BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948683
Length=1340
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44370.1 | Symbols: PHT4;6 | phosphate transporter 4;6 | chr... 2272 0.0
> AT5G44370.1 | Symbols: PHT4;6 | phosphate transporter 4;6 | chr5:17874885-17877564
REVERSE LENGTH=1999
Length=1999
Score = 2272 bits (1230), Expect = 0.0
Identities = 1306/1343 (97%), Gaps = 4/1343 (0%)
Strand=Plus/Plus
Query 1 GATCAGAGAAAAGGTCTAACATGAAGTTATCAAATATTCCGCAACGCTATGTGATAGTCT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 419 GATCAGAGAAAAGGTCTAACATGAAGTTATCAAATATTCCGCAACGCTATGTAATAGTCT 478
Query 61 TCTTAACTTTCCTCAGCACTTGTGTGTGTTACATAGAGCGTGTTGGCTTCTCTATTGCAT 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCTTAACTTTCCTCAGCACATGTGTGTGTTACATAGAGCGTGTTGGCTTCTCTATTGCAT 538
Query 121 ATACTGTTGCTGCAGATGCTGCTGGGATCAATCAATCGAGTAAAGGAACTATACTTTCTA 180
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 539 ATACCGTTGCTGCTGATGCTGCTGGGATCAATCAATCGAGTAAAGGAACCATACTTTCTA 598
Query 181 CATTCTTTGTTGGCTATGCTTGTTCTCAAGTCCCTGGAGGTTGGGCAGCTCAGAAAATTG 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CATTCTTTGTTGGCTATGCATGTTCTCAAGTCCCTGGAGGTTGGGCAGCTCAGAAAATTG 658
Query 241 GGGGAAGGAAAGTTCTTCTTCTGTCATTTGTTTTATGGTCATCGACGTGTTTCTTGGTTC 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 659 GGGGAAGGAAAGTTCTTCTTCTGTCGTTTGTTTTATGGTCATCGACGTGTTTCTTGGTTC 718
Query 301 CGCTTGATCCAAACAGAGTCGGGCTTTTGGTTTTTGCCCGTTTACTTGTTGGTGTTGCTC 360
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 719 CACTTGATCCAAACAGAGTCGGGCTTTTGGTTGTTGCCCGTTTACTTGTTGGTGTTGCTC 778
Query 361 AAGGTTTCATCTTTCCCTCTATCCACACAGTTTTGGCTCAGTGGGTTCCTCCTCATGAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AAGGTTTCATCTTTCCCTCTATCCACACAGTTTTGGCTCAGTGGGTTCCTCCTCATGAAA 838
Query 421 GGTCTAGATTGGTTTCAATAACGACTTCGGGAATGTATTTAGGTGCAGCTTTAGGAATGT 480
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 839 GGTCTAGATTGGTTTCGATAACGACATCAGGAATGTATTTAGGTGCAGCTTTAGGAATGT 898
Query 481 GGCTTCTCCCTGCTTTAGTTGAGCTTAGAGGTCCGGAATCAGTTTTCTTAGCAGAGGCAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GGCTTCTCCCTGCTTTAGTTGAGCTTAGAGGTCCGGAATCAGTTTTCTTAGCAGAGGCAT 958
Query 541 TAGCAGGTGTTATATGGTCATTGCTTTGGATTAGGTATGCTACTGACCCACCTCGATCTG 600
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 959 TAGCAGGTGTTATATGGTCATTGCTTTGGATTAGGTACGCTACTGACCCACCTCGATCTG 1018
Query 601 AGCATCCGAAAGCCGCCGCTGCTGGATTCGGAGGTGCTCTTTTACCGACTAATGTAAACC 660
||||||| ||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1019 AGCATCCAAAAGCTGCTGCTGCTGGATTCGGAGGTGCTCTGTTACCGACTAATGTAAACC 1078
Query 661 ACCATAAAGTTACTCATATCCCGTGGAAGAAAATCATGCTCAGTTTACCCGTTTGGGCGA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ACCATAAAGTTACTCATATCCCGTGGAAGAAAATCATGCTCAGTTTACCCGTTTGGGCGA 1138
Query 721 TCGTGGTTAACAATTTCACATTCCATTATGCTTTATACGTGTTGATGAACTGGCTTCCAA 780
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1139 TTGTGGTTAACAATTTCACATTCCATTACGCTTTATATGTGTTGATGAACTGGCTTCCAA 1198
Query 781 CGTATTTCGAGCTTGGACTCCAGATCAGTCTTCAGGGGATGGATTCATCAAAGATGGTGC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CGTATTTCGAGCTTGGACTCCAGATCAGTCTTCAGGGGATGGATTCATCAAAGATGGTGC 1258
Query 841 CATACCTCAACATGTTTGTATTCTCCATTGTTGGTGGGTTCATCGCAGACTATTTGATCA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CATACCTCAACATGTTTGTATTCTCCATTGTTGGTGGGTTCATCGCAGACTATTTGATCA 1318
Query 901 CCAAGAGAATACTCTCGGTAACCAGAACCCGAAAGTTCTTGAACACGGTTGGGTTCCTAA 960
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1319 CCAAGAGAATACTCTCGGTAACCAGAACCCGCAAGTTCTTGAACACAGTTGGGTTCCTAA 1378
Query 961 TTGCTTCAGCGGCATTGATGGTCTTGCCTC-TGTTTAGAACTGAAAATGGTGTGATCTTA 1019
||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||
Sbjct 1379 TTGCTTCAGCGGCATTGATGGTCTTACC-CATGTTTAGAACAGAAAATGGTGTGATCTTA 1437
Query 1020 TGTTCCTCTGTAGCTCTTGGGTTTCTAGCATTAGGAAGAGCCGGTTTTGCGGTGAACCAT 1079
|||||||| || |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1438 TGTTCCTCAGTGGCTCTTGGGTTTTTGGCATTAGGAAGAGCCGGTTTTGCGGTGAACCAT 1497
Query 1080 ATGGATATTGCTCCAAGATATGCAGGAATAGTGATGGGAGTTTCAAATACTGCTGGGACA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 ATGGATATTGCTCCAAGATATGCAGGAATAGTGATGGGAGTTTCAAATACTGCTGGGACA 1557
Query 1140 TTAGCTGGAATCATTGGTGTTGATTTGACTGGAAAGCTTCTTGAAGCTTCTAAATTGGTT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TTAGCTGGAATCATTGGTGTTGATTTGACTGGAAAGCTTCTTGAAGCTTCTAAATTGGTT 1617
Query 1200 TATTCAGATTTGTCACATCCTGAGAGCTGGAGAGTTGTGTTCTTCATCCCGGGTTTGCTC 1259
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TACTCAGATTTGTCACATCCAGAGAGCTGGAGAGTTGTGTTCTTCATCCCGGGTTTGCTC 1677
Query 1260 TGTATCTTTAGCTCTGTTGTGTTTTTGCTGTTTTCTACAGGAGAAAGGATCTTTGATTGA 1319
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1678 TGTATCTTTAGCTCTGTTGTGTTTCTGCTGTTTTCTACTGGAGAAAGGATCTTTGATTGA 1737
Query 1320 GAAAAGAAAAA--GATCAAAACT 1340
| ||||||||| ||||||||||
Sbjct 1738 GGAAAGAAAAAAAGATCAAAACT 1760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65963516130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5