGTCCACGGTCACCGTGTTTAAAGTCCAGAAAACATCGGAGAAAGAG 819
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 682 TTAGTCGATGTTCCGTCCACGGTCACCGTGTTTAAAGTCCAG-AAACATCGGAGAAAGAG 740
Query 820 GCTGTTAGGATCATCAACAAGTGGCAGTATGTTGCAGCTAAGGTTCCT-AATGATCTTTT 878
|| |||||||||||||||||||||||||||||||| | |||||| ||| || ||||||||
Sbjct 741 GCCGTTAGGATCATCAACAAGTGGCAGTATGTTGCGGATAAGGTCCCTGAA-GATCTTTT 799
Query 879 CATCAGCGCAACGTTGGAGAGATCAGACAAAAACT-TAGTGCACGCTTTGTTTACGGGAC 937
||||||||||||||||||||||||| || |||||| | ||||| ||||||||||| ||||
Sbjct 800 CATCAGCGCAACGTTGGAGAGATCAAACGAAAACTCT-GTGCAGGCTTTGTTTACTGGAC 858
Query 938 TTTATCTTGGTCCGGTGAACGATCTGTTGGCCTTGATGGAAGAAAAGTTTCCGGAGTTAA 997
| ||||||||||||||||| |||| |||||||||||||||||||||||||| || |||
Sbjct 859 TCTATCTTGGTCCGGTGAATAATCTCTTGGCCTTGATGGAAGAAAAGTTTCCAGAATTAG 918
Query 998 ATCTTGAGATGGAAGATTGCACAGAGATGAGTTGGGTTGAGTCTGTACTCTGGTTTGCTG 1057
|||||| || |||| ||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 919 GTCTTGATATCCAAGACTGCACAGAGATGAGTTGGGTTGAATCTGCACTCTGGTTTGCTG 978
Query 1058 ATTTCCCAAAAGGAGAGTCGCTTGGTGTTCTCGCGAATCGGAAGCGTACATCTCTGTCTT 1117
||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 979 ATTTCTCTAAAGGAGAGTCTCTTGGTGTTCTCGCGAATCGGAAGCGTACATCTCTGTCTT 1038
Query 1118 TCAAGGGTAAAGATGATTTTGTCCAAGAACCGATACCCGAGGCTGCAATTCAAGAGCTAT 1177
||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1039 TCAAGGGTAAAGACGACTTTGTCCAAGAACCGATACCCGAGGCTGCAATTCAAGCGCTAT 1098
Query 1178 GGAGGCGATTAGAGGCGCCTGAGGCTCGGCTTGCAAAGGTCATATTGACTCCATTTGGTG 1237
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 1099 GGAGGCGATTAGAGGCGCCTGAGGCTCGGCTTGCAAAGGTTATATTAACTCCATATGGTG 1158
Query 1238 GGAAAATGAGTGAAATCGCAGAGCACGAAACACCGTTCCCACATCGAGAAGGGAATCTCT 1297
| ||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||
Sbjct 1159 GAAAAATGAGTGAAATCGCAGAGCACGAAACGTCATTCCCACATCGAAAAGGGAATCTCT 1218
Query 1298 ATGAGATTCAGTATTTGGCTTTTTGGAGAGAAGAGGAAGACAAGAACAAGATGGAAACAG 1357
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 ATGAGATTCAGTATCTGGCTTTTTGGAGAGAAGAGGAAGACAAGAACAAGATGGAAACAG 1278
Query 1358 AGAAGTATCTGAAATGGGTCGAGAGCGTTTACAATCTTATGACTCCTTATGTTTCGAAAT 1417
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 AGAAGTATCTGAAATGGGTTGAGAGCGTTTACAATCTTATGACTCCTTATGTTTCGAAAT 1338
Query 1418 CTCCAAGAGGAGCTTATGTCAATTTCATGGATCTTGATTTGGGAATGTATCTTGGAAAGG 1477
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1339 CTCCAAGAAGAGCTTATGTCAACTTCATGGATCTTGATTTGGGAATGTATCTTGGAAAGG 1398
Query 1478 AGGAGACAAAGTACGAGGAAGGAAAGAGTTGGGGAGTGAAGTATTTCAAGAACAATTTCG 1537
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1399 AAGAGACAAAGTACGAGGAAGGGAAGAGTTGGGGAGTGAAGTATTTCAAGAACAATTTCG 1458
Query 1538 AGAGATTGGTGAGGGTGAAAACGAGTGTTGATCCAACAGATTTCTTCTGCGATGAAC 1594
||||||||||||| |||||||| || ||||||||||||||||||||||| |||||||
Sbjct 1459 AGAGATTGGTGAGAGTGAAAACAAGCGTTGATCCAACAGATTTCTTCTGTGATGAAC 1515
Score = 592 bits (320), Expect = 5e-168
Identities = 401/439 (91%), Gaps = 10/439 (2%)
Strand=Plus/Plus
Query 34 aactctttgctctctcttttactcttttc-actgtgtgtttctcctctctctgctcttgt 92
||||||||||||||||| |||||| |||| ||||| |||||||||||||||| |||||||
Sbjct 1 AACTCTTTGCTCTCTCTCTTACTC-TTTCTACTGTATGTTTCTCCTCTCTCTACTCTTGT 59
Query 93 ttcag--c-t--c-ATAACCACGAAGACTTTCTTAAGTGTCTTTCTCACAGGATAAACGA 146
|| || | | | ||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 60 TTTAGCTCATACCAATAACCACGAAGACTTTCTTAAGTGTCTTTCTCACCGGATTAACGA 119
Query 147 CAACACCGTCGTATCCAAAGTCATACACACTTCCAAAGGCTC-TTCCTTTTGTTCCATCT 205
||||||| ||||||||||| |||||||||||||||||| ||| | |||||| ||||||||
Sbjct 120 CAACACCATCGTATCCAAAATCATACACACTTCCAAAGACTCATCCCTTTT-TTCCATCT 178
Query 206 TGGATTCTTCCATACAAAATCCAAGATTCTCTGTTCCTGAAACACCTAAACCGGTCTCAA 265
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 179 TGGATTCTTCCATACAAAACCCAAGATTCTCGGTTCCCGAAACACCTAAACCGGTCTCAA 238
Query 266 TCATCACTCCGGTTAAAGCCAGTGACGTTCAAACCGTCATCAGATGCGCACGGCTGCATG 325
|| |||||||||||| ||||||||||||||||||||| ||||||||||||| ||| || |
Sbjct 239 TCGTCACTCCGGTTAGAGCCAGTGACGTTCAAACCGTGATCAGATGCGCACTGCTTCACG 298
Query 326 GTATCCATGTAAGGACTCGCAGCGCCGGTCACGGCTGGGAAGGTCAATCTTACATCGCGT 385
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 299 GAATCCACGTAAGGACTCGCAGCGCCGGTCACGGCTGGGAAGGTCAATCTTACATTGCGT 358
Query 386 ACAACAAACCATTCGTCGTCATCGATCTTAGGAATCTTCGGTCTATATCATTAAACGTTG 445
|||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| |
Sbjct 359 ACAACAAACCATACGTCGTCATCGATCTGAGGAATCTTCGGTCTATATCATTAGACGTCG 418
Query 446 ATGACCGGACTGGTTGGGT 464
| ||||||||||||||||
Sbjct 419 AAAACCGGACTGGTTGGGT 437
> AT5G44410.1 | Symbols: | FAD-binding Berberine family protein
| chr5:17891222-17892978 REVERSE LENGTH=1757
Length=1757
Score = 1037 bits (561), Expect = 0.0
Identities = 1220/1528 (80%), Gaps = 86/1528 (6%)
Strand=Plus/Plus
Query 102 TAACCACGAAGACTTTCTTAAGTGTCTTTCTCACAGGATAAACGACAACACCGTCGTATC 161
|||||| ||| |||| || |||||||| |||||| | || |||| | | || | |
Sbjct 221 TAACCATGAAAACTTCCTCAAGTGTCTCTCTCACCGAATCAACG--AGGA-CGAC---T- 273
Query 162 CAA-AGTCATACACACTTCCAAAGGCT-CTTCCT-TTTGTTCCATCTTGGATTCTTCCAT 218
||| | |||||||||| | |||| | | |||| | ||| || |||||| ||||||||||
Sbjct 274 CAAGAATCATACACACAT-CAAAAGATCCTTCGTATTT-CTCAATCTTGAATTCTTCCAT 331
Query 219 ACAAAATCCAAGATTCTCTGTTCCT-GAAACACCTAAACCGGTCTCAATCATCACTCCGG 277
||||||||||||||||| |||| || ||||||||||||||||| ||||||||||||||||
Sbjct 332 ACAAAATCCAAGATTCTTTGTT-CTCGAAACACCTAAACCGGTTTCAATCATCACTCCGG 390
Query 278 TTAAAGCCAGTGACGTTCAAACCGT-C-ATCAGATGCGCACGGCTGCATGGTATCCATGT 335
|| |||||| || |||| || | | | || | |||||||||||| || ||||| || |
Sbjct 391 TTCAAGCCACCGATGTTC-AATC-TACGATTAAATGCGCACGGCTTCACGGTATACACAT 448
Query 336 AAGGACTCGCAGCGCCGGTCACGGCTGGGAAGGTCAATCTTACATCGCGTACAA-CAAAC 394
|||||| | || | ||||| | || |||||| ||||||||| || || || || ||
Sbjct 449 CAGGACTAGGAGTGGTGGTCATGACTACGAAGGTTTATCTTACATGGC-TAAAAGCAGAC 507
Query 395 CATTCGTCGTCATCGATCTT-AGGAATCTTCGGTCTA-TATCATTAAACGTTGATGACCG 452
| ||||| ||||| ||| || || ||||| ||||||| || ||||| | |||||| ||||
Sbjct 508 CGTTCGTTGTCATTGAT-TTGAGAAATCTCCGGTCTATTA-CATTAGATGTTGATAACCG 565
Query 453 GACTGGTTGGGTCCAAACCGGAGCAACGACTGGAGAGTTATACTTTGAGATTGGGAAAA- 511
||| |||||||| ||| ||||||| || | ||| || || |||| ||||||| ||||||
Sbjct 566 GACCGGTTGGGTTCAATCCGGAGCTACAATTGGGGAATTGTACTATGAGATT-GGAAAAT 624
Query 512 CCACCAAATCTCTT-G-CTTTCCCGGCCAGTATCCACCCAACCGTCGG-AGTCGGTGGAC 568
| ||||||| || | |||| |||||| || | | |||||||| || | |||| || |
Sbjct 625 TAAGCAAATCT-TTGGCCTTT-CCGGCCGGTCTTTATCCAACCGTTGGCA-TCGGAGGGC 681
Query 569 AGTTTAGCGGCGGAGGTTACGGCACGTTGCTTAGAAAATACGGTTTAGCGGCGGATAACA 628
| || | || || || ||||| |||||| | ||||||||||||||| ||||||| ||
Sbjct 682 AATTCGGAGGTGGTGGGTACGGTACGTTGATGAGAAAATACGGTTTATCGGCGGACAATG 741
Query 629 TAATCGATGCACTTGTGGTTGACGCGCGTGGGAGGATTCTTGACCGACAA-GCAATGGGT 687
|||| ||||||| | | ||||||||| ||| || |||||||||||||| || ||||||
Sbjct 742 TAATTGATGCACATATTGTTGACGCGAATGGAAGCTTTCTTGACCGACAAGGC-ATGGGT 800
Query 688 GAGGATTACTTTTGGGCGATTCGTGGAGGTGGCGGATCAAGCTT-TGGTGTTGTACTATC 746
|| |||| ||||||||| || |||||||| || ||||||||||| | |||||| || ||
Sbjct 801 GAAGATTTCTTTTGGGCTATCCGTGGAGGCGGAGGATCAAGCTTCT-CTGTTGTCCTGTC 859
Query 747 GTGGAAGATTAAG-TTAG-TCGATGTTCCGTCCACGGTCACCGTGTTTAAAGTCCAGAAA 804
||||||||| || || | | ||||||||||| || || || ||||||||| ||||
Sbjct 860 ATGGAAGATT-AGATT-GCTTGATGTTCCGTCGGTAGTAACGGTCTTTAAAGTCGTGAAA 917
Query 805 ACATCGGAGAAAGAGGCTGT-TAGGATCATCAACAAGTGGCAGTATGTTGCAGCTAAGGT 863
|||||||| ||||||||||| | |||||||||||||||||||||| |||| | ||||||
Sbjct 918 ACATCGGAAAAAGAGGCTGTCT-CGATCATCAACAAGTGGCAGTATATTGCGGATAAGGT 976
Query 864 TCCTAATGATCTTTTCATCAGCGCAACGTTGGAGAGATCAGACAAAAACTTA-GTGCACG 922
||||||||||||||||||||| || | | | | ||| || |||| | || | |
Sbjct 977 TCCTAATGATCTTTTCATCAGAGCTATGCT--ACAGA--AG---GAAACCGAGGTTTATG 1029
Query 923 CTTTGTTTACGGGACTTTATCTTGGTCCGGTGAA-CGATCTGTTGGCCTTGATGGAAGAA 981
||| ||| ||||||||||||| |||||||| || |||||| || || |||||| ||||
Sbjct 1030 CTTCGTTCCCGGGACTTTATCTCGGTCCGGT-AAGCGATCTATTAGCATTGATGAAAGAT 1088
Query 982 AAGTTTCCGGAGTTAAATCTTGAGA-TGGAAGATTGCACAGAGATGAGTTGGGTTGAGTC 1040
||||||||||| ||| |||||||| ||||| |||| | ||| ||||||||| |||||||
Sbjct 1089 AAGTTTCCGGAATTAGGTCTTGAGATTGGAA-ATTGTAGAGAAATGAGTTGGATTGAGTC 1147
Query 1041 TGTACTCTGGTTTGCTGATTTCCCAAAAGGAGAGTCGCTTGG-TGTTCTCGCGAATCGGA 1099
||| |||||| || | | | ||||||||| || ||| |||| ||||| ||||
Sbjct 1148 TGTTCTCTGG-TT--T-A--T---AAAAGGAGAATC-AATGGAAATTCTTGCGAAACGGA 1197
Query 1100 AGCGTACATCTCTG-TCTTTCAAGGGTAAAGATGATTTTGTCCAAGAACCGATACCCGAG 1158
| || || || | ||||||||||| ||||||||||| || ||||||||||||| |
Sbjct 1198 AACGAACGTC-AAGATCTTTCAAGGGAAAAGATGATTTCATCGAAGAACCGATACCTAAA 1256
Query 1159 GCTGCAATTCAAG-AGCTATGGAGGCGATTAGAGGCGCCTGAGGCTCGGCTTGCAAAGGT 1217
| || |||| || | || ||||| ||||| |||||||| |||||||||||||||||| |
Sbjct 1257 ACCGCGATTC-AGTATCTTTGGAGACGATTCGAGGCGCCCGAGGCTCGGCTTGCAAAGAT 1315
Query 1218 CATATTGACTCCATTTGGTGGGAAAATGAGTGAAATCGCAGAGCACGAAACACCGTTCCC 1277
|||| | |||||||||||||| |||||||||||||| || || |||||| ||| |||||
Sbjct 1316 CATACTCACTCCATTTGGTGGCAAAATGAGTGAAATTGCGGATAACGAAATACCATTCCC 1375
Query 1278 ACATCGAGAAGGGAATCTCTATGAGATTCAGTATTTGGCTTTTTGGAGAGAAGAGGAAGA 1337
|||| ||||||| ||||| ||||||||||| ||||| |||| |||||| ||||| |||||
Sbjct 1376 ACATAGAGAAGGTAATCTTTATGAGATTCAATATTTAGCTTATTGGAGTGAAGAAGAAGA 1435
Query 1338 CAAGAACAAGATGGAA-ACAGAGAAGTATCTGAAATGGGTCGAGAGCGTTTAC-AATCTT 1395
|||||||||| || || || |||||| ||| |||||||||||| || ||| ||| ||
Sbjct 1436 TAAGAACAAGA-CTAATACTGAAAAGTATTTGAGATGGGTCGAGAGTGTATACGAAT-TT 1493
Query 1396 ATGACTCCTTATGTTTCGAAATCTCCAAGAGGAGCTTATGTCAATTTCATG-GATC-TTG 1453
||||||||||||||||| ||||||||| || |||||||||| ||||| | | || | |||
Sbjct 1494 ATGACTCCTTATGTTTCAAAATCTCCACGAAGAGCTTATGTTAATTTTA-GAGA-CATTG 1551
Query 1454 ATTTGGGAATGTATCTT--G--GAA-AGGAGGAGACAAAGTACGAGGAAGGAAAGAG-TT 1507
||||||||||||||||| | ||| | || |||||||||||||||||| |||| | ||
Sbjct 1552 ATTTGGGAATGTATCTTGGGTTGAATATGA--AGACAAAGTACGAGGAAGCAAAG-GTTT 1608
Query 1508 GGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGGGTGAAAACGAGTGTTG 1567
||||||||||||||||||||||||||||||| ||||||||||| || ||||| | |||||
Sbjct 1609 GGGGAGTGAAGTATTTCAAGAACAATTTCGATAGATTGGTGAGAGTTAAAACAAATGTTG 1668
Query 1568 ATCCAACAGATTTCTTCTGCGATGAACA 1595
|||||| ||||||||||| ||||||||
Sbjct 1669 ATCCAATGGATTTCTTCTGTGATGAACA 1696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81676286715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5